Wall clock time and date at job start Wed Apr 1 2020 00:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47145 * 2 1 4 4 O 1.42901 * 109.47384 * 179.97438 * 3 2 1 5 5 C 1.42894 * 114.00281 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47369 * 179.97438 * 5 4 3 7 7 O 1.21290 * 119.99822 * 0.02562 * 6 5 4 8 8 N 1.34768 * 120.00453 * 179.97438 * 6 5 4 9 9 C 1.46503 * 120.00555 * 180.27803 * 8 6 5 10 10 C 1.52999 * 109.47353 * 174.91086 * 9 8 6 11 11 H 1.08998 * 109.45922 * 174.43947 * 10 9 8 12 12 C 1.53036 * 109.46287 * 294.41570 * 10 9 8 13 13 C 1.53118 * 109.27724 * 179.19356 * 12 10 9 14 14 C 1.53116 * 109.16332 * 302.34866 * 13 12 10 15 15 C 1.53042 * 109.28002 * 57.65072 * 14 13 12 16 16 N 1.46841 * 109.52427 * 300.82366 * 15 14 13 17 17 C 1.46900 * 111.00420 * 185.83643 * 16 15 14 18 18 C 1.50702 * 109.46793 * 300.51263 * 17 16 15 19 19 O 1.21293 * 120.00421 * 354.68728 * 18 17 16 20 20 N 1.34781 * 119.99617 * 174.68356 * 18 17 16 21 21 C 1.37103 * 119.99465 * 179.97438 * 20 18 17 22 22 H 1.08004 * 120.00279 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99679 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00203 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00168 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.46853 * 90.00250 * 25 23 21 27 27 H 1.48496 * 109.47468 * 210.00305 * 25 23 21 28 28 H 1.48502 * 109.47372 * 330.00909 * 25 23 21 29 29 H 1.09005 * 109.47416 * 300.00000 * 1 2 3 30 30 H 1.08996 * 109.47171 * 59.99945 * 1 2 3 31 31 H 1.09004 * 109.47478 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47119 * 240.00170 * 2 1 3 33 33 H 1.09001 * 109.47396 * 119.99643 * 2 1 3 34 34 H 1.08998 * 109.46973 * 60.00081 * 3 2 1 35 35 H 1.08996 * 109.47131 * 300.00080 * 3 2 1 36 36 H 1.09003 * 109.47076 * 60.00551 * 5 4 3 37 37 H 1.08996 * 109.47736 * 300.00605 * 5 4 3 38 38 H 0.97008 * 119.99859 * 0.02562 * 8 6 5 39 39 H 1.09001 * 109.47031 * 294.91715 * 9 8 6 40 40 H 1.09001 * 109.46580 * 54.91124 * 9 8 6 41 41 H 1.08993 * 109.50439 * 299.13978 * 12 10 9 42 42 H 1.09005 * 109.50000 * 59.22001 * 12 10 9 43 43 H 1.09003 * 109.52224 * 62.24972 * 13 12 10 44 44 H 1.08994 * 109.52319 * 182.37820 * 13 12 10 45 45 H 1.08999 * 109.50843 * 177.59683 * 14 13 12 46 46 H 1.09006 * 109.50592 * 297.67555 * 14 13 12 47 47 H 1.09003 * 109.45447 * 60.83658 * 15 14 13 48 48 H 1.08997 * 109.46408 * 180.80641 * 15 14 13 49 49 H 1.09004 * 109.46774 * 60.50988 * 17 16 15 50 50 H 1.08991 * 109.47733 * 180.50965 * 17 16 15 51 51 H 0.96995 * 120.00269 * 0.02562 * 20 18 17 52 52 H 0.97001 * 120.00668 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0502 2.7480 0.0001 6 6 5.5525 2.6290 0.0014 7 8 6.0741 1.5340 0.0022 8 7 6.3164 3.7393 0.0007 9 6 7.7769 3.6237 -0.0042 10 6 8.3983 5.0159 -0.1320 11 1 9.4815 4.9403 -0.0365 12 6 8.0470 5.6076 -1.4990 13 6 8.6540 7.0086 -1.6145 14 6 8.1285 7.8799 -0.4703 15 6 8.4773 7.2223 0.8669 16 7 7.8733 5.8853 0.9287 17 6 8.0706 5.2790 2.2521 18 6 9.5460 5.1677 2.5386 19 8 10.3539 5.4650 1.6842 20 7 9.9677 4.7377 3.7444 21 6 11.3099 4.6359 4.0048 22 1 12.0293 4.9006 3.2440 23 6 11.7447 4.1931 5.2480 24 7 10.8694 3.8715 6.1740 25 14 13.5734 4.0537 5.6028 26 1 14.0680 5.3369 6.1634 27 1 13.8057 2.9629 6.5832 28 1 14.3002 3.7509 4.3437 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9563 -0.8899 36 1 3.7283 3.2894 0.8897 37 1 3.7289 3.2885 -0.8903 38 1 5.8993 4.6151 -0.0004 39 1 8.1079 3.1620 0.9261 40 1 8.0897 3.0074 -0.8471 41 1 8.4503 4.9702 -2.2858 42 1 6.9636 5.6702 -1.6008 43 1 9.7401 6.9413 -1.5518 44 1 8.3709 7.4505 -2.5697 45 1 8.5899 8.8660 -0.5222 46 1 7.0464 7.9795 -0.5560 47 1 9.5602 7.1362 0.9575 48 1 8.0920 7.8330 1.6834 49 1 7.5991 5.9029 3.0115 50 1 7.6216 4.2860 2.2675 51 1 9.3216 4.4996 4.4276 52 1 11.1729 3.5620 7.0418 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480309233.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:17 Heat of formation + Delta-G solvation = -149.142429 kcal Electronic energy + Delta-G solvation = -30886.272576 eV Core-core repulsion = 26691.417105 eV Total energy + Delta-G solvation = -4194.855471 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.51277 -40.54200 -39.09520 -38.57022 -36.05039 -35.76118 -34.55229 -34.25216 -33.29716 -32.32342 -29.59023 -28.89392 -27.24439 -26.46586 -25.98852 -23.98251 -22.57531 -22.42841 -21.72656 -21.15045 -20.47765 -19.74322 -18.28996 -17.88339 -17.67700 -17.48881 -16.94720 -16.70133 -16.54545 -16.35362 -15.95550 -15.67050 -15.63330 -15.28855 -15.03680 -14.88877 -14.85640 -14.27488 -14.26297 -14.01035 -13.51888 -13.44467 -13.17898 -13.02945 -13.01590 -12.91609 -12.86050 -12.81022 -12.58165 -12.47008 -12.17617 -11.99923 -11.80014 -11.76171 -11.55615 -11.38634 -11.27264 -11.15265 -10.96158 -10.84133 -10.62978 -10.05587 -10.01887 -9.05051 -8.49346 -5.99297 1.32616 1.37088 1.49484 1.62557 1.86736 1.99562 2.25543 2.88547 3.09777 3.16689 3.23836 3.72112 3.83936 3.87030 4.03998 4.06639 4.15419 4.22865 4.28797 4.32341 4.35322 4.37723 4.45327 4.48090 4.55342 4.59544 4.60498 4.68299 4.69297 4.78548 4.86583 4.87528 4.95568 5.05921 5.16231 5.18596 5.19556 5.25715 5.31430 5.31849 5.36649 5.37631 5.43481 5.59759 5.88593 6.04192 6.10580 6.16264 6.54628 6.66635 7.08182 7.31028 7.51788 8.05925 8.66133 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009530 B = 0.002711 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.423332 B =10324.771112 C =12530.121877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.056 3.944 4 O -0.404 6.404 5 C 0.050 3.950 6 C 0.503 3.497 7 O -0.585 6.585 8 N -0.694 5.694 9 C 0.137 3.863 10 C 0.061 3.939 11 H 0.055 0.945 12 C -0.099 4.099 13 C -0.118 4.118 14 C -0.103 4.103 15 C 0.036 3.964 16 N -0.484 5.484 17 C 0.046 3.954 18 C 0.408 3.592 19 O -0.618 6.618 20 N -0.571 5.571 21 C -0.332 4.332 22 H 0.079 0.921 23 C -0.014 4.014 24 N -0.919 5.919 25 Si 0.991 3.009 26 H -0.269 1.269 27 H -0.272 1.272 28 H -0.274 1.274 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.422 0.578 39 H 0.035 0.965 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.037 0.963 44 H 0.085 0.915 45 H 0.070 0.930 46 H 0.087 0.913 47 H 0.032 0.968 48 H 0.071 0.929 49 H 0.111 0.889 50 H 0.098 0.902 51 H 0.394 0.606 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.892 4.181 -13.508 25.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C -0.020 4.020 4 O -0.323 6.323 5 C -0.029 4.029 6 C 0.290 3.710 7 O -0.465 6.465 8 N -0.349 5.349 9 C 0.012 3.988 10 C -0.048 4.048 11 H 0.073 0.927 12 C -0.137 4.137 13 C -0.156 4.156 14 C -0.141 4.141 15 C -0.092 4.092 16 N -0.207 5.207 17 C -0.086 4.086 18 C 0.195 3.805 19 O -0.506 6.506 20 N -0.208 5.208 21 C -0.461 4.461 22 H 0.097 0.903 23 C -0.214 4.214 24 N -0.560 5.560 25 Si 0.814 3.186 26 H -0.194 1.194 27 H -0.197 1.197 28 H -0.199 1.199 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.125 0.875 37 H 0.132 0.868 38 H 0.261 0.739 39 H 0.054 0.946 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.056 0.944 44 H 0.104 0.896 45 H 0.089 0.911 46 H 0.105 0.895 47 H 0.051 0.949 48 H 0.090 0.910 49 H 0.129 0.871 50 H 0.116 0.884 51 H 0.228 0.772 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.376 3.432 -13.955 24.934 hybrid contribution 1.814 -0.105 1.254 2.208 sum -18.562 3.327 -12.701 22.736 Atomic orbital electron populations 1.21662 0.92810 1.02815 1.02793 1.21495 0.97165 0.95462 1.02431 1.22821 0.78836 0.98531 1.01817 1.87974 1.21587 1.26978 1.95804 1.22292 0.88574 0.86572 1.05440 1.21045 0.90399 0.83944 0.75587 1.90722 1.75968 1.28882 1.50898 1.45609 1.05760 1.09326 1.74173 1.21189 0.80468 0.96614 1.00521 1.22056 0.98583 0.90779 0.93335 0.92706 1.21558 1.02281 0.96296 0.93560 1.21553 0.99249 0.95407 0.99397 1.21514 1.02353 0.97930 0.92284 1.22323 0.98382 0.89122 0.99327 1.62541 1.55093 1.02595 1.00463 1.22166 0.90226 1.02487 0.93745 1.22117 0.93187 0.82515 0.82649 1.90413 1.57666 1.55973 1.46527 1.42153 1.07545 1.57709 1.13346 1.19636 0.84004 1.43416 0.99087 0.90342 1.26047 1.04325 0.96127 0.94885 1.69671 1.35953 1.44664 1.05728 0.84962 0.77157 0.78399 0.78039 1.19426 1.19660 1.19928 0.91798 0.91517 0.91691 0.92115 0.92476 0.91691 0.91228 0.87491 0.86838 0.73889 0.94640 0.91665 0.91434 0.89320 0.94439 0.89606 0.91137 0.89468 0.94946 0.91024 0.87143 0.88362 0.77246 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.91 71.98 0.71 -0.70 16 2 C -0.13 -1.97 6.30 30.59 0.19 -1.77 16 3 C 0.06 0.84 5.94 71.98 0.43 1.27 16 4 O -0.40 -9.63 9.88 -129.94 -1.28 -10.92 16 5 C 0.05 0.89 6.42 71.24 0.46 1.35 16 6 C 0.50 13.56 7.91 87.66 0.69 14.25 16 7 O -0.59 -22.85 16.50 15.98 0.26 -22.58 16 8 N -0.69 -15.89 5.01 -463.05 -2.32 -18.21 16 9 C 0.14 4.10 4.56 86.38 0.39 4.49 16 10 C 0.06 1.79 1.72 44.94 0.08 1.87 16 11 H 0.06 2.16 5.71 -2.39 -0.01 2.15 16 12 C -0.10 -2.14 5.26 30.65 0.16 -1.98 16 13 C -0.12 -2.51 6.00 30.67 0.18 -2.33 16 14 C -0.10 -2.15 6.09 30.65 0.19 -1.96 16 15 C 0.04 1.04 5.00 86.33 0.43 1.47 16 16 N -0.48 -13.46 4.04 -875.65 -3.54 -17.00 16 17 C 0.05 1.51 5.45 85.56 0.47 1.97 16 18 C 0.41 18.66 7.18 87.66 0.63 19.29 16 19 O -0.62 -31.71 11.22 -3.07 -0.03 -31.75 16 20 N -0.57 -29.27 5.29 -306.97 -1.62 -30.89 16 21 C -0.33 -18.87 9.68 84.04 0.81 -18.05 16 22 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 23 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 24 N -0.92 -50.45 13.05 21.66 0.28 -50.16 16 25 Si 0.99 43.64 29.55 68.60 2.03 45.66 16 26 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 27 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 28 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 29 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 35 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.42 7.08 7.43 -92.70 -0.69 6.39 16 39 H 0.04 1.30 6.56 -2.39 -0.02 1.29 16 40 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.09 1.49 7.31 -2.38 -0.02 1.47 16 43 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 47 H 0.03 1.25 5.66 -2.39 -0.01 1.24 16 48 H 0.07 1.95 8.12 -2.39 -0.02 1.93 16 49 H 0.11 3.21 8.14 -2.38 -0.02 3.19 16 50 H 0.10 3.20 6.01 -2.39 -0.01 3.18 16 51 H 0.39 19.55 7.90 -92.71 -0.73 18.82 16 52 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -75.44 409.20 -0.43 -75.87 By element: Atomic # 1 Polarization: 41.60 SS G_CDS: -0.50 Total: 41.11 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: 6.29 Total: 18.89 kcal Atomic # 7 Polarization: -109.07 SS G_CDS: -7.20 Total: -116.27 kcal Atomic # 8 Polarization: -64.20 SS G_CDS: -1.05 Total: -65.25 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -75.44 -0.43 -75.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480309233.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.276 kcal (2) G-P(sol) polarization free energy of solvation -75.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds