Wall clock time and date at job start Wed Apr 1 2020 00:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 113.99684 * 2 1 4 4 C 1.53002 * 109.46673 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46825 * 180.02562 * 4 3 2 6 6 C 1.50705 * 109.47123 * 179.97438 * 5 4 3 7 7 O 1.21287 * 119.99883 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00181 * 179.97438 * 6 5 4 9 9 C 1.46931 * 120.62974 * 354.21034 * 8 6 5 10 10 C 1.53193 * 108.77350 * 126.36808 * 9 8 6 11 11 C 1.53043 * 109.31138 * 54.63842 * 10 9 8 12 12 H 1.09000 * 109.46088 * 58.63764 * 11 10 9 13 13 N 1.46902 * 109.45574 * 178.61217 * 11 10 9 14 14 C 1.46903 * 110.99926 * 274.99665 * 13 11 10 15 15 C 1.50692 * 109.47037 * 180.02562 * 14 13 11 16 16 O 1.21290 * 120.00163 * 359.97438 * 15 14 13 17 17 N 1.34778 * 120.00265 * 180.02562 * 15 14 13 18 18 C 1.37089 * 120.00491 * 179.97438 * 17 15 14 19 19 H 1.08001 * 120.00034 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00645 * 179.97438 * 18 17 15 21 21 N 1.31409 * 120.00438 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99460 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47348 * 269.99639 * 22 20 18 24 24 H 1.48499 * 109.47357 * 30.00006 * 22 20 18 25 25 H 1.48502 * 109.47194 * 149.99654 * 22 20 18 26 26 C 1.53039 * 109.53576 * 298.62817 * 11 10 9 27 27 C 1.46920 * 120.63326 * 174.18704 * 8 6 5 28 28 H 1.08999 * 109.58476 * 113.70046 * 27 8 6 29 29 C 1.53002 * 109.58556 * 353.41728 * 27 8 6 30 30 H 1.09005 * 109.46744 * 299.99741 * 1 2 3 31 31 H 1.08999 * 109.47527 * 60.00153 * 1 2 3 32 32 H 1.09003 * 109.46645 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47192 * 60.00552 * 3 2 1 34 34 H 1.08997 * 109.47072 * 300.00012 * 3 2 1 35 35 H 1.08995 * 109.47384 * 59.99581 * 4 3 2 36 36 H 1.09007 * 109.46965 * 299.99792 * 4 3 2 37 37 H 1.08995 * 109.47630 * 59.99550 * 5 4 3 38 38 H 1.08997 * 109.46847 * 299.99504 * 5 4 3 39 39 H 1.09001 * 109.58127 * 6.58425 * 9 8 6 40 40 H 1.08994 * 109.70161 * 246.22911 * 9 8 6 41 41 H 1.08997 * 109.50226 * 294.68355 * 10 9 8 42 42 H 1.09007 * 109.51938 * 174.60271 * 10 9 8 43 43 H 1.00898 * 110.99392 * 151.04684 * 13 11 10 44 44 H 1.08994 * 109.46863 * 60.00048 * 14 13 11 45 45 H 1.09002 * 109.46830 * 300.00669 * 14 13 11 46 46 H 0.97004 * 119.99272 * 359.97438 * 17 15 14 47 47 H 0.97001 * 119.99824 * 179.97438 * 21 20 18 48 48 H 1.08999 * 109.49558 * 181.31350 * 26 11 10 49 49 H 1.08993 * 109.49990 * 301.41761 * 26 11 10 50 50 H 1.09008 * 109.46874 * 65.78715 * 29 27 8 51 51 H 1.08996 * 109.47172 * 185.77929 * 29 27 8 52 52 H 1.08998 * 109.47406 * 305.78667 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5824 0.0000 6 6 5.6600 2.4635 0.0000 7 8 6.1817 1.3685 0.0000 8 7 6.4240 3.5738 0.0000 9 6 5.8120 4.9035 -0.1275 10 6 6.2883 5.7791 1.0358 11 6 7.8183 5.7916 1.0665 12 1 8.1974 6.1725 0.1181 13 7 8.2787 6.6570 2.1606 14 6 8.3385 8.0609 1.7319 15 6 8.8143 8.9161 2.8778 16 8 9.0773 8.4065 3.9465 17 7 8.9467 10.2475 2.7154 18 6 9.3790 11.0257 3.7579 19 1 9.6139 10.5718 4.7093 20 6 9.5160 12.3982 3.5903 21 7 9.9299 13.1442 4.5899 22 14 9.1103 13.1832 1.9445 23 1 10.3278 13.2086 1.0946 24 1 8.0503 12.3938 1.2674 25 1 8.6302 14.5714 2.1631 26 6 8.3375 4.3692 1.2885 27 6 7.8844 3.4777 0.1280 28 1 8.3550 3.8110 -0.7969 29 6 8.2801 2.0270 0.4110 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8567 0.6439 -0.8908 36 1 3.8574 0.6436 0.8892 37 1 3.8364 3.1228 0.8903 38 1 3.8358 3.1238 -0.8896 39 1 4.7265 4.8108 -0.0945 40 1 6.1115 5.3567 -1.0725 41 1 5.9089 5.3750 1.9744 42 1 5.9187 6.7957 0.9016 43 1 9.1720 6.3486 2.5140 44 1 7.3465 8.3883 1.4211 45 1 9.0311 8.1562 0.8957 46 1 8.7360 10.6551 1.8607 47 1 10.0259 14.1023 4.4727 48 1 9.4265 4.3823 1.3335 49 1 7.9388 3.9784 2.2246 50 1 8.0383 1.4092 -0.4538 51 1 9.3510 1.9742 0.6072 52 1 7.7329 1.6643 1.2811 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483899162.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:19 Heat of formation + Delta-G solvation = -106.839242 kcal Electronic energy + Delta-G solvation = -29841.279288 eV Core-core repulsion = 25648.258221 eV Total energy + Delta-G solvation = -4193.021067 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.88002 -38.76692 -38.36139 -37.79473 -35.24799 -34.45076 -33.93985 -32.73414 -31.72965 -31.23462 -28.55487 -27.74330 -26.37795 -26.07375 -24.34595 -23.60180 -22.91297 -21.45193 -20.65712 -19.46529 -19.18374 -18.34603 -17.29283 -16.82648 -16.69262 -16.31507 -16.17216 -15.76339 -15.48683 -15.25381 -15.02276 -14.75744 -14.59647 -14.15625 -13.98992 -13.89902 -13.53461 -13.35746 -13.02606 -12.73765 -12.62465 -12.49974 -12.34886 -12.32303 -12.22577 -12.08687 -12.03464 -11.83558 -11.56899 -11.44298 -11.32791 -11.24110 -11.21502 -10.92220 -10.64152 -10.62304 -10.10135 -10.00087 -9.60097 -9.31663 -8.86555 -8.61357 -8.23800 -8.18285 -6.33503 -3.85081 2.36292 2.61489 2.99500 3.03747 3.12422 3.34128 3.70984 3.95834 4.07649 4.17007 4.44075 4.52643 4.53777 4.66894 4.72079 4.75042 4.82507 4.86740 4.93521 4.97554 4.98367 5.01265 5.04564 5.14419 5.17385 5.19967 5.24717 5.28604 5.31642 5.35053 5.54306 5.58708 5.68460 5.71242 5.75158 5.77225 5.86137 5.87683 5.89294 6.02820 6.14842 6.18013 6.45516 6.72508 7.07628 7.14768 7.52714 7.55965 7.94838 8.12047 8.57170 8.92568 9.39786 9.80032 10.79615 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017209 B = 0.001815 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.644046 B =15420.979655 C =16313.448937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.392 6.392 3 C 0.060 3.940 4 C -0.103 4.103 5 C -0.141 4.141 6 C 0.517 3.483 7 O -0.532 6.532 8 N -0.609 5.609 9 C 0.106 3.894 10 C -0.125 4.125 11 C 0.088 3.912 12 H 0.043 0.957 13 N -0.664 5.664 14 C 0.049 3.951 15 C 0.449 3.551 16 O -0.564 6.564 17 N -0.590 5.590 18 C -0.306 4.306 19 H 0.119 0.881 20 C 0.042 3.958 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.269 1.269 25 H -0.276 1.276 26 C -0.133 4.133 27 C 0.148 3.852 28 H 0.070 0.930 29 C -0.138 4.138 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.353 0.647 44 H 0.086 0.914 45 H 0.044 0.956 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.076 0.924 49 H 0.079 0.921 50 H 0.078 0.922 51 H 0.045 0.955 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.966 -20.472 -16.252 30.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.016 4.016 4 C -0.141 4.141 5 C -0.181 4.181 6 C 0.306 3.694 7 O -0.409 6.409 8 N -0.344 5.344 9 C -0.017 4.017 10 C -0.164 4.164 11 C -0.022 4.022 12 H 0.061 0.939 13 N -0.297 5.297 14 C -0.084 4.084 15 C 0.235 3.765 16 O -0.446 6.446 17 N -0.230 5.230 18 C -0.435 4.435 19 H 0.137 0.863 20 C -0.161 4.161 21 N -0.521 5.521 22 Si 0.706 3.294 23 H -0.197 1.197 24 H -0.195 1.195 25 H -0.202 1.202 26 C -0.171 4.171 27 C 0.044 3.956 28 H 0.088 0.912 29 C -0.195 4.195 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.173 0.827 44 H 0.104 0.896 45 H 0.062 0.938 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.094 0.906 49 H 0.097 0.903 50 H 0.097 0.903 51 H 0.064 0.936 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.945 -21.278 -15.137 30.087 hybrid contribution 0.210 1.470 -1.773 2.313 sum -14.734 -19.808 -16.910 29.924 Atomic orbital electron populations 1.22753 0.80918 1.02853 1.00008 1.87890 1.19769 1.27985 1.95421 1.22557 0.94092 0.84757 1.00217 1.21217 0.92138 0.95807 1.04948 1.21637 0.92608 0.99330 1.04496 1.20525 0.89213 0.83899 0.75792 1.90762 1.73834 1.26934 1.49380 1.48211 1.07064 1.06302 1.72786 1.21829 0.98409 0.82375 0.99088 1.21959 0.95758 1.00042 0.98653 1.21483 0.95230 0.92374 0.93113 0.93880 1.60080 1.36260 1.00542 1.32856 1.21751 1.01223 0.89448 0.95999 1.19714 0.84494 0.82639 0.89675 1.90571 1.53769 1.72536 1.27711 1.42207 1.60921 1.06487 1.13384 1.19434 1.41042 0.89054 0.93925 0.86290 1.25039 0.97493 0.95972 0.97633 1.69621 1.45584 1.06165 1.30705 0.86670 0.78943 0.79990 0.83756 1.19674 1.19503 1.20155 1.22206 1.01193 0.94370 0.99373 1.21251 0.79126 0.97345 0.97834 0.91162 1.22195 0.99336 0.93730 1.04222 0.93989 0.94064 0.89577 0.93145 0.93284 0.90336 0.90233 0.88565 0.88862 0.89459 0.91191 0.90439 0.90440 0.82699 0.89584 0.93802 0.79726 0.91600 0.90584 0.90268 0.90327 0.93643 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.48 10.70 -35.23 -0.38 -3.86 16 3 C 0.06 0.41 5.94 37.16 0.22 0.63 16 4 C -0.10 -0.80 4.87 -26.73 -0.13 -0.93 16 5 C -0.14 -0.91 4.06 -27.88 -0.11 -1.02 16 6 C 0.52 4.97 7.50 -10.98 -0.08 4.88 16 7 O -0.53 -6.72 11.55 5.55 0.06 -6.66 16 8 N -0.61 -5.33 2.97 -165.22 -0.49 -5.82 16 9 C 0.11 0.72 6.35 -3.71 -0.02 0.70 16 10 C -0.13 -1.14 5.59 -26.61 -0.15 -1.29 16 11 C 0.09 0.93 2.46 -67.67 -0.17 0.77 16 12 H 0.04 0.43 7.80 -51.93 -0.40 0.03 16 13 N -0.66 -9.64 5.93 -107.95 -0.64 -10.28 16 14 C 0.05 0.76 5.96 -4.98 -0.03 0.73 16 15 C 0.45 9.95 7.82 -10.99 -0.09 9.87 16 16 O -0.56 -14.97 15.78 5.55 0.09 -14.88 16 17 N -0.59 -13.80 5.09 -10.97 -0.06 -13.86 16 18 C -0.31 -8.57 10.16 -14.94 -0.15 -8.72 16 19 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 21 N -0.88 -25.53 13.96 55.50 0.77 -24.75 16 22 Si 0.88 19.03 27.74 -169.99 -4.71 14.32 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 26 C -0.13 -1.32 4.65 -26.61 -0.12 -1.44 16 27 C 0.15 1.38 3.49 -67.60 -0.24 1.15 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 C -0.14 -1.43 7.61 37.16 0.28 -1.15 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 37 H 0.10 0.51 7.93 -51.93 -0.41 0.10 16 38 H 0.09 0.41 7.70 -51.93 -0.40 0.01 16 39 H 0.09 0.41 5.93 -51.93 -0.31 0.10 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.08 0.70 7.43 -51.93 -0.39 0.31 16 43 H 0.35 5.41 8.03 -39.29 -0.32 5.10 16 44 H 0.09 1.19 7.41 -51.93 -0.38 0.81 16 45 H 0.04 0.60 8.05 -51.93 -0.42 0.18 16 46 H 0.37 7.54 5.76 -40.82 -0.24 7.30 16 47 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 48 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 49 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.08 0.92 6.54 -51.92 -0.34 0.58 16 51 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 52 H 0.06 0.79 6.96 -51.93 -0.36 0.43 16 LS Contribution 408.38 15.07 6.15 6.15 Total: -1.00 -34.50 408.38 -7.98 -42.48 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -9.01 Total: 10.67 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 0.23 Total: 6.49 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.41 Total: -54.71 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.23 Total: -25.39 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.71 Total: 14.32 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.50 -7.98 -42.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483899162.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.363 kcal (2) G-P(sol) polarization free energy of solvation -34.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds