Wall clock time and date at job start Wed Apr 1 2020 00:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 113.99684 * 2 1 4 4 C 1.53002 * 109.46673 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46825 * 180.02562 * 4 3 2 6 6 C 1.50705 * 109.47123 * 179.97438 * 5 4 3 7 7 O 1.21287 * 119.99883 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00181 * 179.97438 * 6 5 4 9 9 C 1.46931 * 120.62974 * 354.21034 * 8 6 5 10 10 C 1.53193 * 108.77350 * 126.36808 * 9 8 6 11 11 C 1.53043 * 109.31138 * 54.63842 * 10 9 8 12 12 H 1.09000 * 109.46088 * 58.63764 * 11 10 9 13 13 N 1.46902 * 109.45574 * 178.61217 * 11 10 9 14 14 C 1.46903 * 110.99926 * 274.99665 * 13 11 10 15 15 C 1.50692 * 109.47037 * 180.02562 * 14 13 11 16 16 O 1.21290 * 120.00163 * 359.97438 * 15 14 13 17 17 N 1.34778 * 120.00265 * 180.02562 * 15 14 13 18 18 C 1.37089 * 120.00491 * 179.97438 * 17 15 14 19 19 H 1.08001 * 120.00034 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00645 * 179.97438 * 18 17 15 21 21 N 1.31409 * 120.00438 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99460 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47348 * 269.99639 * 22 20 18 24 24 H 1.48499 * 109.47357 * 30.00006 * 22 20 18 25 25 H 1.48502 * 109.47194 * 149.99654 * 22 20 18 26 26 C 1.53039 * 109.53576 * 298.62817 * 11 10 9 27 27 C 1.46920 * 120.63326 * 174.18704 * 8 6 5 28 28 H 1.08999 * 109.58476 * 113.70046 * 27 8 6 29 29 C 1.53002 * 109.58556 * 353.41728 * 27 8 6 30 30 H 1.09005 * 109.46744 * 299.99741 * 1 2 3 31 31 H 1.08999 * 109.47527 * 60.00153 * 1 2 3 32 32 H 1.09003 * 109.46645 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47192 * 60.00552 * 3 2 1 34 34 H 1.08997 * 109.47072 * 300.00012 * 3 2 1 35 35 H 1.08995 * 109.47384 * 59.99581 * 4 3 2 36 36 H 1.09007 * 109.46965 * 299.99792 * 4 3 2 37 37 H 1.08995 * 109.47630 * 59.99550 * 5 4 3 38 38 H 1.08997 * 109.46847 * 299.99504 * 5 4 3 39 39 H 1.09001 * 109.58127 * 6.58425 * 9 8 6 40 40 H 1.08994 * 109.70161 * 246.22911 * 9 8 6 41 41 H 1.08997 * 109.50226 * 294.68355 * 10 9 8 42 42 H 1.09007 * 109.51938 * 174.60271 * 10 9 8 43 43 H 1.00898 * 110.99392 * 151.04684 * 13 11 10 44 44 H 1.08994 * 109.46863 * 60.00048 * 14 13 11 45 45 H 1.09002 * 109.46830 * 300.00669 * 14 13 11 46 46 H 0.97004 * 119.99272 * 359.97438 * 17 15 14 47 47 H 0.97001 * 119.99824 * 179.97438 * 21 20 18 48 48 H 1.08999 * 109.49558 * 181.31350 * 26 11 10 49 49 H 1.08993 * 109.49990 * 301.41761 * 26 11 10 50 50 H 1.09008 * 109.46874 * 65.78715 * 29 27 8 51 51 H 1.08996 * 109.47172 * 185.77929 * 29 27 8 52 52 H 1.08998 * 109.47406 * 305.78667 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5824 0.0000 6 6 5.6600 2.4635 0.0000 7 8 6.1817 1.3685 0.0000 8 7 6.4240 3.5738 0.0000 9 6 5.8120 4.9035 -0.1275 10 6 6.2883 5.7791 1.0358 11 6 7.8183 5.7916 1.0665 12 1 8.1974 6.1725 0.1181 13 7 8.2787 6.6570 2.1606 14 6 8.3385 8.0609 1.7319 15 6 8.8143 8.9161 2.8778 16 8 9.0773 8.4065 3.9465 17 7 8.9467 10.2475 2.7154 18 6 9.3790 11.0257 3.7579 19 1 9.6139 10.5718 4.7093 20 6 9.5160 12.3982 3.5903 21 7 9.9299 13.1442 4.5899 22 14 9.1103 13.1832 1.9445 23 1 10.3278 13.2086 1.0946 24 1 8.0503 12.3938 1.2674 25 1 8.6302 14.5714 2.1631 26 6 8.3375 4.3692 1.2885 27 6 7.8844 3.4777 0.1280 28 1 8.3550 3.8110 -0.7969 29 6 8.2801 2.0270 0.4110 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8567 0.6439 -0.8908 36 1 3.8574 0.6436 0.8892 37 1 3.8364 3.1228 0.8903 38 1 3.8358 3.1238 -0.8896 39 1 4.7265 4.8108 -0.0945 40 1 6.1115 5.3567 -1.0725 41 1 5.9089 5.3750 1.9744 42 1 5.9187 6.7957 0.9016 43 1 9.1720 6.3486 2.5140 44 1 7.3465 8.3883 1.4211 45 1 9.0311 8.1562 0.8957 46 1 8.7360 10.6551 1.8607 47 1 10.0259 14.1023 4.4727 48 1 9.4265 4.3823 1.3335 49 1 7.9388 3.9784 2.2246 50 1 8.0383 1.4092 -0.4538 51 1 9.3510 1.9742 0.6072 52 1 7.7329 1.6643 1.2811 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483899162.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:18 Heat of formation + Delta-G solvation = -133.961770 kcal Electronic energy + Delta-G solvation = -29842.455409 eV Core-core repulsion = 25648.258221 eV Total energy + Delta-G solvation = -4194.197188 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.60309 -40.31890 -39.08501 -38.67317 -36.37358 -35.78728 -35.07645 -33.74834 -33.41020 -32.22462 -29.31804 -28.47629 -27.73293 -26.60467 -25.68764 -24.59081 -23.60016 -22.16062 -21.44754 -21.26157 -20.29287 -19.85198 -17.96326 -17.79034 -17.41428 -17.23024 -17.03028 -16.87012 -16.56396 -16.38611 -15.87837 -15.79799 -15.56257 -15.21639 -15.05823 -14.83627 -14.74164 -14.45298 -14.13030 -14.04237 -13.83689 -13.49629 -13.33425 -13.24954 -12.95767 -12.89157 -12.88645 -12.60283 -12.58432 -12.53397 -12.40290 -12.02114 -11.97824 -11.96232 -11.86092 -11.68150 -11.50139 -11.42102 -10.59781 -10.42015 -10.24111 -10.09103 -9.57128 -9.30702 -8.40311 -6.01602 1.31320 1.37134 1.46335 1.67077 1.97309 1.98605 2.24470 2.71909 2.86619 3.16376 3.35512 3.55390 3.78252 3.82404 3.99908 4.03275 4.14465 4.17497 4.19522 4.27850 4.34304 4.45267 4.47401 4.49301 4.51047 4.53020 4.55260 4.56864 4.59136 4.59818 4.69179 4.78972 4.82807 4.87521 4.91286 5.00683 5.07833 5.13649 5.23318 5.25636 5.37060 5.41547 5.54324 5.69349 5.92823 6.11046 6.26584 6.38932 6.49012 6.60993 6.89368 7.25693 7.41061 7.98369 8.77418 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017209 B = 0.001815 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.644046 B =15420.979655 C =16313.448937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.425 6.425 3 C 0.061 3.939 4 C -0.099 4.099 5 C -0.132 4.132 6 C 0.508 3.492 7 O -0.572 6.572 8 N -0.610 5.610 9 C 0.108 3.892 10 C -0.123 4.123 11 C 0.090 3.910 12 H 0.064 0.936 13 N -0.684 5.684 14 C 0.064 3.936 15 C 0.447 3.553 16 O -0.617 6.617 17 N -0.590 5.590 18 C -0.331 4.331 19 H 0.053 0.947 20 C -0.016 4.016 21 N -0.935 5.935 22 Si 0.966 3.034 23 H -0.258 1.258 24 H -0.227 1.227 25 H -0.276 1.276 26 C -0.126 4.126 27 C 0.150 3.850 28 H 0.086 0.914 29 C -0.128 4.128 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.114 0.886 38 H 0.125 0.875 39 H 0.114 0.886 40 H 0.091 0.909 41 H 0.057 0.943 42 H 0.087 0.913 43 H 0.343 0.657 44 H 0.116 0.884 45 H 0.078 0.922 46 H 0.390 0.610 47 H 0.279 0.721 48 H 0.078 0.922 49 H 0.057 0.943 50 H 0.064 0.936 51 H 0.052 0.948 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.157 -19.340 -20.526 33.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.345 6.345 3 C -0.016 4.016 4 C -0.137 4.137 5 C -0.171 4.171 6 C 0.298 3.702 7 O -0.452 6.452 8 N -0.343 5.343 9 C -0.014 4.014 10 C -0.162 4.162 11 C -0.019 4.019 12 H 0.082 0.918 13 N -0.317 5.317 14 C -0.068 4.068 15 C 0.235 3.765 16 O -0.501 6.501 17 N -0.232 5.232 18 C -0.460 4.460 19 H 0.071 0.929 20 C -0.214 4.214 21 N -0.576 5.576 22 Si 0.786 3.214 23 H -0.182 1.182 24 H -0.151 1.151 25 H -0.202 1.202 26 C -0.164 4.164 27 C 0.046 3.954 28 H 0.104 0.896 29 C -0.186 4.186 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.132 0.868 38 H 0.143 0.857 39 H 0.132 0.868 40 H 0.109 0.891 41 H 0.076 0.924 42 H 0.105 0.895 43 H 0.162 0.838 44 H 0.134 0.866 45 H 0.096 0.904 46 H 0.226 0.774 47 H 0.088 0.912 48 H 0.097 0.903 49 H 0.076 0.924 50 H 0.083 0.917 51 H 0.071 0.929 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -17.166 -20.152 -19.437 32.841 hybrid contribution 0.935 1.000 -0.294 1.400 sum -16.231 -19.152 -19.730 31.930 Atomic orbital electron populations 1.22914 0.79425 1.03663 1.01024 1.87846 1.21572 1.29404 1.95669 1.22621 0.92913 0.84324 1.01696 1.21135 0.93369 0.96407 1.02800 1.21634 0.89953 0.98790 1.06736 1.21130 0.90611 0.83477 0.74978 1.90755 1.74804 1.28473 1.51163 1.48315 1.06724 1.07106 1.72157 1.22013 0.99895 0.80636 0.98833 1.21948 0.94390 1.01011 0.98852 1.21595 0.96314 0.91481 0.92520 0.91826 1.60121 1.35962 1.00613 1.35010 1.21677 1.03199 0.88609 0.93304 1.21075 0.82076 0.82580 0.90769 1.90552 1.55375 1.73540 1.30673 1.42019 1.61379 1.06780 1.13014 1.19003 1.43315 0.90300 0.93365 0.92914 1.26149 0.96310 0.95864 1.03114 1.69812 1.46784 1.06848 1.34165 0.85346 0.80260 0.78644 0.77134 1.18201 1.15053 1.20157 1.22113 1.01298 0.94385 0.98635 1.21198 0.80029 0.96085 0.98051 0.89567 1.22041 0.99442 0.94539 1.02547 0.93145 0.92792 0.89046 0.91956 0.91302 0.92124 0.92852 0.86808 0.85730 0.86769 0.89075 0.92386 0.89471 0.83772 0.86566 0.90447 0.77393 0.91174 0.90333 0.92449 0.91680 0.92888 0.93944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.43 -7.23 10.70 -148.98 -1.59 -8.83 16 3 C 0.06 0.71 5.94 71.98 0.43 1.14 16 4 C -0.10 -1.48 4.87 30.59 0.15 -1.33 16 5 C -0.13 -1.36 4.06 29.85 0.12 -1.24 16 6 C 0.51 9.09 7.50 87.66 0.66 9.75 16 7 O -0.57 -14.74 11.55 -3.05 -0.04 -14.78 16 8 N -0.61 -9.19 2.97 -795.01 -2.36 -11.55 16 9 C 0.11 0.99 6.35 86.36 0.55 1.54 16 10 C -0.12 -1.80 5.59 30.67 0.17 -1.63 16 11 C 0.09 1.63 2.46 44.94 0.11 1.74 16 12 H 0.06 0.95 7.80 -2.39 -0.02 0.93 16 13 N -0.68 -18.53 5.93 -495.44 -2.94 -21.47 16 14 C 0.06 1.79 5.96 85.55 0.51 2.30 16 15 C 0.45 19.53 7.82 87.65 0.69 20.21 16 16 O -0.62 -33.87 15.78 -3.06 -0.05 -33.92 16 17 N -0.59 -27.02 5.09 -307.00 -1.56 -28.58 16 18 C -0.33 -19.17 10.16 84.04 0.85 -18.32 16 19 H 0.05 3.67 7.39 -2.91 -0.02 3.65 16 20 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 21 N -0.94 -56.01 13.96 21.66 0.30 -55.71 16 22 Si 0.97 37.63 27.74 68.60 1.90 39.54 16 23 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 24 H -0.23 -7.26 6.52 99.48 0.65 -6.61 16 25 H -0.28 -10.76 7.11 99.48 0.71 -10.05 16 26 C -0.13 -2.33 4.65 30.67 0.14 -2.18 16 27 C 0.15 2.55 3.49 44.98 0.16 2.71 16 28 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 29 C -0.13 -2.69 7.61 71.98 0.55 -2.14 16 30 H 0.05 0.39 8.14 -2.38 -0.02 0.38 16 31 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 0.53 8.14 -2.39 -0.02 0.52 16 35 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 36 H 0.05 1.05 8.10 -2.38 -0.02 1.04 16 37 H 0.11 0.83 7.93 -2.39 -0.02 0.81 16 38 H 0.12 0.55 7.70 -2.39 -0.02 0.53 16 39 H 0.11 0.47 5.93 -2.39 -0.01 0.46 16 40 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.09 1.14 7.43 -2.38 -0.02 1.13 16 43 H 0.34 10.33 8.03 -89.70 -0.72 9.61 16 44 H 0.12 2.61 7.41 -2.39 -0.02 2.59 16 45 H 0.08 1.71 8.05 -2.39 -0.02 1.69 16 46 H 0.39 14.50 5.76 -92.71 -0.53 13.96 16 47 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 48 H 0.08 1.40 8.10 -2.39 -0.02 1.38 16 49 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 50 H 0.06 1.55 6.54 -2.38 -0.02 1.53 16 51 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 52 H 0.04 1.07 6.96 -2.39 -0.02 1.05 16 Total: -1.00 -83.66 408.38 0.07 -83.60 By element: Atomic # 1 Polarization: 38.46 SS G_CDS: -0.39 Total: 38.07 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 6.80 Total: 13.64 kcal Atomic # 7 Polarization: -110.75 SS G_CDS: -6.56 Total: -117.31 kcal Atomic # 8 Polarization: -55.85 SS G_CDS: -1.68 Total: -57.53 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 1.90 Total: 39.54 kcal Total: -83.66 0.07 -83.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483899162.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.367 kcal (2) G-P(sol) polarization free energy of solvation -83.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds