Wall clock time and date at job start Wed Apr 1 2020 00:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.53002 * 109.47628 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.46806 * 300.00074 * 5 4 2 7 7 H 1.08992 * 109.47399 * 299.99952 * 6 5 4 8 8 C 1.50698 * 109.47170 * 179.97438 * 6 5 4 9 9 O 1.21279 * 120.00539 * 240.00903 * 8 6 5 10 10 N 1.34783 * 119.99893 * 59.99748 * 8 6 5 11 11 C 1.46496 * 120.00229 * 179.97438 * 10 8 6 12 12 C 1.52993 * 109.47251 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.47115 * 304.99913 * 12 11 10 14 14 O 1.42893 * 109.47404 * 65.00059 * 12 11 10 15 15 C 1.53000 * 109.47399 * 185.00576 * 12 11 10 16 16 N 1.46896 * 109.47497 * 180.02562 * 15 12 11 17 17 C 1.46900 * 111.00068 * 179.97438 * 16 15 12 18 18 C 1.50697 * 109.47121 * 179.97438 * 17 16 15 19 19 O 1.21297 * 120.00035 * 359.97438 * 18 17 16 20 20 N 1.34781 * 120.00146 * 179.97438 * 18 17 16 21 21 C 1.37092 * 120.00038 * 179.97438 * 20 18 17 22 22 H 1.08005 * 119.99956 * 359.97438 * 21 20 18 23 23 C 1.38952 * 120.00345 * 180.02562 * 21 20 18 24 24 N 1.31415 * 119.99416 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00281 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47245 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47143 * 120.00018 * 25 23 21 28 28 H 1.48502 * 109.46675 * 239.99581 * 25 23 21 29 29 C 1.53002 * 109.46911 * 59.99917 * 6 5 4 30 30 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 34 34 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 35 35 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 36 36 H 1.09001 * 109.47142 * 180.02562 * 5 4 2 37 37 H 1.09002 * 109.46838 * 59.99718 * 5 4 2 38 38 H 0.96999 * 119.99370 * 0.02562 * 10 8 6 39 39 H 1.09004 * 109.47223 * 300.00520 * 11 10 8 40 40 H 1.09002 * 109.46763 * 60.00102 * 11 10 8 41 41 H 0.96694 * 114.00157 * 60.00019 * 14 12 11 42 42 H 1.09009 * 109.46722 * 299.99718 * 15 12 11 43 43 H 1.09000 * 109.47107 * 59.99078 * 15 12 11 44 44 H 1.00896 * 111.00044 * 56.03942 * 16 15 12 45 45 H 1.09005 * 109.46899 * 299.99617 * 17 16 15 46 46 H 1.08991 * 109.47749 * 59.99433 * 17 16 15 47 47 H 0.96994 * 120.00007 * 359.97438 * 20 18 17 48 48 H 0.96998 * 119.99906 * 180.02562 * 24 23 21 49 49 H 1.09004 * 109.46930 * 179.97438 * 29 6 5 50 50 H 1.09002 * 109.47067 * 59.99825 * 29 6 5 51 51 H 1.09002 * 109.47103 * 300.00247 * 30 2 1 52 52 H 1.09001 * 109.47066 * 60.00169 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7206 1.2497 6 6 4.0805 -1.4416 0.0004 7 1 3.7176 -2.4693 0.0002 8 6 5.5875 -1.4406 0.0004 9 8 6.1936 -0.9150 -0.9091 10 7 6.2618 -2.0237 1.0114 11 6 7.7268 -2.0232 1.0112 12 6 8.2372 -2.7444 2.2602 13 1 7.8026 -2.2852 3.1480 14 8 7.8596 -4.1214 2.2029 15 6 9.7620 -2.6359 2.3245 16 7 10.2521 -3.3289 3.5234 17 6 11.7157 -3.2458 3.6181 18 6 12.1805 -3.9657 4.8577 19 8 11.3721 -4.4954 5.5906 20 7 13.4946 -4.0209 5.1522 21 6 13.9174 -4.6753 6.2802 22 1 13.1974 -5.1463 6.9331 23 6 15.2721 -4.7318 6.5841 24 7 16.1481 -4.1583 5.7899 25 14 15.8483 -5.6241 8.1207 26 1 14.6741 -6.1805 8.8396 27 1 16.7638 -6.7288 7.7377 28 1 16.5650 -4.6719 9.0066 29 6 3.5705 -0.7204 -1.2488 30 6 2.0400 -0.7212 -1.2491 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 1.6766 -0.2074 2.1393 35 1 1.6767 -1.7488 1.2493 36 1 3.9333 -1.2348 2.1395 37 1 3.9330 0.3072 1.2498 38 1 5.7770 -2.4443 1.7387 39 1 8.0901 -2.5372 0.1212 40 1 8.0897 -0.9954 1.0108 41 1 8.2118 -4.5943 1.4365 42 1 10.1967 -3.0952 1.4366 43 1 10.0499 -1.5856 2.3681 44 1 9.9431 -4.2893 3.5377 45 1 12.1636 -3.7092 2.7389 46 1 12.0177 -2.1999 3.6710 47 1 14.1412 -3.5976 4.5660 48 1 17.0938 -4.1981 6.0018 49 1 3.9346 -1.2337 -2.1388 50 1 3.9335 0.3074 -1.2486 51 1 1.6767 -1.7489 -1.2491 52 1 1.6768 -0.2074 -2.1391 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482786873.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:00 Heat of formation + Delta-G solvation = -159.107374 kcal Electronic energy + Delta-G solvation = -28968.211139 eV Core-core repulsion = 24772.923556 eV Total energy + Delta-G solvation = -4195.287583 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.59934 -38.85626 -38.29766 -37.77683 -34.97132 -34.52764 -33.78824 -33.21276 -31.26591 -31.20731 -30.33501 -27.83398 -26.74396 -24.88728 -23.40655 -23.09426 -22.30605 -21.93297 -20.51370 -20.05990 -19.26684 -17.91258 -17.74293 -17.03354 -16.56859 -16.11230 -15.71100 -15.62878 -15.32340 -14.77579 -14.71824 -14.63500 -14.54438 -14.40661 -14.09559 -13.82710 -13.65428 -13.42708 -13.11490 -12.93323 -12.80264 -12.66225 -12.61311 -12.35794 -11.93877 -11.82701 -11.59769 -11.55520 -11.52277 -11.39616 -11.19332 -11.10755 -11.04530 -10.78984 -10.49053 -10.40985 -10.34408 -10.22611 -9.90290 -9.52458 -9.37780 -8.47704 -8.10117 -7.96559 -6.42288 -3.83043 2.36482 2.81894 3.16158 3.26808 3.34252 3.89393 3.95055 4.14843 4.16114 4.19351 4.24005 4.26321 4.59519 4.62168 4.68529 4.78522 4.80791 4.89676 4.92477 4.99955 5.04230 5.09441 5.11432 5.20821 5.22921 5.28802 5.34686 5.36861 5.41737 5.47902 5.55995 5.59270 5.65141 5.73442 5.74445 5.79102 5.81003 5.88171 5.90276 5.94598 6.03711 6.11563 6.24618 7.12842 7.19649 7.37832 7.55122 7.65589 7.94458 8.06057 8.60741 9.17588 9.53702 10.05158 10.75559 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.034497 B = 0.001387 C = 0.001356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.478305 B =20176.960164 C =20647.106326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 H 0.070 0.930 4 C -0.113 4.113 5 C -0.111 4.111 6 C -0.105 4.105 7 H 0.097 0.903 8 C 0.515 3.485 9 O -0.543 6.543 10 N -0.723 5.723 11 C 0.088 3.912 12 C 0.099 3.901 13 H 0.115 0.885 14 O -0.553 6.553 15 C 0.031 3.969 16 N -0.663 5.663 17 C 0.050 3.950 18 C 0.440 3.560 19 O -0.582 6.582 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 C -0.099 4.099 30 C -0.114 4.114 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.405 0.595 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.373 0.627 42 H 0.032 0.968 43 H 0.083 0.917 44 H 0.356 0.644 45 H 0.043 0.957 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.069 0.931 50 H 0.069 0.931 51 H 0.063 0.937 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.791 7.855 -15.463 31.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 H 0.089 0.911 4 C -0.150 4.150 5 C -0.149 4.149 6 C -0.127 4.127 7 H 0.115 0.885 8 C 0.302 3.698 9 O -0.420 6.420 10 N -0.375 5.375 11 C -0.037 4.037 12 C 0.039 3.961 13 H 0.133 0.867 14 O -0.358 6.358 15 C -0.100 4.100 16 N -0.297 5.297 17 C -0.083 4.083 18 C 0.226 3.774 19 O -0.466 6.466 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.122 0.878 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 C -0.137 4.137 30 C -0.152 4.152 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.241 0.759 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.220 0.780 42 H 0.050 0.950 43 H 0.101 0.899 44 H 0.177 0.823 45 H 0.061 0.939 46 H 0.104 0.896 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.087 0.913 50 H 0.088 0.912 51 H 0.081 0.919 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -27.086 8.566 -14.628 31.953 hybrid contribution 1.354 -1.022 -0.513 1.773 sum -25.732 7.544 -15.141 30.794 Atomic orbital electron populations 1.21833 0.95203 1.01821 1.01671 1.21180 0.95454 0.99830 0.94931 0.91125 1.21591 0.94513 1.01068 0.97845 1.21543 0.96326 1.01088 0.95958 1.21359 0.91071 1.02179 0.98041 0.88499 1.20740 0.90133 0.77490 0.81461 1.90704 1.70486 1.44880 1.35897 1.45928 1.07020 1.58801 1.25778 1.22054 0.80571 1.02107 0.98950 1.22222 0.94148 0.82282 0.97444 0.86682 1.86650 1.76691 1.21861 1.50602 1.22535 0.94298 1.00939 0.92249 1.59976 1.09694 1.22595 1.37435 1.21687 0.88229 1.01324 0.97010 1.19791 0.83362 0.85959 0.88323 1.90535 1.53323 1.50463 1.52231 1.41865 1.05378 1.48971 1.23849 1.19765 0.91997 1.30154 1.00951 0.87843 1.25263 0.95615 0.97820 0.99244 1.69622 1.02485 1.44361 1.37872 0.85797 0.78764 0.78834 0.80938 1.19191 1.20773 1.20744 1.21351 0.94836 1.01299 0.96204 1.21632 0.95076 1.00795 0.97682 0.92681 0.92723 0.92701 0.91502 0.91623 0.91268 0.91292 0.75945 0.91179 0.90361 0.77957 0.95014 0.89913 0.82319 0.93906 0.89609 0.77476 0.91928 0.91256 0.91195 0.91863 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.19 37.16 0.34 -0.32 16 2 C -0.10 -0.49 2.72 -90.63 -0.25 -0.73 16 3 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 4 C -0.11 -0.55 5.20 -26.73 -0.14 -0.69 16 5 C -0.11 -0.63 5.10 -26.73 -0.14 -0.76 16 6 C -0.11 -0.71 2.53 -91.77 -0.23 -0.94 16 7 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 8 C 0.52 4.94 7.15 -10.98 -0.08 4.86 16 9 O -0.54 -7.34 15.98 5.56 0.09 -7.25 16 10 N -0.72 -5.82 5.40 -60.30 -0.33 -6.15 16 11 C 0.09 0.75 5.31 -4.05 -0.02 0.73 16 12 C 0.10 0.92 3.27 -26.73 -0.09 0.83 16 13 H 0.12 1.17 8.14 -51.93 -0.42 0.74 16 14 O -0.55 -5.42 12.62 -35.23 -0.44 -5.87 16 15 C 0.03 0.33 5.39 -3.83 -0.02 0.31 16 16 N -0.66 -10.40 6.13 -115.06 -0.70 -11.11 16 17 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 18 C 0.44 10.42 7.82 -10.99 -0.09 10.33 16 19 O -0.58 -15.92 15.78 5.54 0.09 -15.83 16 20 N -0.56 -14.31 5.29 -10.96 -0.06 -14.37 16 21 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 22 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.55 13.05 55.50 0.72 -23.82 16 25 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 C -0.10 -0.71 4.49 -26.71 -0.12 -0.83 16 30 C -0.11 -0.62 5.21 -26.71 -0.14 -0.76 16 31 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.34 7.56 -51.93 -0.39 -0.05 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.41 2.67 7.89 -40.82 -0.32 2.35 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.37 2.59 9.04 45.56 0.41 3.01 16 42 H 0.03 0.31 8.14 -51.92 -0.42 -0.11 16 43 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.36 5.95 7.82 -39.29 -0.31 5.65 16 45 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 47 H 0.39 9.49 7.90 -40.82 -0.32 9.16 16 48 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 49 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 50 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 51 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 52 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 420.15 15.07 6.33 6.33 Total: -1.00 -33.96 420.15 -9.03 -42.99 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: -8.47 Total: 14.18 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -1.24 Total: 4.86 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: -0.36 Total: -55.45 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.27 Total: -28.95 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -33.96 -9.03 -42.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482786873.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.113 kcal (2) G-P(sol) polarization free energy of solvation -33.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds