Wall clock time and date at job start Wed Apr 1 2020 00:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99763 * 2 1 4 4 C 1.52999 * 109.47144 * 180.02562 * 3 2 1 5 5 C 1.50707 * 109.47008 * 179.97438 * 4 3 2 6 6 O 1.21276 * 120.00281 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99999 * 179.97438 * 5 4 3 8 8 C 1.46929 * 120.62706 * 5.95419 * 7 5 4 9 9 C 1.53194 * 108.77090 * 126.36849 * 8 7 5 10 10 C 1.53034 * 109.31507 * 54.63785 * 9 8 7 11 11 C 1.53043 * 109.53540 * 298.63336 * 10 9 8 12 12 H 1.08998 * 109.49613 * 301.41225 * 11 10 9 13 13 C 1.53007 * 109.49945 * 181.31937 * 11 10 9 14 14 C 1.46917 * 120.63229 * 185.93139 * 7 5 4 15 15 H 1.09008 * 109.70414 * 113.77545 * 14 7 5 16 16 C 1.52999 * 109.58601 * 353.42001 * 14 7 5 17 17 N 1.46906 * 109.47174 * 69.40376 * 16 14 7 18 18 C 1.46897 * 110.99795 * 179.97438 * 17 16 14 19 19 C 1.50707 * 109.46858 * 179.97438 * 18 17 16 20 20 O 1.21293 * 119.99665 * 0.02562 * 19 18 17 21 21 N 1.34772 * 120.00062 * 179.97438 * 19 18 17 22 22 C 1.37096 * 120.00481 * 180.02562 * 21 19 18 23 23 H 1.08004 * 119.99590 * 359.97438 * 22 21 19 24 24 C 1.38946 * 120.00680 * 179.97438 * 22 21 19 25 25 N 1.31411 * 119.99916 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00366 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47038 * 180.02562 * 26 24 22 28 28 H 1.48501 * 109.47005 * 59.99874 * 26 24 22 29 29 H 1.48507 * 109.46941 * 300.00070 * 26 24 22 30 30 H 1.08997 * 109.46893 * 299.99788 * 1 2 3 31 31 H 1.08994 * 109.47038 * 60.00423 * 1 2 3 32 32 H 1.09000 * 109.46373 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47626 * 59.99757 * 3 2 1 34 34 H 1.09006 * 109.47229 * 299.99963 * 3 2 1 35 35 H 1.08996 * 109.47216 * 60.00055 * 4 3 2 36 36 H 1.08997 * 109.46948 * 299.99409 * 4 3 2 37 37 H 1.08997 * 109.59129 * 6.58232 * 8 7 5 38 38 H 1.09001 * 109.58677 * 246.15410 * 8 7 5 39 39 H 1.08999 * 109.50250 * 294.68234 * 9 8 7 40 40 H 1.09004 * 109.49688 * 174.58783 * 9 8 7 41 41 H 1.08995 * 109.46561 * 178.61435 * 10 9 8 42 42 H 1.09003 * 109.45224 * 58.64344 * 10 9 8 43 43 H 1.09007 * 109.46466 * 300.15582 * 13 11 10 44 44 H 1.08993 * 109.47147 * 60.15780 * 13 11 10 45 45 H 1.09001 * 109.47308 * 180.16281 * 13 11 10 46 46 H 1.09000 * 109.47336 * 309.39919 * 16 14 7 47 47 H 1.09001 * 109.47214 * 189.39658 * 16 14 7 48 48 H 1.00893 * 110.99934 * 56.04638 * 17 16 14 49 49 H 1.08998 * 109.47583 * 59.99874 * 18 17 16 50 50 H 1.08998 * 109.47532 * 299.99504 * 18 17 16 51 51 H 0.97008 * 119.99933 * 359.97438 * 21 19 18 52 52 H 0.97003 * 119.99809 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1483 2.5615 -0.0013 6 8 3.4355 3.5427 -0.0017 7 7 5.4887 2.7025 -0.0014 8 6 6.3647 1.5301 -0.1321 9 6 7.3363 1.7676 -1.2924 10 6 8.0802 3.0860 -1.0679 11 6 7.0763 4.2408 -1.0345 12 1 6.5223 4.2684 -1.9728 13 6 7.8238 5.5620 -0.8430 14 6 6.1017 4.0314 0.1286 15 1 6.6412 4.0964 1.0736 16 6 5.0126 5.1051 0.0849 17 7 4.2038 5.0323 1.3091 18 6 3.1459 6.0515 1.3024 19 6 2.3386 5.9458 2.5706 20 8 2.6175 5.1046 3.3987 21 7 1.3074 6.7867 2.7851 22 6 0.5733 6.6910 3.9389 23 1 0.8211 5.9415 4.6760 24 6 -0.4894 7.5583 4.1603 25 7 -0.7913 8.4700 3.2633 26 14 -1.4901 7.4274 5.7322 27 1 -2.5592 8.4580 5.7257 28 1 -0.6024 7.6415 6.9033 29 1 -2.1045 6.0780 5.8169 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.6886 1.8465 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 3.8567 0.6440 -0.8908 36 1 3.8574 0.6438 0.8891 37 1 5.7623 0.6447 -0.3352 38 1 6.9260 1.3887 0.7915 39 1 6.7799 1.8186 -2.2283 40 1 8.0539 0.9485 -1.3394 41 1 8.7899 3.2454 -1.8796 42 1 8.6163 3.0435 -0.1198 43 1 8.3786 5.5328 0.0949 44 1 8.5171 5.7105 -1.6708 45 1 7.1082 6.3838 -0.8164 46 1 4.3740 4.9398 -0.7829 47 1 5.4754 6.0893 0.0133 48 1 4.7830 5.1183 2.1307 49 1 2.4943 5.8932 0.4431 50 1 3.5960 7.0421 1.2394 51 1 1.0851 7.4602 2.1232 52 1 -0.2719 8.5377 2.4469 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482478832.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:04 Heat of formation + Delta-G solvation = -88.140963 kcal Electronic energy + Delta-G solvation = -31717.937947 eV Core-core repulsion = 27525.727699 eV Total energy + Delta-G solvation = -4192.210249 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.65884 -38.22027 -38.09599 -37.30647 -35.46075 -34.16256 -33.71926 -32.08713 -31.57657 -30.91513 -28.25651 -26.70490 -26.49892 -25.52635 -24.17019 -23.25424 -22.79539 -21.43659 -20.48488 -19.55107 -18.91097 -17.77048 -17.18599 -16.40422 -16.20464 -16.08828 -15.85398 -15.40424 -15.00234 -14.91013 -14.81338 -14.58123 -14.25431 -13.85455 -13.78695 -13.52772 -13.40241 -13.34966 -12.98520 -12.87446 -12.60542 -12.59962 -12.11379 -12.00120 -11.73721 -11.72659 -11.40942 -11.35612 -11.21309 -11.15406 -11.10481 -10.98233 -10.87694 -10.85697 -10.49387 -10.15644 -9.77001 -9.62661 -9.43545 -8.79009 -8.52033 -8.26840 -7.92058 -7.55949 -6.65458 -3.77429 2.88799 3.00941 3.37504 3.39235 3.60013 3.81796 4.01728 4.21384 4.38570 4.41439 4.50383 4.66047 4.78890 4.86903 4.97311 5.02086 5.08986 5.15532 5.18234 5.27899 5.32571 5.35927 5.37460 5.39760 5.42800 5.42895 5.48963 5.52422 5.58549 5.64929 5.66874 5.68143 5.81665 5.83954 5.84448 5.93104 5.95815 5.96782 6.06841 6.13555 6.21055 6.31300 6.65794 7.14492 7.45598 7.57391 7.90909 7.95290 8.18598 8.56667 8.73440 8.93596 9.60634 10.03722 10.78482 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010003 B = 0.003250 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.614044 B = 8612.992874 C =10850.675060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.400 6.400 3 C 0.076 3.924 4 C -0.134 4.134 5 C 0.509 3.491 6 O -0.469 6.469 7 N -0.613 5.613 8 C 0.109 3.891 9 C -0.135 4.135 10 C -0.113 4.113 11 C -0.101 4.101 12 H 0.074 0.926 13 C -0.148 4.148 14 C 0.160 3.840 15 H 0.068 0.932 16 C 0.069 3.931 17 N -0.634 5.634 18 C 0.064 3.936 19 C 0.451 3.549 20 O -0.577 6.577 21 N -0.581 5.581 22 C -0.379 4.379 23 H 0.097 0.903 24 C -0.012 4.012 25 N -0.905 5.905 26 Si 1.091 2.909 27 H -0.280 1.280 28 H -0.285 1.285 29 H -0.285 1.285 30 H 0.045 0.955 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.061 0.939 46 H 0.093 0.907 47 H 0.018 0.982 48 H 0.328 0.672 49 H 0.086 0.914 50 H 0.030 0.970 51 H 0.374 0.626 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.365 -13.158 -13.367 24.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.319 6.319 3 C -0.001 4.001 4 C -0.174 4.174 5 C 0.295 3.705 6 O -0.339 6.339 7 N -0.349 5.349 8 C -0.015 4.015 9 C -0.174 4.174 10 C -0.151 4.151 11 C -0.121 4.121 12 H 0.093 0.907 13 C -0.206 4.206 14 C 0.056 3.944 15 H 0.086 0.914 16 C -0.060 4.060 17 N -0.267 5.267 18 C -0.069 4.069 19 C 0.237 3.763 20 O -0.460 6.460 21 N -0.220 5.220 22 C -0.508 4.508 23 H 0.114 0.886 24 C -0.214 4.214 25 N -0.545 5.545 26 Si 0.917 3.083 27 H -0.205 1.205 28 H -0.211 1.211 29 H -0.211 1.211 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.111 0.889 47 H 0.036 0.964 48 H 0.147 0.853 49 H 0.104 0.896 50 H 0.048 0.952 51 H 0.207 0.793 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.500 -13.191 -12.181 23.078 hybrid contribution 1.664 0.645 -1.082 2.087 sum 16.165 -12.546 -13.263 24.384 Atomic orbital electron populations 1.22710 0.80691 1.02366 1.00481 1.87741 1.20021 1.28467 1.95647 1.22185 0.91893 0.83868 1.02115 1.21480 0.95452 0.96161 1.04346 1.20111 0.81841 0.90776 0.77726 1.90844 1.60253 1.38428 1.44361 1.47805 1.05272 1.06615 1.75249 1.21676 0.92957 0.88527 0.98320 1.21930 0.98532 0.97978 0.98922 1.21565 0.97441 0.93968 1.02095 1.21506 0.96217 0.95264 0.99119 0.90719 1.21866 1.00284 0.96630 1.01831 1.21190 0.93340 0.82544 0.97303 0.91449 1.22212 0.93203 0.94019 0.96596 1.60311 1.13843 1.49896 1.02622 1.21494 0.94823 0.92358 0.98206 1.19854 0.83536 0.84286 0.88641 1.90500 1.70637 1.37578 1.47301 1.41942 1.28634 1.31463 1.19955 1.20504 1.12706 1.19882 0.97743 0.88555 1.26457 0.96699 0.93147 1.05083 1.70887 1.40998 1.33502 1.09125 0.83141 0.75752 0.76344 0.73038 1.20476 1.21122 1.21104 0.93642 0.94123 0.89820 0.91647 0.92802 0.89200 0.88720 0.89730 0.91662 0.91531 0.90854 0.91733 0.91742 0.92500 0.92445 0.92012 0.88901 0.96427 0.85330 0.89630 0.95202 0.79275 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.40 -5.50 10.70 -35.23 -0.38 -5.88 16 3 C 0.08 1.08 5.23 37.16 0.19 1.28 16 4 C -0.13 -1.61 4.49 -27.88 -0.13 -1.74 16 5 C 0.51 7.12 7.38 -10.98 -0.08 7.03 16 6 O -0.47 -8.20 9.48 5.56 0.05 -8.15 16 7 N -0.61 -6.92 2.97 -165.22 -0.49 -7.41 16 8 C 0.11 0.86 6.32 -3.71 -0.02 0.84 16 9 C -0.14 -0.87 6.08 -26.61 -0.16 -1.04 16 10 C -0.11 -0.78 5.17 -26.69 -0.14 -0.92 16 11 C -0.10 -0.87 2.34 -90.50 -0.21 -1.08 16 12 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 13 C -0.15 -1.17 8.98 37.16 0.33 -0.83 16 14 C 0.16 1.80 2.54 -67.61 -0.17 1.63 16 15 H 0.07 0.79 8.12 -51.92 -0.42 0.37 16 16 C 0.07 0.96 4.22 -3.82 -0.02 0.94 16 17 N -0.63 -11.38 3.55 -115.05 -0.41 -11.79 16 18 C 0.06 1.27 5.78 -4.97 -0.03 1.24 16 19 C 0.45 11.49 7.82 -10.98 -0.09 11.40 16 20 O -0.58 -16.72 15.78 5.55 0.09 -16.63 16 21 N -0.58 -15.59 5.28 -10.96 -0.06 -15.65 16 22 C -0.38 -11.18 9.68 -14.94 -0.14 -11.32 16 23 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 24 C -0.01 -0.34 5.50 -17.47 -0.10 -0.44 16 25 N -0.91 -26.39 13.68 55.50 0.76 -25.63 16 26 Si 1.09 25.24 29.92 -169.99 -5.09 20.15 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 29 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 34 H 0.05 0.77 8.10 -51.93 -0.42 0.34 16 35 H 0.09 0.87 7.44 -51.93 -0.39 0.48 16 36 H 0.09 1.09 8.13 -51.93 -0.42 0.67 16 37 H 0.08 0.58 5.97 -51.93 -0.31 0.27 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 46 H 0.09 1.44 6.30 -51.93 -0.33 1.11 16 47 H 0.02 0.23 6.25 -51.93 -0.32 -0.09 16 48 H 0.33 6.12 8.41 -39.30 -0.33 5.79 16 49 H 0.09 1.70 7.88 -51.93 -0.41 1.29 16 50 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.37 9.37 6.73 -40.82 -0.27 9.10 16 52 H 0.26 7.35 6.78 -40.82 -0.28 7.07 16 LS Contribution 404.73 15.07 6.10 6.10 Total: -1.00 -35.47 404.73 -7.97 -43.43 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: -8.90 Total: 12.95 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 0.36 Total: 8.51 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: -0.20 Total: -60.49 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.24 Total: -30.66 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -5.09 Total: 20.15 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.47 -7.97 -43.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482478832.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.707 kcal (2) G-P(sol) polarization free energy of solvation -35.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds