Wall clock time and date at job start Wed Apr 1 2020 00:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.53002 * 109.47628 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.46806 * 300.00074 * 5 4 2 7 7 H 1.08992 * 109.47399 * 299.99952 * 6 5 4 8 8 C 1.50698 * 109.47170 * 179.97438 * 6 5 4 9 9 O 1.21279 * 120.00539 * 240.00903 * 8 6 5 10 10 N 1.34783 * 119.99893 * 59.99748 * 8 6 5 11 11 C 1.46496 * 120.00229 * 179.97438 * 10 8 6 12 12 C 1.52993 * 109.47251 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.47115 * 304.99913 * 12 11 10 14 14 O 1.42893 * 109.47404 * 65.00059 * 12 11 10 15 15 C 1.53000 * 109.47399 * 185.00576 * 12 11 10 16 16 N 1.46896 * 109.47497 * 180.02562 * 15 12 11 17 17 C 1.46900 * 111.00068 * 179.97438 * 16 15 12 18 18 C 1.50697 * 109.47121 * 179.97438 * 17 16 15 19 19 O 1.21297 * 120.00035 * 359.97438 * 18 17 16 20 20 N 1.34781 * 120.00146 * 179.97438 * 18 17 16 21 21 C 1.37092 * 120.00038 * 179.97438 * 20 18 17 22 22 H 1.08005 * 119.99956 * 359.97438 * 21 20 18 23 23 C 1.38952 * 120.00345 * 180.02562 * 21 20 18 24 24 N 1.31415 * 119.99416 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00281 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47245 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47143 * 120.00018 * 25 23 21 28 28 H 1.48502 * 109.46675 * 239.99581 * 25 23 21 29 29 C 1.53002 * 109.46911 * 59.99917 * 6 5 4 30 30 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 34 34 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 35 35 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 36 36 H 1.09001 * 109.47142 * 180.02562 * 5 4 2 37 37 H 1.09002 * 109.46838 * 59.99718 * 5 4 2 38 38 H 0.96999 * 119.99370 * 0.02562 * 10 8 6 39 39 H 1.09004 * 109.47223 * 300.00520 * 11 10 8 40 40 H 1.09002 * 109.46763 * 60.00102 * 11 10 8 41 41 H 0.96694 * 114.00157 * 60.00019 * 14 12 11 42 42 H 1.09009 * 109.46722 * 299.99718 * 15 12 11 43 43 H 1.09000 * 109.47107 * 59.99078 * 15 12 11 44 44 H 1.00896 * 111.00044 * 56.03942 * 16 15 12 45 45 H 1.09005 * 109.46899 * 299.99617 * 17 16 15 46 46 H 1.08991 * 109.47749 * 59.99433 * 17 16 15 47 47 H 0.96994 * 120.00007 * 359.97438 * 20 18 17 48 48 H 0.96998 * 119.99906 * 180.02562 * 24 23 21 49 49 H 1.09004 * 109.46930 * 179.97438 * 29 6 5 50 50 H 1.09002 * 109.47067 * 59.99825 * 29 6 5 51 51 H 1.09002 * 109.47103 * 300.00247 * 30 2 1 52 52 H 1.09001 * 109.47066 * 60.00169 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7206 1.2497 6 6 4.0805 -1.4416 0.0004 7 1 3.7176 -2.4693 0.0002 8 6 5.5875 -1.4406 0.0004 9 8 6.1936 -0.9150 -0.9091 10 7 6.2618 -2.0237 1.0114 11 6 7.7268 -2.0232 1.0112 12 6 8.2372 -2.7444 2.2602 13 1 7.8026 -2.2852 3.1480 14 8 7.8596 -4.1214 2.2029 15 6 9.7620 -2.6359 2.3245 16 7 10.2521 -3.3289 3.5234 17 6 11.7157 -3.2458 3.6181 18 6 12.1805 -3.9657 4.8577 19 8 11.3721 -4.4954 5.5906 20 7 13.4946 -4.0209 5.1522 21 6 13.9174 -4.6753 6.2802 22 1 13.1974 -5.1463 6.9331 23 6 15.2721 -4.7318 6.5841 24 7 16.1481 -4.1583 5.7899 25 14 15.8483 -5.6241 8.1207 26 1 14.6741 -6.1805 8.8396 27 1 16.7638 -6.7288 7.7377 28 1 16.5650 -4.6719 9.0066 29 6 3.5705 -0.7204 -1.2488 30 6 2.0400 -0.7212 -1.2491 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 1.6766 -0.2074 2.1393 35 1 1.6767 -1.7488 1.2493 36 1 3.9333 -1.2348 2.1395 37 1 3.9330 0.3072 1.2498 38 1 5.7770 -2.4443 1.7387 39 1 8.0901 -2.5372 0.1212 40 1 8.0897 -0.9954 1.0108 41 1 8.2118 -4.5943 1.4365 42 1 10.1967 -3.0952 1.4366 43 1 10.0499 -1.5856 2.3681 44 1 9.9431 -4.2893 3.5377 45 1 12.1636 -3.7092 2.7389 46 1 12.0177 -2.1999 3.6710 47 1 14.1412 -3.5976 4.5660 48 1 17.0938 -4.1981 6.0018 49 1 3.9346 -1.2337 -2.1388 50 1 3.9335 0.3074 -1.2486 51 1 1.6767 -1.7489 -1.2491 52 1 1.6768 -0.2074 -2.1391 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482786873.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:59 Heat of formation + Delta-G solvation = -186.690522 kcal Electronic energy + Delta-G solvation = -28969.407234 eV Core-core repulsion = 24772.923556 eV Total energy + Delta-G solvation = -4196.483678 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.29400 -40.20767 -39.35416 -38.64264 -36.31113 -35.66927 -35.30525 -33.71776 -33.26897 -31.74199 -31.23058 -28.84134 -27.66867 -26.40070 -24.61858 -23.55601 -22.94925 -22.73889 -21.17498 -21.02185 -20.59222 -19.91668 -18.47292 -18.13643 -17.44960 -17.24869 -16.91170 -16.46502 -16.40476 -16.20962 -15.96740 -15.45790 -15.26191 -15.15142 -15.07741 -15.04695 -14.67778 -14.35428 -14.20928 -13.94926 -13.63292 -13.47911 -13.34437 -13.17247 -13.09921 -13.06465 -12.93220 -12.70737 -12.40786 -12.36620 -12.11386 -12.01109 -11.99025 -11.89621 -11.59127 -11.51740 -11.27017 -11.21102 -10.91638 -10.65918 -10.33188 -10.12606 -10.01806 -9.33466 -8.47220 -5.95944 1.36644 1.42153 1.56394 1.61726 2.04682 2.10747 2.29890 2.89959 3.20214 3.42574 3.49644 3.61356 3.70885 3.76765 3.88384 3.98872 4.09684 4.14891 4.17342 4.27276 4.31617 4.43347 4.44875 4.50051 4.51513 4.55770 4.58286 4.63873 4.69406 4.75236 4.84160 4.94260 5.00313 5.05467 5.08516 5.14209 5.20078 5.26398 5.32558 5.38968 5.41005 5.43044 5.46291 5.61716 5.86192 6.08296 6.39761 6.51972 6.59755 6.77002 7.12455 7.22852 7.55804 8.11262 8.70395 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.034497 B = 0.001387 C = 0.001356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.478305 B =20176.960164 C =20647.106326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 H 0.062 0.938 4 C -0.110 4.110 5 C -0.108 4.108 6 C -0.099 4.099 7 H 0.115 0.885 8 C 0.512 3.488 9 O -0.587 6.587 10 N -0.713 5.713 11 C 0.095 3.905 12 C 0.114 3.886 13 H 0.108 0.892 14 O -0.565 6.565 15 C 0.031 3.969 16 N -0.679 5.679 17 C 0.065 3.935 18 C 0.436 3.564 19 O -0.623 6.623 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.078 0.922 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.271 1.271 29 C -0.097 4.097 30 C -0.109 4.109 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.414 0.586 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.386 0.614 42 H 0.050 0.950 43 H 0.092 0.908 44 H 0.349 0.651 45 H 0.067 0.933 46 H 0.105 0.895 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.056 0.944 50 H 0.051 0.949 51 H 0.072 0.928 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.484 7.671 -15.610 32.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 H 0.080 0.920 4 C -0.147 4.147 5 C -0.146 4.146 6 C -0.120 4.120 7 H 0.133 0.867 8 C 0.300 3.700 9 O -0.467 6.467 10 N -0.365 5.365 11 C -0.030 4.030 12 C 0.054 3.946 13 H 0.125 0.875 14 O -0.372 6.372 15 C -0.099 4.099 16 N -0.313 5.313 17 C -0.068 4.068 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.210 5.210 21 C -0.464 4.464 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.198 1.198 27 H -0.196 1.196 28 H -0.196 1.196 29 C -0.135 4.135 30 C -0.146 4.146 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.251 0.749 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.235 0.765 42 H 0.068 0.932 43 H 0.110 0.890 44 H 0.168 0.832 45 H 0.085 0.915 46 H 0.123 0.877 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.075 0.925 50 H 0.070 0.930 51 H 0.090 0.910 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -27.779 8.388 -14.788 32.569 hybrid contribution 1.544 -0.954 -0.508 1.885 sum -26.235 7.434 -15.296 31.265 Atomic orbital electron populations 1.21809 0.94482 1.02163 1.01851 1.21173 0.96014 0.99346 0.94874 0.91988 1.21582 0.93652 1.01622 0.97856 1.21531 0.97027 1.00337 0.95656 1.21371 0.89016 1.03262 0.98356 0.86723 1.21238 0.91247 0.76619 0.80864 1.90684 1.71513 1.46892 1.37611 1.45873 1.06932 1.58110 1.25623 1.21931 0.80824 1.01733 0.98484 1.21993 0.92989 0.82249 0.97346 0.87453 1.86626 1.76886 1.22089 1.51625 1.22633 0.95257 1.00962 0.91019 1.59954 1.08482 1.22432 1.40382 1.21545 0.89569 1.01433 0.94230 1.20916 0.82346 0.84858 0.89525 1.90500 1.54215 1.52075 1.54183 1.41933 1.06299 1.49260 1.23530 1.19715 0.92371 1.32042 1.02293 0.90355 1.26031 0.95140 0.98056 1.01938 1.69677 1.02928 1.44554 1.38970 0.84872 0.78049 0.78027 0.77400 1.19791 1.19554 1.19627 1.21307 0.96143 1.00070 0.95995 1.21596 0.93551 1.01433 0.98057 0.92225 0.92680 0.92449 0.90965 0.90723 0.90193 0.92474 0.74859 0.91127 0.90743 0.76468 0.93189 0.89011 0.83197 0.91481 0.87743 0.76957 0.91297 0.92545 0.92999 0.90960 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.19 71.98 0.66 -0.41 16 2 C -0.10 -0.86 2.72 -10.80 -0.03 -0.89 16 3 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 4 C -0.11 -0.87 5.20 30.59 0.16 -0.71 16 5 C -0.11 -1.07 5.10 30.60 0.16 -0.92 16 6 C -0.10 -1.24 2.53 -11.54 -0.03 -1.27 16 7 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 8 C 0.51 9.54 7.15 87.66 0.63 10.17 16 9 O -0.59 -16.02 15.98 -3.03 -0.05 -16.07 16 10 N -0.71 -10.61 5.40 -463.07 -2.50 -13.11 16 11 C 0.10 1.50 5.31 86.38 0.46 1.96 16 12 C 0.11 1.93 3.27 30.59 0.10 2.03 16 13 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 14 O -0.57 -10.14 12.62 -148.98 -1.88 -12.02 16 15 C 0.03 0.61 5.39 86.30 0.47 1.08 16 16 N -0.68 -20.37 6.13 -517.94 -3.17 -23.54 16 17 C 0.06 2.15 6.17 85.56 0.53 2.67 16 18 C 0.44 20.71 7.82 87.66 0.69 21.40 16 19 O -0.62 -34.78 15.78 -3.08 -0.05 -34.83 16 20 N -0.57 -29.38 5.29 -306.98 -1.62 -31.00 16 21 C -0.33 -19.08 9.68 84.04 0.81 -18.26 16 22 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 23 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 24 N -0.92 -49.56 13.05 21.66 0.28 -49.28 16 25 Si 0.99 42.92 29.55 68.60 2.03 44.94 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 28 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 29 C -0.10 -1.39 4.49 30.61 0.14 -1.25 16 30 C -0.11 -1.08 5.21 30.61 0.16 -0.92 16 31 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 34 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.08 0.63 7.56 -2.39 -0.02 0.61 16 37 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.41 4.74 7.89 -92.71 -0.73 4.00 16 39 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.39 4.64 9.04 -74.06 -0.67 3.97 16 42 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 43 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.35 11.36 7.82 -89.70 -0.70 10.65 16 45 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 46 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 47 H 0.40 19.23 7.90 -92.71 -0.73 18.50 16 48 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 49 H 0.06 0.94 8.10 -2.38 -0.02 0.92 16 50 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 51 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 52 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -74.06 420.15 -3.49 -77.55 By element: Atomic # 1 Polarization: 44.74 SS G_CDS: -1.89 Total: 42.85 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: 5.36 Total: 14.51 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -7.01 Total: -116.93 kcal Atomic # 8 Polarization: -60.95 SS G_CDS: -1.98 Total: -62.92 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Total: -74.06 -3.49 -77.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482786873.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.142 kcal (2) G-P(sol) polarization free energy of solvation -74.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds