Wall clock time and date at job start Wed Apr 1 2020 00:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47000 * 2 1 4 4 O 1.42897 * 109.46960 * 179.97438 * 3 2 1 5 5 C 1.42899 * 114.00297 * 179.97438 * 4 3 2 6 6 C 1.50694 * 109.47605 * 179.97438 * 5 4 3 7 7 O 1.21285 * 120.00263 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00151 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99966 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.46912 * 184.97960 * 9 8 6 11 11 H 1.08998 * 109.45987 * 186.08978 * 10 9 8 12 12 C 1.53034 * 109.46496 * 66.12448 * 10 9 8 13 13 C 1.53123 * 109.27909 * 180.80553 * 12 10 9 14 14 C 1.53109 * 109.16093 * 57.65338 * 13 12 10 15 15 C 1.53040 * 109.27991 * 302.34323 * 14 13 12 16 16 N 1.46844 * 109.46249 * 306.06588 * 10 9 8 17 17 C 1.46897 * 111.00375 * 305.86132 * 16 10 9 18 18 C 1.50695 * 109.47222 * 164.00593 * 17 16 10 19 19 O 1.21297 * 120.00247 * 359.97438 * 18 17 16 20 20 N 1.34784 * 120.00083 * 179.97438 * 18 17 16 21 21 C 1.37091 * 120.00078 * 179.97438 * 20 18 17 22 22 H 1.08002 * 120.00205 * 0.02562 * 21 20 18 23 23 C 1.38946 * 120.00109 * 180.27705 * 21 20 18 24 24 N 1.31416 * 120.00523 * 179.73066 * 23 21 20 25 25 Si 1.86801 * 119.99938 * 359.72488 * 23 21 20 26 26 H 1.48506 * 109.47055 * 90.00043 * 25 23 21 27 27 H 1.48497 * 109.47358 * 210.00054 * 25 23 21 28 28 H 1.48503 * 109.47185 * 330.00506 * 25 23 21 29 29 H 1.08998 * 109.47143 * 60.00611 * 1 2 3 30 30 H 1.09005 * 109.47190 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47387 * 300.00055 * 1 2 3 32 32 H 1.08997 * 109.47004 * 239.99570 * 2 1 3 33 33 H 1.09003 * 109.46956 * 120.00097 * 2 1 3 34 34 H 1.08997 * 109.47593 * 59.99930 * 3 2 1 35 35 H 1.09000 * 109.47103 * 299.99386 * 3 2 1 36 36 H 1.09000 * 109.46618 * 59.99885 * 5 4 3 37 37 H 1.09005 * 109.47463 * 300.00492 * 5 4 3 38 38 H 0.96995 * 120.00148 * 359.97438 * 8 6 5 39 39 H 1.08995 * 109.47293 * 64.97585 * 9 8 6 40 40 H 1.08998 * 109.46977 * 304.97426 * 9 8 6 41 41 H 1.09004 * 109.50489 * 300.74567 * 12 10 9 42 42 H 1.09003 * 109.50520 * 60.81902 * 12 10 9 43 43 H 1.08997 * 109.51666 * 177.56052 * 13 12 10 44 44 H 1.09006 * 109.51845 * 297.68059 * 13 12 10 45 45 H 1.09002 * 109.50540 * 62.28678 * 14 13 12 46 46 H 1.09002 * 109.50422 * 182.37110 * 14 13 12 47 47 H 1.08994 * 109.46618 * 299.16861 * 15 14 13 48 48 H 1.08997 * 109.46394 * 179.19755 * 15 14 13 49 49 H 1.09003 * 109.47446 * 44.00308 * 17 16 10 50 50 H 1.09005 * 109.46816 * 284.00195 * 17 16 10 51 51 H 0.97000 * 119.99563 * 0.02562 * 20 18 17 52 52 H 0.96991 * 120.00220 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4689 1.4425 0.0006 5 6 4.0502 2.7479 0.0001 6 6 5.5525 2.6289 0.0014 7 8 6.0742 1.5340 0.0022 8 7 6.3164 3.7393 0.0017 9 6 7.7769 3.6236 0.0024 10 6 8.3987 5.0159 0.1278 11 1 9.4807 4.9414 0.0199 12 6 8.0626 5.6027 1.5007 13 6 8.6698 7.0039 1.6140 14 6 8.1305 7.8785 0.4789 15 6 8.4647 7.2258 -0.8644 16 7 7.8610 5.8884 -0.9238 17 6 8.0436 5.2868 -2.2515 18 6 7.1571 5.9890 -3.2474 19 8 6.4429 6.9006 -2.8866 20 7 7.1577 5.6040 -4.5391 21 6 6.3508 6.2424 -5.4450 22 1 5.7148 7.0541 -5.1238 23 6 6.3471 5.8418 -6.7755 24 7 5.5697 6.4502 -7.6429 25 14 7.4475 4.4383 -7.3313 26 1 6.7147 3.1533 -7.2008 27 1 7.8353 4.6452 -8.7497 28 1 8.6672 4.4006 -6.4850 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 3.7282 3.2893 0.8896 37 1 3.7290 3.2884 -0.8903 38 1 5.8993 4.6150 0.0007 39 1 8.1052 3.1615 -0.9285 40 1 8.0921 3.0078 0.8447 41 1 6.9804 5.6648 1.6149 42 1 8.4747 4.9626 2.2808 43 1 8.3963 7.4427 2.5735 44 1 9.7553 6.9375 1.5399 45 1 7.0494 7.9764 0.5770 46 1 8.5914 8.8650 0.5292 47 1 9.5464 7.1408 -0.9678 48 1 8.0696 7.8389 -1.6744 49 1 7.7791 4.2301 -2.2111 50 1 9.0851 5.3893 -2.5566 51 1 7.7286 4.8747 -4.8275 52 1 5.5675 6.1708 -8.5717 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480309236.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:20 Heat of formation + Delta-G solvation = -143.281961 kcal Electronic energy + Delta-G solvation = -31012.766962 eV Core-core repulsion = 26818.165621 eV Total energy + Delta-G solvation = -4194.601342 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.30994 -40.46936 -39.43893 -38.65253 -36.02129 -35.74464 -34.59412 -34.37058 -33.69084 -32.33418 -29.63793 -29.10697 -27.26527 -26.37631 -25.98992 -24.06191 -22.56104 -22.36530 -21.72019 -21.21263 -20.38928 -20.14689 -18.29645 -17.98865 -17.70672 -17.51620 -16.92399 -16.85433 -16.49124 -16.36192 -16.04919 -15.54017 -15.44861 -15.27151 -14.97489 -14.87688 -14.73081 -14.49104 -14.37291 -14.25806 -13.86616 -13.70944 -13.28432 -13.12590 -13.07391 -12.96900 -12.89626 -12.80736 -12.68289 -12.41601 -12.10825 -12.00558 -11.85425 -11.80298 -11.57168 -11.53032 -11.27302 -11.19909 -10.88068 -10.70895 -10.33862 -10.21826 -10.02275 -9.22104 -8.41146 -6.00286 1.27687 1.32969 1.40459 1.57290 1.85865 1.98168 2.20862 2.55774 3.01097 3.14719 3.22329 3.66960 3.78961 3.84004 4.00370 4.01431 4.09644 4.10247 4.21294 4.25679 4.27410 4.33025 4.36469 4.40199 4.40884 4.47024 4.55348 4.62263 4.63095 4.67527 4.76556 4.84649 4.93918 5.00166 5.06864 5.13179 5.13800 5.21918 5.29062 5.33844 5.36584 5.44214 5.52580 5.55641 5.91995 6.04157 6.06650 6.21779 6.57006 6.60763 6.90189 7.22582 7.41961 7.98684 8.76298 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.006143 B = 0.003932 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4557.043767 B = 7118.737916 C =10519.183521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.123 4.123 3 C 0.053 3.947 4 O -0.396 6.396 5 C 0.043 3.957 6 C 0.511 3.489 7 O -0.574 6.574 8 N -0.703 5.703 9 C 0.124 3.876 10 C 0.077 3.923 11 H 0.074 0.926 12 C -0.106 4.106 13 C -0.113 4.113 14 C -0.110 4.110 15 C 0.060 3.940 16 N -0.521 5.521 17 C 0.047 3.953 18 C 0.457 3.543 19 O -0.596 6.596 20 N -0.598 5.598 21 C -0.320 4.320 22 H 0.060 0.940 23 C -0.012 4.012 24 N -0.934 5.934 25 Si 0.956 3.044 26 H -0.262 1.262 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.110 0.890 37 H 0.087 0.913 38 H 0.416 0.584 39 H 0.060 0.940 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.056 0.944 46 H 0.072 0.928 47 H 0.039 0.961 48 H 0.051 0.949 49 H 0.108 0.892 50 H 0.074 0.926 51 H 0.385 0.615 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.929 -7.646 21.087 22.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C -0.023 4.023 4 O -0.315 6.315 5 C -0.037 4.037 6 C 0.297 3.703 7 O -0.454 6.454 8 N -0.357 5.357 9 C 0.000 4.000 10 C -0.031 4.031 11 H 0.092 0.908 12 C -0.144 4.144 13 C -0.150 4.150 14 C -0.148 4.148 15 C -0.068 4.068 16 N -0.247 5.247 17 C -0.084 4.084 18 C 0.245 3.755 19 O -0.479 6.479 20 N -0.240 5.240 21 C -0.449 4.449 22 H 0.078 0.922 23 C -0.211 4.211 24 N -0.575 5.575 25 Si 0.777 3.223 26 H -0.187 1.187 27 H -0.199 1.199 28 H -0.158 1.158 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.127 0.873 37 H 0.104 0.896 38 H 0.253 0.747 39 H 0.078 0.922 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.075 0.925 46 H 0.091 0.909 47 H 0.058 0.942 48 H 0.070 0.930 49 H 0.126 0.874 50 H 0.092 0.908 51 H 0.220 0.780 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.361 -7.879 21.226 22.764 hybrid contribution 0.701 0.131 -1.504 1.665 sum 3.062 -7.748 19.722 21.409 Atomic orbital electron populations 1.21675 0.92947 1.02971 1.02618 1.21471 0.97055 0.94857 1.02730 1.22845 0.79057 0.98997 1.01421 1.87938 1.21385 1.26468 1.95730 1.22286 0.90266 0.86636 1.04477 1.20624 0.89699 0.84196 0.75768 1.90681 1.75584 1.28169 1.50923 1.45753 1.07032 1.08954 1.73998 1.21550 0.79488 0.96633 1.02352 1.22025 0.97932 0.90517 0.92623 0.90827 1.21623 1.01850 0.96694 0.94209 1.21550 1.00406 0.94755 0.98323 1.21521 1.01362 0.98717 0.93216 1.22079 0.96043 0.89444 0.99218 1.61392 1.59367 1.02753 1.01185 1.21881 0.97946 0.99524 0.89049 1.20756 0.86143 0.85906 0.82699 1.90528 1.45328 1.33013 1.79042 1.42101 1.40167 1.33743 1.07981 1.18977 1.20279 1.16083 0.89596 0.92160 1.25978 0.98953 1.01061 0.95101 1.69786 1.40138 1.43276 1.04285 0.85488 0.79505 0.78266 0.79073 1.18714 1.19922 1.15823 0.92331 0.91218 0.91500 0.92353 0.91393 0.91263 0.92750 0.87256 0.89563 0.74656 0.92223 0.89622 0.91532 0.89358 0.90392 0.91272 0.92482 0.90943 0.94246 0.93016 0.87405 0.90798 0.78020 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.91 71.98 0.71 -1.20 16 2 C -0.12 -2.26 6.30 30.59 0.19 -2.07 16 3 C 0.05 1.06 5.94 71.98 0.43 1.49 16 4 O -0.40 -10.93 9.88 -129.95 -1.28 -12.21 16 5 C 0.04 1.00 6.42 71.23 0.46 1.46 16 6 C 0.51 14.33 7.91 87.65 0.69 15.02 16 7 O -0.57 -20.84 16.50 15.99 0.26 -20.57 16 8 N -0.70 -16.37 5.08 -463.06 -2.35 -18.72 16 9 C 0.12 2.56 4.58 86.38 0.40 2.96 16 10 C 0.08 1.42 2.11 44.94 0.09 1.52 16 11 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 12 C -0.11 -1.59 5.27 30.65 0.16 -1.43 16 13 C -0.11 -1.66 6.00 30.67 0.18 -1.48 16 14 C -0.11 -2.30 6.09 30.64 0.19 -2.11 16 15 C 0.06 1.58 5.11 86.33 0.44 2.02 16 16 N -0.52 -13.52 3.44 -875.66 -3.01 -16.53 16 17 C 0.05 1.41 5.26 85.56 0.45 1.86 16 18 C 0.46 19.90 7.47 87.65 0.65 20.56 16 19 O -0.60 -30.91 14.41 -3.08 -0.04 -30.95 16 20 N -0.60 -28.05 5.09 -306.98 -1.56 -29.61 16 21 C -0.32 -18.53 10.16 84.04 0.85 -17.67 16 22 H 0.06 4.12 7.39 -2.91 -0.02 4.10 16 23 C -0.01 -0.68 5.50 84.92 0.47 -0.22 16 24 N -0.93 -56.23 13.96 21.66 0.30 -55.93 16 25 Si 0.96 39.72 27.73 68.60 1.90 41.62 16 26 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 28 H -0.23 -8.33 6.53 99.48 0.65 -7.69 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 38 H 0.42 9.42 7.45 -92.71 -0.69 8.73 16 39 H 0.06 1.36 6.36 -2.39 -0.02 1.35 16 40 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.07 1.10 7.36 -2.39 -0.02 1.09 16 42 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 45 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.05 1.84 6.34 -2.39 -0.02 1.82 16 49 H 0.11 2.98 5.52 -2.39 -0.01 2.97 16 50 H 0.07 1.91 8.06 -2.38 -0.02 1.89 16 51 H 0.39 15.47 5.77 -92.71 -0.53 14.94 16 52 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -79.34 411.79 0.22 -79.12 By element: Atomic # 1 Polarization: 43.45 SS G_CDS: -0.36 Total: 43.09 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: 6.37 Total: 20.70 kcal Atomic # 7 Polarization: -114.17 SS G_CDS: -6.62 Total: -120.79 kcal Atomic # 8 Polarization: -62.67 SS G_CDS: -1.06 Total: -63.74 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 1.90 Total: 41.62 kcal Total: -79.34 0.22 -79.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480309236.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.164 kcal (2) G-P(sol) polarization free energy of solvation -79.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds