Wall clock time and date at job start Wed Apr 1 2020 00:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99569 * 2 1 4 4 C 1.53005 * 109.46957 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.47017 * 179.97438 * 4 3 2 6 6 O 1.21278 * 120.00004 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99869 * 179.97438 * 5 4 3 8 8 C 1.46927 * 120.63086 * 354.04790 * 7 5 4 9 9 C 1.53187 * 108.77928 * 233.58634 * 8 7 5 10 10 C 1.53043 * 109.31355 * 305.36954 * 9 8 7 11 11 C 1.53036 * 109.53629 * 61.36038 * 10 9 8 12 12 H 1.09004 * 109.49432 * 178.64717 * 11 10 9 13 13 C 1.52999 * 109.49925 * 58.59248 * 11 10 9 14 14 C 1.46925 * 120.62955 * 173.77317 * 7 5 4 15 15 H 1.09001 * 109.58493 * 246.20277 * 14 7 5 16 16 C 1.52999 * 109.58682 * 6.62650 * 14 7 5 17 17 N 1.46903 * 109.47305 * 290.68490 * 16 14 7 18 18 C 1.46892 * 111.00136 * 179.97438 * 17 16 14 19 19 C 1.50699 * 109.47092 * 179.97438 * 18 17 16 20 20 O 1.21294 * 120.00197 * 0.02562 * 19 18 17 21 21 N 1.34777 * 120.00141 * 180.02562 * 19 18 17 22 22 C 1.37092 * 120.00250 * 180.02562 * 21 19 18 23 23 H 1.08004 * 120.00036 * 359.97438 * 22 21 19 24 24 C 1.38955 * 120.00426 * 179.97438 * 22 21 19 25 25 N 1.31409 * 119.99957 * 180.02562 * 24 22 21 26 26 Si 1.86802 * 119.99671 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47038 * 89.99573 * 26 24 22 28 28 H 1.48498 * 109.46759 * 209.99599 * 26 24 22 29 29 H 1.48497 * 109.47046 * 329.99813 * 26 24 22 30 30 H 1.09000 * 109.47753 * 300.00319 * 1 2 3 31 31 H 1.08995 * 109.47131 * 60.01160 * 1 2 3 32 32 H 1.09010 * 109.46869 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47484 * 59.99644 * 3 2 1 34 34 H 1.09003 * 109.46970 * 299.99441 * 3 2 1 35 35 H 1.09003 * 109.46857 * 299.99551 * 4 3 2 36 36 H 1.09000 * 109.46800 * 59.99388 * 4 3 2 37 37 H 1.09001 * 109.58607 * 353.38349 * 8 7 5 38 38 H 1.09002 * 109.57855 * 113.79713 * 8 7 5 39 39 H 1.09006 * 109.49256 * 65.32016 * 9 8 7 40 40 H 1.08997 * 109.49771 * 185.38116 * 9 8 7 41 41 H 1.08998 * 109.45842 * 181.38610 * 10 9 8 42 42 H 1.09002 * 109.45732 * 301.34243 * 10 9 8 43 43 H 1.08998 * 109.47523 * 59.99429 * 13 11 10 44 44 H 1.09000 * 109.47804 * 179.97438 * 13 11 10 45 45 H 1.09010 * 109.46637 * 299.99510 * 13 11 10 46 46 H 1.09001 * 109.47132 * 50.68787 * 16 14 7 47 47 H 1.09000 * 109.47124 * 170.68874 * 16 14 7 48 48 H 1.00903 * 110.99451 * 303.95798 * 17 16 14 49 49 H 1.08991 * 109.47546 * 300.00259 * 18 17 16 50 50 H 1.09004 * 109.47364 * 60.00254 * 18 17 16 51 51 H 0.97002 * 120.00247 * 359.97438 * 21 19 18 52 52 H 0.97001 * 119.99633 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1483 2.5615 0.0000 6 8 3.4354 3.5426 -0.0013 7 7 5.4887 2.7024 0.0009 8 6 6.3646 1.5303 0.1337 9 6 7.3361 1.7695 1.2936 10 6 8.0800 3.0876 1.0672 11 6 7.0762 4.2422 1.0318 12 1 7.6089 5.1833 0.8945 13 6 6.2985 4.2833 2.3488 14 6 6.1018 4.0305 -0.1368 15 1 6.6422 4.0873 -1.0817 16 6 5.0128 5.1045 -0.1001 17 7 4.2033 5.0231 -1.3233 18 6 3.1447 6.0415 -1.3228 19 6 2.3376 5.9276 -2.5903 20 8 2.6165 5.0811 -3.4130 21 7 1.3058 6.7665 -2.8099 22 6 0.5712 6.6626 -3.9627 23 1 0.8195 5.9088 -4.6952 24 6 -0.4930 7.5271 -4.1889 25 7 -1.1973 7.4271 -5.2937 26 14 -0.9221 8.8314 -2.9223 27 1 -0.1701 10.0768 -3.2199 28 1 -2.3799 9.1094 -2.9725 29 1 -0.5573 8.3447 -1.5675 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5136 -0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 1.6885 1.8465 0.8899 34 1 1.6885 1.8464 -0.8901 35 1 3.8567 0.6441 0.8909 36 1 3.8574 0.6436 -0.8891 37 1 5.7621 0.6452 0.3381 38 1 6.9259 1.3873 -0.7897 39 1 6.7795 1.8219 2.2294 40 1 8.0533 0.9501 1.3424 41 1 8.7898 3.2481 1.8787 42 1 8.6164 3.0436 0.1193 43 1 6.9926 4.4307 3.1762 44 1 5.5840 5.1061 2.3234 45 1 5.7651 3.3425 2.4851 46 1 4.3747 4.9454 0.7691 47 1 5.4756 6.0893 -0.0357 48 1 4.7822 5.1031 -2.1459 49 1 2.4937 5.8885 -0.4622 50 1 3.5942 7.0329 -1.2666 51 1 1.0824 7.4433 -2.1519 52 1 -1.9399 8.0309 -5.4517 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482478833.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:07 Heat of formation + Delta-G solvation = -104.543644 kcal Electronic energy + Delta-G solvation = -31949.324945 eV Core-core repulsion = 27756.403423 eV Total energy + Delta-G solvation = -4192.921522 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.66717 -40.21757 -39.09902 -38.26636 -36.69965 -35.86819 -34.47389 -33.76071 -32.93591 -32.32572 -29.46335 -27.94855 -27.43410 -26.87215 -25.71797 -24.45053 -24.19431 -22.42993 -21.30049 -20.84165 -20.31556 -19.28091 -18.14883 -17.72794 -17.27496 -17.17090 -16.88936 -16.77256 -16.31955 -16.24474 -15.97404 -15.71334 -15.46328 -15.15577 -15.02840 -14.78275 -14.59478 -14.38516 -14.17306 -14.12577 -13.91103 -13.57298 -13.33658 -13.20194 -13.10865 -12.87646 -12.75968 -12.57430 -12.44430 -12.35160 -12.32747 -12.10539 -12.00716 -11.93627 -11.68429 -11.52919 -11.28415 -11.17919 -10.70118 -10.40743 -10.25752 -9.81499 -9.38026 -8.83890 -8.43197 -6.03356 1.27737 1.32279 1.41403 1.95005 1.96644 2.10759 2.20622 2.78736 2.88691 3.13475 3.49377 3.67408 3.86970 3.94869 4.02445 4.06859 4.17024 4.18638 4.23498 4.29454 4.35506 4.39836 4.46494 4.49613 4.53578 4.57059 4.62101 4.66359 4.73060 4.78769 4.80093 4.82125 4.87708 4.89676 4.96171 5.04846 5.12421 5.23327 5.27944 5.31101 5.35671 5.51770 5.59002 5.83949 5.90549 6.11118 6.18361 6.58457 6.61866 6.69206 6.87021 7.39020 7.59250 7.96513 8.74826 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010457 B = 0.003353 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.948975 B = 8348.238248 C =10186.648153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.407 6.407 3 C 0.083 3.917 4 C -0.127 4.127 5 C 0.503 3.497 6 O -0.511 6.511 7 N -0.605 5.605 8 C 0.102 3.898 9 C -0.131 4.131 10 C -0.111 4.111 11 C -0.095 4.095 12 H 0.086 0.914 13 C -0.141 4.141 14 C 0.158 3.842 15 H 0.064 0.936 16 C 0.076 3.924 17 N -0.648 5.648 18 C 0.079 3.921 19 C 0.454 3.546 20 O -0.612 6.612 21 N -0.595 5.595 22 C -0.328 4.328 23 H 0.054 0.946 24 C -0.014 4.014 25 N -0.935 5.935 26 Si 0.965 3.035 27 H -0.255 1.255 28 H -0.272 1.272 29 H -0.238 1.238 30 H 0.050 0.950 31 H 0.031 0.969 32 H 0.109 0.891 33 H 0.052 0.948 34 H 0.025 0.975 35 H 0.119 0.881 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.044 0.956 45 H 0.051 0.949 46 H 0.089 0.911 47 H 0.026 0.974 48 H 0.321 0.679 49 H 0.095 0.905 50 H 0.063 0.937 51 H 0.387 0.613 52 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.555 -10.276 22.138 30.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.326 6.326 3 C 0.006 3.994 4 C -0.167 4.167 5 C 0.290 3.710 6 O -0.385 6.385 7 N -0.341 5.341 8 C -0.020 4.020 9 C -0.169 4.169 10 C -0.148 4.148 11 C -0.115 4.115 12 H 0.104 0.896 13 C -0.198 4.198 14 C 0.054 3.946 15 H 0.082 0.918 16 C -0.052 4.052 17 N -0.281 5.281 18 C -0.054 4.054 19 C 0.242 3.758 20 O -0.496 6.496 21 N -0.236 5.236 22 C -0.457 4.457 23 H 0.072 0.928 24 C -0.213 4.213 25 N -0.576 5.576 26 Si 0.785 3.215 27 H -0.179 1.179 28 H -0.197 1.197 29 H -0.162 1.162 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.127 0.873 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.137 0.863 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.111 0.889 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.107 0.893 47 H 0.044 0.956 48 H 0.139 0.861 49 H 0.113 0.887 50 H 0.080 0.920 51 H 0.223 0.777 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 17.873 -10.917 21.703 30.160 hybrid contribution -0.608 1.756 -0.554 1.939 sum 17.264 -9.162 21.149 28.797 Atomic orbital electron populations 1.22905 0.79657 1.04034 1.00299 1.87728 1.21250 1.28056 1.95573 1.22042 0.93572 0.83767 1.00034 1.21441 0.93636 0.95786 1.05838 1.20400 0.82606 0.90817 0.77185 1.90801 1.61368 1.39636 1.46719 1.47826 1.04765 1.07700 1.73802 1.21934 0.93061 0.87644 0.99402 1.21941 0.98447 0.98442 0.98086 1.21525 0.97004 0.93591 1.02704 1.21539 0.95688 1.00172 0.94077 0.89569 1.21811 0.99945 1.01473 0.96581 1.21310 0.92984 0.82065 0.98262 0.91807 1.22188 0.93370 0.95349 0.94331 1.60322 1.14196 1.49676 1.03880 1.21362 0.94929 0.94652 0.94421 1.20996 0.82686 0.82405 0.89701 1.90510 1.71245 1.38346 1.49501 1.42053 1.29481 1.32783 1.19324 1.19003 1.11576 1.17845 0.97245 0.92822 1.26086 0.95167 1.00511 0.99515 1.69803 1.20671 1.39826 1.27264 0.85367 0.78909 0.78359 0.78904 1.17889 1.19665 1.16153 0.93118 0.95017 0.87292 0.92934 0.95655 0.86290 0.88398 0.88603 0.91216 0.91326 0.88921 0.90335 0.91539 0.91547 0.93693 0.92998 0.89313 0.95572 0.86122 0.88692 0.91968 0.77739 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.41 -11.04 10.70 -148.98 -1.59 -12.64 16 3 C 0.08 2.37 5.23 71.98 0.38 2.75 16 4 C -0.13 -2.90 4.49 29.85 0.13 -2.76 16 5 C 0.50 13.29 7.38 87.66 0.65 13.94 16 6 O -0.51 -17.31 9.48 -3.02 -0.03 -17.34 16 7 N -0.61 -12.15 2.40 -794.23 -1.91 -14.06 16 8 C 0.10 1.30 6.32 86.36 0.55 1.85 16 9 C -0.13 -1.18 5.74 30.67 0.18 -1.00 16 10 C -0.11 -1.08 5.43 30.62 0.17 -0.91 16 11 C -0.10 -1.30 2.81 -10.57 -0.03 -1.33 16 12 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 13 C -0.14 -2.02 8.22 71.98 0.59 -1.43 16 14 C 0.16 3.15 2.80 45.12 0.13 3.27 16 15 H 0.06 1.35 8.12 -2.39 -0.02 1.33 16 16 C 0.08 1.93 3.51 86.30 0.30 2.23 16 17 N -0.65 -22.29 3.54 -517.95 -1.84 -24.13 16 18 C 0.08 2.92 5.78 85.56 0.49 3.41 16 19 C 0.45 22.76 7.82 87.66 0.69 23.45 16 20 O -0.61 -36.64 15.78 -3.07 -0.05 -36.69 16 21 N -0.59 -30.57 5.09 -306.98 -1.56 -32.13 16 22 C -0.33 -20.28 10.16 84.04 0.85 -19.43 16 23 H 0.05 3.92 7.39 -2.91 -0.02 3.90 16 24 C -0.01 -0.83 5.50 84.93 0.47 -0.37 16 25 N -0.93 -58.24 13.96 21.66 0.30 -57.94 16 26 Si 0.96 41.04 27.74 68.60 1.90 42.94 16 27 H -0.25 -10.16 7.11 99.48 0.71 -9.46 16 28 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 29 H -0.24 -8.86 6.52 99.48 0.65 -8.21 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.11 1.86 8.14 -2.38 -0.02 1.85 16 33 H 0.05 1.48 8.10 -2.39 -0.02 1.46 16 34 H 0.03 0.92 8.10 -2.39 -0.02 0.90 16 35 H 0.12 1.98 7.44 -2.39 -0.02 1.96 16 36 H 0.10 2.17 8.13 -2.39 -0.02 2.15 16 37 H 0.10 1.00 5.97 -2.39 -0.01 0.99 16 38 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.07 0.69 6.34 -2.38 -0.02 0.67 16 40 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.04 0.76 6.60 -2.39 -0.02 0.75 16 45 H 0.05 0.83 5.97 -2.38 -0.01 0.82 16 46 H 0.09 2.49 5.07 -2.39 -0.01 2.47 16 47 H 0.03 0.60 8.13 -2.39 -0.02 0.58 16 48 H 0.32 11.65 8.42 -89.69 -0.75 10.90 16 49 H 0.10 3.41 7.88 -2.39 -0.02 3.39 16 50 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 51 H 0.39 16.87 5.76 -92.71 -0.53 16.33 16 52 H 0.28 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -82.78 398.74 1.60 -81.18 By element: Atomic # 1 Polarization: 45.68 SS G_CDS: -0.42 Total: 45.26 kcal Atomic # 6 Polarization: 18.74 SS G_CDS: 6.79 Total: 25.53 kcal Atomic # 7 Polarization: -123.26 SS G_CDS: -5.00 Total: -128.26 kcal Atomic # 8 Polarization: -64.99 SS G_CDS: -1.67 Total: -66.66 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 1.90 Total: 42.94 kcal Total: -82.78 1.60 -81.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482478833.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.360 kcal (2) G-P(sol) polarization free energy of solvation -82.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds