Wall clock time and date at job start Wed Apr 1 2020 00:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99763 * 2 1 4 4 C 1.52999 * 109.47144 * 180.02562 * 3 2 1 5 5 C 1.50707 * 109.47008 * 179.97438 * 4 3 2 6 6 O 1.21276 * 120.00281 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99999 * 179.97438 * 5 4 3 8 8 C 1.46929 * 120.62706 * 5.95419 * 7 5 4 9 9 C 1.53194 * 108.77090 * 126.36849 * 8 7 5 10 10 C 1.53034 * 109.31507 * 54.63785 * 9 8 7 11 11 C 1.53043 * 109.53540 * 298.63336 * 10 9 8 12 12 H 1.08998 * 109.49613 * 301.41225 * 11 10 9 13 13 C 1.53007 * 109.49945 * 181.31937 * 11 10 9 14 14 C 1.46917 * 120.63229 * 185.93139 * 7 5 4 15 15 H 1.09008 * 109.70414 * 113.77545 * 14 7 5 16 16 C 1.52999 * 109.58601 * 353.42001 * 14 7 5 17 17 N 1.46906 * 109.47174 * 69.40376 * 16 14 7 18 18 C 1.46897 * 110.99795 * 179.97438 * 17 16 14 19 19 C 1.50707 * 109.46858 * 179.97438 * 18 17 16 20 20 O 1.21293 * 119.99665 * 0.02562 * 19 18 17 21 21 N 1.34772 * 120.00062 * 179.97438 * 19 18 17 22 22 C 1.37096 * 120.00481 * 180.02562 * 21 19 18 23 23 H 1.08004 * 119.99590 * 359.97438 * 22 21 19 24 24 C 1.38946 * 120.00680 * 179.97438 * 22 21 19 25 25 N 1.31411 * 119.99916 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00366 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47038 * 180.02562 * 26 24 22 28 28 H 1.48501 * 109.47005 * 59.99874 * 26 24 22 29 29 H 1.48507 * 109.46941 * 300.00070 * 26 24 22 30 30 H 1.08997 * 109.46893 * 299.99788 * 1 2 3 31 31 H 1.08994 * 109.47038 * 60.00423 * 1 2 3 32 32 H 1.09000 * 109.46373 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47626 * 59.99757 * 3 2 1 34 34 H 1.09006 * 109.47229 * 299.99963 * 3 2 1 35 35 H 1.08996 * 109.47216 * 60.00055 * 4 3 2 36 36 H 1.08997 * 109.46948 * 299.99409 * 4 3 2 37 37 H 1.08997 * 109.59129 * 6.58232 * 8 7 5 38 38 H 1.09001 * 109.58677 * 246.15410 * 8 7 5 39 39 H 1.08999 * 109.50250 * 294.68234 * 9 8 7 40 40 H 1.09004 * 109.49688 * 174.58783 * 9 8 7 41 41 H 1.08995 * 109.46561 * 178.61435 * 10 9 8 42 42 H 1.09003 * 109.45224 * 58.64344 * 10 9 8 43 43 H 1.09007 * 109.46466 * 300.15582 * 13 11 10 44 44 H 1.08993 * 109.47147 * 60.15780 * 13 11 10 45 45 H 1.09001 * 109.47308 * 180.16281 * 13 11 10 46 46 H 1.09000 * 109.47336 * 309.39919 * 16 14 7 47 47 H 1.09001 * 109.47214 * 189.39658 * 16 14 7 48 48 H 1.00893 * 110.99934 * 56.04638 * 17 16 14 49 49 H 1.08998 * 109.47583 * 59.99874 * 18 17 16 50 50 H 1.08998 * 109.47532 * 299.99504 * 18 17 16 51 51 H 0.97008 * 119.99933 * 359.97438 * 21 19 18 52 52 H 0.97003 * 119.99809 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1483 2.5615 -0.0013 6 8 3.4355 3.5427 -0.0017 7 7 5.4887 2.7025 -0.0014 8 6 6.3647 1.5301 -0.1321 9 6 7.3363 1.7676 -1.2924 10 6 8.0802 3.0860 -1.0679 11 6 7.0763 4.2408 -1.0345 12 1 6.5223 4.2684 -1.9728 13 6 7.8238 5.5620 -0.8430 14 6 6.1017 4.0314 0.1286 15 1 6.6412 4.0964 1.0736 16 6 5.0126 5.1051 0.0849 17 7 4.2038 5.0323 1.3091 18 6 3.1459 6.0515 1.3024 19 6 2.3386 5.9458 2.5706 20 8 2.6175 5.1046 3.3987 21 7 1.3074 6.7867 2.7851 22 6 0.5733 6.6910 3.9389 23 1 0.8211 5.9415 4.6760 24 6 -0.4894 7.5583 4.1603 25 7 -0.7913 8.4700 3.2633 26 14 -1.4901 7.4274 5.7322 27 1 -2.5592 8.4580 5.7257 28 1 -0.6024 7.6415 6.9033 29 1 -2.1045 6.0780 5.8169 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.6886 1.8465 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 3.8567 0.6440 -0.8908 36 1 3.8574 0.6438 0.8891 37 1 5.7623 0.6447 -0.3352 38 1 6.9260 1.3887 0.7915 39 1 6.7799 1.8186 -2.2283 40 1 8.0539 0.9485 -1.3394 41 1 8.7899 3.2454 -1.8796 42 1 8.6163 3.0435 -0.1198 43 1 8.3786 5.5328 0.0949 44 1 8.5171 5.7105 -1.6708 45 1 7.1082 6.3838 -0.8164 46 1 4.3740 4.9398 -0.7829 47 1 5.4754 6.0893 0.0133 48 1 4.7830 5.1183 2.1307 49 1 2.4943 5.8932 0.4431 50 1 3.5960 7.0421 1.2394 51 1 1.0851 7.4602 2.1232 52 1 -0.2719 8.5377 2.4469 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482478832.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:03 Heat of formation + Delta-G solvation = -113.748091 kcal Electronic energy + Delta-G solvation = -31719.048356 eV Core-core repulsion = 27525.727699 eV Total energy + Delta-G solvation = -4193.320657 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.62060 -40.24752 -39.11002 -38.28896 -36.88434 -36.13596 -34.70211 -33.24651 -32.87796 -32.55440 -29.46701 -27.86390 -27.31288 -26.80321 -25.79828 -24.57956 -23.75550 -22.32018 -21.55867 -21.16258 -20.02892 -19.89014 -18.29745 -17.99687 -17.33310 -17.17747 -16.93618 -16.88011 -16.40260 -16.16069 -15.77567 -15.68125 -15.63656 -15.47669 -14.95727 -14.75060 -14.64612 -14.30360 -14.21666 -13.92973 -13.60920 -13.50244 -13.35169 -13.29609 -13.08047 -12.83794 -12.74760 -12.70305 -12.49185 -12.37866 -12.17082 -11.93360 -11.92682 -11.91185 -11.68701 -11.53806 -11.52065 -11.23228 -10.73551 -10.38976 -10.12529 -9.89460 -9.45960 -8.95380 -8.90705 -6.08343 1.50865 1.51293 1.80551 1.89326 2.00595 2.03887 2.39661 2.84474 2.85861 3.15014 3.45364 3.63793 3.81150 3.92405 3.95529 4.01387 4.08681 4.14128 4.18104 4.24084 4.28214 4.33902 4.44002 4.46488 4.48559 4.51901 4.55146 4.60632 4.68714 4.73518 4.76526 4.79349 4.83971 4.86032 4.92125 4.94079 5.07290 5.17682 5.23066 5.27525 5.34358 5.52342 5.57077 5.77042 5.92356 6.07412 6.09257 6.52208 6.58236 6.63110 6.74048 7.42982 7.53083 7.92065 8.52316 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010003 B = 0.003250 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.614044 B = 8612.992874 C =10850.675060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.083 3.917 4 C -0.125 4.125 5 C 0.500 3.500 6 O -0.515 6.515 7 N -0.610 5.610 8 C 0.101 3.899 9 C -0.129 4.129 10 C -0.111 4.111 11 C -0.093 4.093 12 H 0.068 0.932 13 C -0.146 4.146 14 C 0.160 3.840 15 H 0.065 0.935 16 C 0.076 3.924 17 N -0.643 5.643 18 C 0.082 3.918 19 C 0.448 3.552 20 O -0.615 6.615 21 N -0.590 5.590 22 C -0.410 4.410 23 H 0.071 0.929 24 C -0.044 4.044 25 N -0.917 5.917 26 Si 1.135 2.865 27 H -0.270 1.270 28 H -0.271 1.271 29 H -0.274 1.274 30 H 0.032 0.968 31 H 0.048 0.952 32 H 0.111 0.889 33 H 0.025 0.975 34 H 0.049 0.951 35 H 0.121 0.879 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.050 0.950 46 H 0.078 0.922 47 H 0.030 0.970 48 H 0.321 0.679 49 H 0.087 0.913 50 H 0.053 0.947 51 H 0.382 0.618 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.051 -14.266 -14.384 27.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C 0.006 3.994 4 C -0.165 4.165 5 C 0.288 3.712 6 O -0.389 6.389 7 N -0.345 5.345 8 C -0.021 4.021 9 C -0.167 4.167 10 C -0.148 4.148 11 C -0.113 4.113 12 H 0.086 0.914 13 C -0.204 4.204 14 C 0.056 3.944 15 H 0.083 0.917 16 C -0.053 4.053 17 N -0.275 5.275 18 C -0.051 4.051 19 C 0.236 3.764 20 O -0.501 6.501 21 N -0.229 5.229 22 C -0.539 4.539 23 H 0.089 0.911 24 C -0.241 4.241 25 N -0.557 5.557 26 Si 0.954 3.046 27 H -0.195 1.195 28 H -0.196 1.196 29 H -0.199 1.199 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.129 0.871 33 H 0.043 0.957 34 H 0.068 0.932 35 H 0.139 0.861 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.115 0.885 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.069 0.931 46 H 0.097 0.903 47 H 0.048 0.952 48 H 0.139 0.861 49 H 0.105 0.895 50 H 0.070 0.930 51 H 0.216 0.784 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 16.243 -14.313 -13.246 25.380 hybrid contribution 1.179 0.943 -0.816 1.716 sum 17.422 -13.370 -14.062 26.077 Atomic orbital electron populations 1.22914 0.79617 1.04115 1.00275 1.87727 1.21282 1.27867 1.95564 1.22024 0.93618 0.83829 0.99923 1.21429 0.93561 0.95476 1.06052 1.20506 0.82607 0.90986 0.77116 1.90822 1.61459 1.39803 1.46791 1.47906 1.04879 1.07762 1.73947 1.21971 0.93053 0.87560 0.99513 1.21905 0.98438 0.98560 0.97812 1.21569 0.97096 0.93225 1.02919 1.21441 0.95943 0.96668 0.97223 0.91399 1.21853 1.00200 0.95714 1.02642 1.21214 0.92758 0.81857 0.98545 0.91742 1.22174 0.93169 0.95812 0.94104 1.60334 1.14040 1.49333 1.03802 1.21279 0.94917 0.94199 0.94657 1.20863 0.82997 0.82804 0.89781 1.90462 1.71558 1.38905 1.49142 1.42002 1.29053 1.32145 1.19687 1.20522 1.14334 1.20409 0.98656 0.91057 1.27896 0.96979 0.91933 1.07330 1.70965 1.41254 1.33992 1.09448 0.82635 0.74910 0.77071 0.69977 1.19472 1.19626 1.19910 0.94930 0.93295 0.87107 0.95680 0.93222 0.86137 0.88059 0.88375 0.90988 0.91816 0.88478 0.90205 0.91401 0.92226 0.90911 0.93133 0.90345 0.95207 0.86125 0.89534 0.92962 0.78406 0.93182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.41 -11.04 10.70 -148.98 -1.59 -12.64 16 3 C 0.08 2.44 5.23 71.98 0.38 2.81 16 4 C -0.13 -2.93 4.49 29.85 0.13 -2.80 16 5 C 0.50 13.98 7.38 87.66 0.65 14.63 16 6 O -0.51 -18.62 9.48 -3.02 -0.03 -18.64 16 7 N -0.61 -13.11 2.97 -795.03 -2.36 -15.48 16 8 C 0.10 1.35 6.32 86.36 0.55 1.89 16 9 C -0.13 -1.24 6.08 30.67 0.19 -1.05 16 10 C -0.11 -1.18 5.17 30.62 0.16 -1.02 16 11 C -0.09 -1.42 2.34 -10.71 -0.03 -1.44 16 12 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 13 C -0.15 -2.01 8.98 71.98 0.65 -1.37 16 14 C 0.16 3.46 2.54 44.97 0.11 3.58 16 15 H 0.06 1.46 8.12 -2.38 -0.02 1.44 16 16 C 0.08 2.11 4.22 86.30 0.36 2.47 16 17 N -0.64 -23.59 3.55 -517.92 -1.84 -25.42 16 18 C 0.08 3.34 5.78 85.56 0.49 3.83 16 19 C 0.45 23.60 7.82 87.66 0.69 24.29 16 20 O -0.62 -37.10 15.78 -3.07 -0.05 -37.15 16 21 N -0.59 -32.63 5.28 -306.98 -1.62 -34.25 16 22 C -0.41 -24.88 9.68 84.04 0.81 -24.07 16 23 H 0.07 4.62 7.16 -2.91 -0.02 4.60 16 24 C -0.04 -2.49 5.50 84.93 0.47 -2.03 16 25 N -0.92 -53.65 13.68 21.66 0.30 -53.36 16 26 Si 1.13 50.63 29.92 68.60 2.05 52.68 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 28 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 29 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 30 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 1.01 8.14 -2.39 -0.02 1.00 16 32 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.02 0.92 8.10 -2.39 -0.02 0.90 16 34 H 0.05 1.47 8.10 -2.38 -0.02 1.45 16 35 H 0.12 2.06 7.44 -2.39 -0.02 2.04 16 36 H 0.10 2.24 8.13 -2.39 -0.02 2.22 16 37 H 0.10 1.05 5.97 -2.39 -0.01 1.04 16 38 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 41 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 44 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.05 0.80 6.43 -2.39 -0.02 0.79 16 46 H 0.08 2.46 6.30 -2.39 -0.02 2.45 16 47 H 0.03 0.76 6.25 -2.39 -0.01 0.75 16 48 H 0.32 12.27 8.41 -89.70 -0.75 11.52 16 49 H 0.09 3.52 7.88 -2.39 -0.02 3.50 16 50 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 51 H 0.38 19.67 6.73 -92.70 -0.62 19.05 16 52 H 0.26 14.71 6.78 -92.71 -0.63 14.08 16 Total: -1.00 -79.20 404.73 1.40 -77.80 By element: Atomic # 1 Polarization: 45.19 SS G_CDS: -0.31 Total: 44.88 kcal Atomic # 6 Polarization: 14.73 SS G_CDS: 6.86 Total: 21.59 kcal Atomic # 7 Polarization: -122.98 SS G_CDS: -5.53 Total: -128.51 kcal Atomic # 8 Polarization: -66.76 SS G_CDS: -1.67 Total: -68.43 kcal Atomic # 14 Polarization: 50.63 SS G_CDS: 2.05 Total: 52.68 kcal Total: -79.20 1.40 -77.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482478832.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.949 kcal (2) G-P(sol) polarization free energy of solvation -79.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds