Wall clock time and date at job start Wed Apr 1 2020 00:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47000 * 2 1 4 4 O 1.42897 * 109.46960 * 179.97438 * 3 2 1 5 5 C 1.42899 * 114.00297 * 179.97438 * 4 3 2 6 6 C 1.50694 * 109.47605 * 179.97438 * 5 4 3 7 7 O 1.21285 * 120.00263 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00151 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99966 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.46912 * 184.97960 * 9 8 6 11 11 H 1.08998 * 109.45987 * 186.08978 * 10 9 8 12 12 C 1.53034 * 109.46496 * 66.12448 * 10 9 8 13 13 C 1.53123 * 109.27909 * 180.80553 * 12 10 9 14 14 C 1.53109 * 109.16093 * 57.65338 * 13 12 10 15 15 C 1.53040 * 109.27991 * 302.34323 * 14 13 12 16 16 N 1.46844 * 109.46249 * 306.06588 * 10 9 8 17 17 C 1.46897 * 111.00375 * 305.86132 * 16 10 9 18 18 C 1.50695 * 109.47222 * 164.00593 * 17 16 10 19 19 O 1.21297 * 120.00247 * 359.97438 * 18 17 16 20 20 N 1.34784 * 120.00083 * 179.97438 * 18 17 16 21 21 C 1.37091 * 120.00078 * 179.97438 * 20 18 17 22 22 H 1.08002 * 120.00205 * 0.02562 * 21 20 18 23 23 C 1.38946 * 120.00109 * 180.27705 * 21 20 18 24 24 N 1.31416 * 120.00523 * 179.73066 * 23 21 20 25 25 Si 1.86801 * 119.99938 * 359.72488 * 23 21 20 26 26 H 1.48506 * 109.47055 * 90.00043 * 25 23 21 27 27 H 1.48497 * 109.47358 * 210.00054 * 25 23 21 28 28 H 1.48503 * 109.47185 * 330.00506 * 25 23 21 29 29 H 1.08998 * 109.47143 * 60.00611 * 1 2 3 30 30 H 1.09005 * 109.47190 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47387 * 300.00055 * 1 2 3 32 32 H 1.08997 * 109.47004 * 239.99570 * 2 1 3 33 33 H 1.09003 * 109.46956 * 120.00097 * 2 1 3 34 34 H 1.08997 * 109.47593 * 59.99930 * 3 2 1 35 35 H 1.09000 * 109.47103 * 299.99386 * 3 2 1 36 36 H 1.09000 * 109.46618 * 59.99885 * 5 4 3 37 37 H 1.09005 * 109.47463 * 300.00492 * 5 4 3 38 38 H 0.96995 * 120.00148 * 359.97438 * 8 6 5 39 39 H 1.08995 * 109.47293 * 64.97585 * 9 8 6 40 40 H 1.08998 * 109.46977 * 304.97426 * 9 8 6 41 41 H 1.09004 * 109.50489 * 300.74567 * 12 10 9 42 42 H 1.09003 * 109.50520 * 60.81902 * 12 10 9 43 43 H 1.08997 * 109.51666 * 177.56052 * 13 12 10 44 44 H 1.09006 * 109.51845 * 297.68059 * 13 12 10 45 45 H 1.09002 * 109.50540 * 62.28678 * 14 13 12 46 46 H 1.09002 * 109.50422 * 182.37110 * 14 13 12 47 47 H 1.08994 * 109.46618 * 299.16861 * 15 14 13 48 48 H 1.08997 * 109.46394 * 179.19755 * 15 14 13 49 49 H 1.09003 * 109.47446 * 44.00308 * 17 16 10 50 50 H 1.09005 * 109.46816 * 284.00195 * 17 16 10 51 51 H 0.97000 * 119.99563 * 0.02562 * 20 18 17 52 52 H 0.96991 * 120.00220 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4689 1.4425 0.0006 5 6 4.0502 2.7479 0.0001 6 6 5.5525 2.6289 0.0014 7 8 6.0742 1.5340 0.0022 8 7 6.3164 3.7393 0.0017 9 6 7.7769 3.6236 0.0024 10 6 8.3987 5.0159 0.1278 11 1 9.4807 4.9414 0.0199 12 6 8.0626 5.6027 1.5007 13 6 8.6698 7.0039 1.6140 14 6 8.1305 7.8785 0.4789 15 6 8.4647 7.2258 -0.8644 16 7 7.8610 5.8884 -0.9238 17 6 8.0436 5.2868 -2.2515 18 6 7.1571 5.9890 -3.2474 19 8 6.4429 6.9006 -2.8866 20 7 7.1577 5.6040 -4.5391 21 6 6.3508 6.2424 -5.4450 22 1 5.7148 7.0541 -5.1238 23 6 6.3471 5.8418 -6.7755 24 7 5.5697 6.4502 -7.6429 25 14 7.4475 4.4383 -7.3313 26 1 6.7147 3.1533 -7.2008 27 1 7.8353 4.6452 -8.7497 28 1 8.6672 4.4006 -6.4850 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 3.7282 3.2893 0.8896 37 1 3.7290 3.2884 -0.8903 38 1 5.8993 4.6150 0.0007 39 1 8.1052 3.1615 -0.9285 40 1 8.0921 3.0078 0.8447 41 1 6.9804 5.6648 1.6149 42 1 8.4747 4.9626 2.2808 43 1 8.3963 7.4427 2.5735 44 1 9.7553 6.9375 1.5399 45 1 7.0494 7.9764 0.5770 46 1 8.5914 8.8650 0.5292 47 1 9.5464 7.1408 -0.9678 48 1 8.0696 7.8389 -1.6744 49 1 7.7791 4.2301 -2.2111 50 1 9.0851 5.3893 -2.5566 51 1 7.7286 4.8747 -4.8275 52 1 5.5675 6.1708 -8.5717 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480309236.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:21 Heat of formation + Delta-G solvation = -118.466395 kcal Electronic energy + Delta-G solvation = -31011.690879 eV Core-core repulsion = 26818.165621 eV Total energy + Delta-G solvation = -4193.525258 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.19850 -39.21886 -37.96647 -37.61916 -34.73912 -34.08440 -33.83802 -33.21260 -31.65715 -31.35045 -28.69979 -27.73476 -26.36076 -25.29939 -24.49252 -22.92699 -21.78449 -21.42330 -20.69536 -19.47066 -19.31459 -18.29212 -17.27556 -16.92888 -16.64719 -16.27902 -15.70540 -15.43747 -15.38510 -14.96496 -14.84809 -14.57502 -14.28071 -14.12686 -13.91509 -13.64365 -13.41689 -13.28453 -13.22255 -12.92287 -12.53507 -12.40393 -12.28607 -12.16897 -12.08501 -12.00664 -11.83908 -11.61577 -11.22624 -11.15588 -11.10967 -11.07563 -10.75982 -10.60121 -10.36941 -10.28270 -9.98554 -9.80560 -9.73326 -9.54587 -8.98154 -8.62250 -8.18727 -8.03958 -6.32258 -3.83506 2.67632 2.81278 3.02689 3.07830 3.15709 3.70341 3.75256 3.96550 4.10046 4.49934 4.64317 4.74498 4.76071 4.79955 4.87436 4.90219 5.04219 5.11689 5.12913 5.16476 5.17829 5.22073 5.26253 5.29698 5.31070 5.41831 5.51130 5.54452 5.58989 5.61571 5.70892 5.75922 5.77767 5.88146 5.91574 5.91864 5.94332 5.97760 5.99912 6.09301 6.32562 6.39784 6.47074 6.94162 7.10975 7.23512 7.57419 7.61258 8.13022 8.29948 8.59225 8.94208 9.41814 9.82532 10.80776 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.006143 B = 0.003932 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4557.043767 B = 7118.737916 C =10519.183521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.059 3.941 4 O -0.365 6.365 5 C 0.044 3.956 6 C 0.514 3.486 7 O -0.530 6.530 8 N -0.713 5.713 9 C 0.126 3.874 10 C 0.070 3.930 11 H 0.055 0.945 12 C -0.108 4.108 13 C -0.121 4.121 14 C -0.114 4.114 15 C 0.058 3.942 16 N -0.509 5.509 17 C 0.034 3.966 18 C 0.455 3.545 19 O -0.559 6.559 20 N -0.592 5.592 21 C -0.304 4.304 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.882 5.882 25 Si 0.877 3.123 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.414 0.586 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.073 0.927 46 H 0.063 0.937 47 H 0.024 0.976 48 H 0.096 0.904 49 H 0.093 0.907 50 H 0.050 0.950 51 H 0.369 0.631 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.923 -6.097 19.029 20.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.018 4.018 4 O -0.284 6.284 5 C -0.036 4.036 6 C 0.299 3.701 7 O -0.406 6.406 8 N -0.368 5.368 9 C 0.002 3.998 10 C -0.039 4.039 11 H 0.073 0.927 12 C -0.146 4.146 13 C -0.158 4.158 14 C -0.152 4.152 15 C -0.069 4.069 16 N -0.234 5.234 17 C -0.097 4.097 18 C 0.240 3.760 19 O -0.441 6.441 20 N -0.231 5.231 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.522 5.522 25 Si 0.704 3.296 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.250 0.750 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.092 0.908 46 H 0.082 0.918 47 H 0.042 0.958 48 H 0.114 0.886 49 H 0.111 0.889 50 H 0.068 0.932 51 H 0.202 0.798 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.341 -6.361 19.129 20.161 hybrid contribution 1.404 -0.488 -0.957 1.767 sum 1.744 -6.848 18.172 19.498 Atomic orbital electron populations 1.21699 0.94721 1.02205 1.02071 1.21441 0.95569 0.95507 1.03548 1.22635 0.80579 0.98168 1.00407 1.87974 1.19507 1.25404 1.95487 1.22183 0.91698 0.86795 1.02931 1.20206 0.88685 0.84553 0.76616 1.90708 1.74696 1.26640 1.48581 1.45742 1.06531 1.09350 1.75189 1.21442 0.80112 0.95995 1.02250 1.21961 0.97163 0.91757 0.93038 0.92724 1.21600 1.01960 0.96244 0.94825 1.21594 0.99887 0.95511 0.98826 1.21557 1.02191 0.97811 0.93640 1.22165 0.95552 0.89936 0.99263 1.61458 1.58212 1.02221 1.01532 1.22032 0.98405 0.99804 0.89500 1.19597 0.86881 0.86956 0.82537 1.90539 1.43837 1.31378 1.78323 1.42228 1.39931 1.33127 1.07861 1.19396 1.19427 1.16395 0.88003 0.86280 1.25020 0.97397 0.97928 0.95715 1.69615 1.37956 1.40948 1.03644 0.86710 0.80753 0.82903 0.79266 1.19558 1.20179 1.19559 0.92378 0.92051 0.92580 0.90938 0.91142 0.93262 0.92898 0.90416 0.89736 0.74960 0.91436 0.90734 0.90934 0.91554 0.91962 0.92466 0.90791 0.91824 0.95773 0.88562 0.88881 0.93247 0.79809 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.72 16 2 C -0.12 -1.15 6.30 -26.73 -0.17 -1.32 16 3 C 0.06 0.61 5.94 37.16 0.22 0.83 16 4 O -0.37 -5.11 9.88 -55.14 -0.54 -5.65 16 5 C 0.04 0.53 6.42 36.00 0.23 0.76 16 6 C 0.51 7.44 7.91 -10.99 -0.09 7.35 16 7 O -0.53 -9.73 16.50 -14.35 -0.24 -9.97 16 8 N -0.71 -8.85 5.08 -60.30 -0.31 -9.16 16 9 C 0.13 1.47 4.58 -4.04 -0.02 1.45 16 10 C 0.07 0.76 2.11 -67.73 -0.14 0.61 16 11 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 12 C -0.11 -1.01 5.27 -26.65 -0.14 -1.15 16 13 C -0.12 -1.10 6.00 -26.61 -0.16 -1.26 16 14 C -0.11 -1.28 6.09 -26.65 -0.16 -1.45 16 15 C 0.06 0.81 5.11 -3.83 -0.02 0.79 16 16 N -0.51 -7.05 3.44 -228.13 -0.79 -7.83 16 17 C 0.03 0.54 5.26 -4.98 -0.03 0.51 16 18 C 0.45 9.82 7.47 -10.98 -0.08 9.74 16 19 O -0.56 -13.93 14.41 5.54 0.08 -13.85 16 20 N -0.59 -13.83 5.09 -10.96 -0.06 -13.89 16 21 C -0.30 -8.43 10.16 -14.94 -0.15 -8.58 16 22 H 0.12 3.76 7.39 -52.49 -0.39 3.38 16 23 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 24 N -0.88 -25.57 13.96 55.50 0.77 -24.80 16 25 Si 0.88 19.51 27.73 -169.99 -4.71 14.80 16 26 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 27 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 28 H -0.27 -5.50 6.53 56.52 0.37 -5.13 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.41 4.97 7.45 -40.82 -0.30 4.66 16 39 H 0.07 0.86 6.36 -51.93 -0.33 0.53 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.70 7.36 -51.93 -0.38 0.32 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.10 1.67 6.34 -51.93 -0.33 1.35 16 49 H 0.09 1.40 5.52 -51.93 -0.29 1.11 16 50 H 0.05 0.72 8.06 -51.93 -0.42 0.30 16 51 H 0.37 7.76 5.77 -40.82 -0.24 7.53 16 52 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 411.79 15.07 6.21 6.21 Total: -1.00 -33.89 411.79 -9.04 -42.93 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: -9.03 Total: 12.57 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: -0.43 Total: 8.63 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: -0.37 Total: -55.68 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.70 Total: -29.46 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -4.71 Total: 14.80 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.89 -9.04 -42.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480309236.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.532 kcal (2) G-P(sol) polarization free energy of solvation -33.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds