Wall clock time and date at job start Wed Apr 1 2020 00:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99569 * 2 1 4 4 C 1.53005 * 109.46957 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.47017 * 179.97438 * 4 3 2 6 6 O 1.21278 * 120.00004 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99869 * 179.97438 * 5 4 3 8 8 C 1.46927 * 120.63086 * 354.04790 * 7 5 4 9 9 C 1.53187 * 108.77928 * 233.58634 * 8 7 5 10 10 C 1.53043 * 109.31355 * 305.36954 * 9 8 7 11 11 C 1.53036 * 109.53629 * 61.36038 * 10 9 8 12 12 H 1.09004 * 109.49432 * 178.64717 * 11 10 9 13 13 C 1.52999 * 109.49925 * 58.59248 * 11 10 9 14 14 C 1.46925 * 120.62955 * 173.77317 * 7 5 4 15 15 H 1.09001 * 109.58493 * 246.20277 * 14 7 5 16 16 C 1.52999 * 109.58682 * 6.62650 * 14 7 5 17 17 N 1.46903 * 109.47305 * 290.68490 * 16 14 7 18 18 C 1.46892 * 111.00136 * 179.97438 * 17 16 14 19 19 C 1.50699 * 109.47092 * 179.97438 * 18 17 16 20 20 O 1.21294 * 120.00197 * 0.02562 * 19 18 17 21 21 N 1.34777 * 120.00141 * 180.02562 * 19 18 17 22 22 C 1.37092 * 120.00250 * 180.02562 * 21 19 18 23 23 H 1.08004 * 120.00036 * 359.97438 * 22 21 19 24 24 C 1.38955 * 120.00426 * 179.97438 * 22 21 19 25 25 N 1.31409 * 119.99957 * 180.02562 * 24 22 21 26 26 Si 1.86802 * 119.99671 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47038 * 89.99573 * 26 24 22 28 28 H 1.48498 * 109.46759 * 209.99599 * 26 24 22 29 29 H 1.48497 * 109.47046 * 329.99813 * 26 24 22 30 30 H 1.09000 * 109.47753 * 300.00319 * 1 2 3 31 31 H 1.08995 * 109.47131 * 60.01160 * 1 2 3 32 32 H 1.09010 * 109.46869 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47484 * 59.99644 * 3 2 1 34 34 H 1.09003 * 109.46970 * 299.99441 * 3 2 1 35 35 H 1.09003 * 109.46857 * 299.99551 * 4 3 2 36 36 H 1.09000 * 109.46800 * 59.99388 * 4 3 2 37 37 H 1.09001 * 109.58607 * 353.38349 * 8 7 5 38 38 H 1.09002 * 109.57855 * 113.79713 * 8 7 5 39 39 H 1.09006 * 109.49256 * 65.32016 * 9 8 7 40 40 H 1.08997 * 109.49771 * 185.38116 * 9 8 7 41 41 H 1.08998 * 109.45842 * 181.38610 * 10 9 8 42 42 H 1.09002 * 109.45732 * 301.34243 * 10 9 8 43 43 H 1.08998 * 109.47523 * 59.99429 * 13 11 10 44 44 H 1.09000 * 109.47804 * 179.97438 * 13 11 10 45 45 H 1.09010 * 109.46637 * 299.99510 * 13 11 10 46 46 H 1.09001 * 109.47132 * 50.68787 * 16 14 7 47 47 H 1.09000 * 109.47124 * 170.68874 * 16 14 7 48 48 H 1.00903 * 110.99451 * 303.95798 * 17 16 14 49 49 H 1.08991 * 109.47546 * 300.00259 * 18 17 16 50 50 H 1.09004 * 109.47364 * 60.00254 * 18 17 16 51 51 H 0.97002 * 120.00247 * 359.97438 * 21 19 18 52 52 H 0.97001 * 119.99633 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1483 2.5615 0.0000 6 8 3.4354 3.5426 -0.0013 7 7 5.4887 2.7024 0.0009 8 6 6.3646 1.5303 0.1337 9 6 7.3361 1.7695 1.2936 10 6 8.0800 3.0876 1.0672 11 6 7.0762 4.2422 1.0318 12 1 7.6089 5.1833 0.8945 13 6 6.2985 4.2833 2.3488 14 6 6.1018 4.0305 -0.1368 15 1 6.6422 4.0873 -1.0817 16 6 5.0128 5.1045 -0.1001 17 7 4.2033 5.0231 -1.3233 18 6 3.1447 6.0415 -1.3228 19 6 2.3376 5.9276 -2.5903 20 8 2.6165 5.0811 -3.4130 21 7 1.3058 6.7665 -2.8099 22 6 0.5712 6.6626 -3.9627 23 1 0.8195 5.9088 -4.6952 24 6 -0.4930 7.5271 -4.1889 25 7 -1.1973 7.4271 -5.2937 26 14 -0.9221 8.8314 -2.9223 27 1 -0.1701 10.0768 -3.2199 28 1 -2.3799 9.1094 -2.9725 29 1 -0.5573 8.3447 -1.5675 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5136 -0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 1.6885 1.8465 0.8899 34 1 1.6885 1.8464 -0.8901 35 1 3.8567 0.6441 0.8909 36 1 3.8574 0.6436 -0.8891 37 1 5.7621 0.6452 0.3381 38 1 6.9259 1.3873 -0.7897 39 1 6.7795 1.8219 2.2294 40 1 8.0533 0.9501 1.3424 41 1 8.7898 3.2481 1.8787 42 1 8.6164 3.0436 0.1193 43 1 6.9926 4.4307 3.1762 44 1 5.5840 5.1061 2.3234 45 1 5.7651 3.3425 2.4851 46 1 4.3747 4.9454 0.7691 47 1 5.4756 6.0893 -0.0357 48 1 4.7822 5.1031 -2.1459 49 1 2.4937 5.8885 -0.4622 50 1 3.5942 7.0329 -1.2666 51 1 1.0824 7.4433 -2.1519 52 1 -1.9399 8.0309 -5.4517 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482478833.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:08 Heat of formation + Delta-G solvation = -78.317719 kcal Electronic energy + Delta-G solvation = -31948.187704 eV Core-core repulsion = 27756.403423 eV Total energy + Delta-G solvation = -4191.784281 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.77974 -38.25721 -38.13202 -37.31322 -35.39361 -33.85450 -33.56835 -32.04687 -31.51714 -31.41012 -28.26709 -26.84988 -26.59813 -25.65620 -24.30181 -23.44583 -23.00257 -21.54547 -20.02677 -19.28213 -18.62883 -18.05133 -17.18315 -16.29218 -16.18546 -15.87609 -15.83701 -15.38325 -15.20800 -15.07643 -14.73015 -14.62848 -14.21932 -14.06169 -13.84486 -13.61634 -13.25179 -13.07142 -13.00076 -12.78830 -12.62549 -12.51755 -12.17774 -12.09081 -11.87229 -11.70724 -11.63583 -11.45217 -11.36492 -11.24200 -11.09445 -11.05559 -11.02050 -10.65109 -10.52646 -10.51158 -9.88970 -9.61001 -9.46395 -8.78220 -8.51027 -8.34403 -8.07358 -7.59021 -6.22328 -3.72647 2.89814 3.02627 3.10125 3.13239 3.20485 3.83267 3.91818 4.17995 4.24805 4.40713 4.49135 4.66473 4.81414 4.85082 4.94639 5.00686 5.10568 5.14872 5.16332 5.27418 5.30069 5.34475 5.37304 5.41690 5.44449 5.45875 5.49829 5.58056 5.61956 5.64639 5.67503 5.69029 5.84281 5.86244 5.87930 5.89142 5.92044 5.97688 6.04529 6.11113 6.18899 6.28341 6.66717 7.16169 7.41533 7.58437 7.70794 7.91653 8.25847 8.57427 8.71872 9.05887 9.53974 9.97641 10.91330 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010457 B = 0.003353 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.948975 B = 8348.238248 C =10186.648153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.400 6.400 3 C 0.076 3.924 4 C -0.135 4.135 5 C 0.510 3.490 6 O -0.469 6.469 7 N -0.610 5.610 8 C 0.109 3.891 9 C -0.137 4.137 10 C -0.113 4.113 11 C -0.102 4.102 12 H 0.078 0.922 13 C -0.145 4.145 14 C 0.159 3.841 15 H 0.068 0.932 16 C 0.069 3.931 17 N -0.636 5.636 18 C 0.061 3.939 19 C 0.457 3.543 20 O -0.565 6.565 21 N -0.597 5.597 22 C -0.300 4.300 23 H 0.118 0.882 24 C 0.039 3.961 25 N -0.886 5.886 26 Si 0.879 3.121 27 H -0.272 1.272 28 H -0.278 1.278 29 H -0.269 1.269 30 H 0.040 0.960 31 H 0.046 0.954 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.050 0.950 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.098 0.902 47 H 0.013 0.987 48 H 0.329 0.671 49 H 0.087 0.913 50 H 0.032 0.968 51 H 0.369 0.631 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.748 -10.831 18.629 27.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.319 6.319 3 C -0.001 4.001 4 C -0.175 4.175 5 C 0.297 3.703 6 O -0.340 6.340 7 N -0.347 5.347 8 C -0.015 4.015 9 C -0.176 4.176 10 C -0.151 4.151 11 C -0.122 4.122 12 H 0.096 0.904 13 C -0.202 4.202 14 C 0.055 3.945 15 H 0.086 0.914 16 C -0.060 4.060 17 N -0.268 5.268 18 C -0.071 4.071 19 C 0.243 3.757 20 O -0.446 6.446 21 N -0.237 5.237 22 C -0.429 4.429 23 H 0.136 0.864 24 C -0.163 4.163 25 N -0.527 5.527 26 Si 0.706 3.294 27 H -0.198 1.198 28 H -0.203 1.203 29 H -0.195 1.195 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.113 0.887 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.116 0.884 47 H 0.031 0.969 48 H 0.148 0.852 49 H 0.105 0.895 50 H 0.050 0.950 51 H 0.202 0.798 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 16.013 -11.448 18.166 26.786 hybrid contribution -0.067 2.056 0.635 2.153 sum 15.946 -9.392 18.801 26.381 Atomic orbital electron populations 1.22711 0.80690 1.02371 1.00480 1.87743 1.20020 1.28478 1.95646 1.22189 0.91884 0.83883 1.02113 1.21485 0.95473 0.96209 1.04332 1.20084 0.81832 0.90736 0.77684 1.90830 1.60248 1.38441 1.44463 1.47762 1.05227 1.06609 1.75082 1.21669 0.92957 0.88513 0.98312 1.21971 0.98582 0.97853 0.99158 1.21522 0.97304 0.94289 1.01948 1.21571 0.96104 0.98870 0.95626 0.90396 1.21854 0.99979 1.02439 0.95952 1.21268 0.93421 0.82715 0.97057 0.91400 1.22214 0.93375 0.93706 0.96683 1.60303 1.13875 1.49872 1.02741 1.21527 0.94918 0.92531 0.98160 1.19838 0.83257 0.84026 0.88545 1.90539 1.70143 1.36602 1.47332 1.42222 1.29457 1.31855 1.20137 1.19423 1.09388 1.17867 0.96248 0.86449 1.25016 0.96421 0.98058 0.96797 1.69627 1.20049 1.38388 1.24647 0.86677 0.78973 0.82383 0.81416 1.19768 1.20287 1.19471 0.94176 0.93567 0.89844 0.92849 0.91565 0.89267 0.88707 0.89765 0.91674 0.91146 0.91016 0.91791 0.91790 0.93066 0.92370 0.92216 0.88372 0.96892 0.85200 0.89451 0.95019 0.79821 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.50 16 2 O -0.40 -5.43 10.70 -35.23 -0.38 -5.81 16 3 C 0.08 1.06 5.23 37.16 0.19 1.25 16 4 C -0.13 -1.57 4.49 -27.88 -0.13 -1.69 16 5 C 0.51 6.79 7.38 -10.99 -0.08 6.71 16 6 O -0.47 -7.81 9.48 5.56 0.05 -7.76 16 7 N -0.61 -6.48 2.40 -164.97 -0.40 -6.88 16 8 C 0.11 0.82 6.32 -3.71 -0.02 0.80 16 9 C -0.14 -0.84 5.74 -26.61 -0.15 -1.00 16 10 C -0.11 -0.74 5.43 -26.69 -0.14 -0.88 16 11 C -0.10 -0.82 2.81 -90.28 -0.25 -1.08 16 12 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 13 C -0.15 -1.21 8.22 37.16 0.31 -0.90 16 14 C 0.16 1.70 2.80 -67.38 -0.19 1.51 16 15 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 16 C 0.07 0.91 3.51 -3.82 -0.01 0.90 16 17 N -0.64 -10.87 3.54 -115.06 -0.41 -11.28 16 18 C 0.06 1.15 5.78 -4.98 -0.03 1.12 16 19 C 0.46 11.15 7.82 -10.99 -0.09 11.06 16 20 O -0.56 -15.98 15.78 5.55 0.09 -15.90 16 21 N -0.60 -15.10 5.09 -10.96 -0.06 -15.16 16 22 C -0.30 -8.87 10.16 -14.93 -0.15 -9.02 16 23 H 0.12 3.94 7.39 -52.48 -0.39 3.56 16 24 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 25 N -0.89 -26.72 13.96 55.50 0.77 -25.95 16 26 Si 0.88 20.23 27.74 -169.99 -4.72 15.52 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 H -0.27 -5.73 6.52 56.52 0.37 -5.37 16 30 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 33 H 0.05 0.73 8.10 -51.93 -0.42 0.31 16 34 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 35 H 0.09 0.83 7.44 -51.93 -0.39 0.45 16 36 H 0.09 1.07 8.13 -51.93 -0.42 0.65 16 37 H 0.08 0.55 5.97 -51.93 -0.31 0.24 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.47 6.34 -51.93 -0.33 0.14 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.54 6.60 -51.93 -0.34 0.20 16 45 H 0.06 0.54 5.97 -51.92 -0.31 0.23 16 46 H 0.10 1.41 5.07 -51.93 -0.26 1.15 16 47 H 0.01 0.16 8.13 -51.93 -0.42 -0.26 16 48 H 0.33 5.86 8.42 -39.29 -0.33 5.53 16 49 H 0.09 1.61 7.88 -51.93 -0.41 1.20 16 50 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.37 8.32 5.76 -40.82 -0.24 8.09 16 52 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 398.74 15.07 6.01 6.01 Total: -1.00 -35.08 398.74 -7.57 -42.65 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -8.81 Total: 13.26 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: 0.27 Total: 11.30 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: -0.08 Total: -59.27 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.24 Total: -29.46 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.72 Total: 15.52 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.08 -7.57 -42.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482478833.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.670 kcal (2) G-P(sol) polarization free energy of solvation -35.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds