Wall clock time and date at job start Wed Apr 1 2020 00:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00281 * 2 1 4 4 C 1.52993 * 109.47445 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47382 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46899 * 179.97438 * 5 4 3 7 7 O 1.21276 * 120.00622 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99665 * 180.02562 * 6 5 4 9 9 C 1.46927 * 120.63238 * 0.02562 * 8 6 5 10 10 C 1.53178 * 108.77792 * 233.58723 * 9 8 6 11 11 C 1.53042 * 109.34054 * 305.38239 * 10 9 8 12 12 H 1.08998 * 109.42702 * 301.30805 * 11 10 9 13 13 N 1.46901 * 109.48639 * 181.35656 * 11 10 9 14 14 C 1.46899 * 111.00139 * 84.91155 * 13 11 10 15 15 C 1.50705 * 109.46756 * 179.97438 * 14 13 11 16 16 O 1.21288 * 120.00162 * 359.97438 * 15 14 13 17 17 N 1.34781 * 119.99926 * 179.97438 * 15 14 13 18 18 C 1.37090 * 120.00052 * 179.97438 * 17 15 14 19 19 H 1.08005 * 119.99970 * 0.02562 * 18 17 15 20 20 C 1.38949 * 119.99814 * 180.02562 * 18 17 15 21 21 N 1.31412 * 120.00503 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99877 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47148 * 59.99902 * 22 20 18 24 24 H 1.48502 * 109.46944 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46884 * 299.99800 * 22 20 18 26 26 C 1.53036 * 109.54058 * 61.31389 * 11 10 9 27 27 C 1.46928 * 120.63146 * 180.02562 * 8 6 5 28 28 H 1.09000 * 109.58414 * 6.62478 * 27 8 6 29 29 C 1.52998 * 109.70248 * 246.27215 * 27 8 6 30 30 H 1.09003 * 109.47618 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47144 * 299.99906 * 1 2 3 32 32 H 1.09001 * 109.47162 * 59.99636 * 1 2 3 33 33 H 1.09005 * 109.46896 * 60.00202 * 3 2 1 34 34 H 1.09001 * 109.46960 * 300.00479 * 3 2 1 35 35 H 1.08996 * 109.47122 * 59.99563 * 4 3 2 36 36 H 1.09001 * 109.47368 * 300.00151 * 4 3 2 37 37 H 1.09005 * 109.46916 * 60.00150 * 5 4 3 38 38 H 1.08998 * 109.47303 * 299.99967 * 5 4 3 39 39 H 1.08999 * 109.58621 * 353.37832 * 9 8 6 40 40 H 1.09003 * 109.58297 * 113.65397 * 9 8 6 41 41 H 1.09003 * 109.50079 * 65.31259 * 10 9 8 42 42 H 1.09000 * 109.50150 * 185.38047 * 10 9 8 43 43 H 1.00900 * 110.99546 * 208.86827 * 13 11 10 44 44 H 1.09000 * 109.47147 * 299.99951 * 14 13 11 45 45 H 1.08997 * 109.46951 * 60.00315 * 14 13 11 46 46 H 0.97003 * 119.99339 * 0.02562 * 17 15 14 47 47 H 0.96990 * 120.00341 * 180.02562 * 21 20 18 48 48 H 1.09002 * 109.49886 * 178.71774 * 26 11 10 49 49 H 1.09000 * 109.49395 * 58.65251 * 26 11 10 50 50 H 1.08996 * 109.47260 * 300.63840 * 29 27 8 51 51 H 1.09003 * 109.47556 * 60.64135 * 29 27 8 52 52 H 1.09005 * 109.46988 * 180.63882 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1578 2.5824 -0.0013 6 6 5.6600 2.4632 -0.0013 7 8 6.1816 1.3684 -0.0004 8 7 6.4240 3.5736 -0.0013 9 6 5.8069 4.9070 -0.0007 10 6 6.3806 5.7164 -1.1678 11 6 7.9079 5.7307 -1.0723 12 1 8.2075 6.1663 -0.1191 13 7 8.4602 6.5333 -2.1718 14 6 8.4859 7.9596 -1.8212 15 6 9.0579 8.7491 -2.9704 16 8 9.4099 8.1796 -3.9818 17 7 9.1782 10.0881 -2.8744 18 6 9.6990 10.8062 -3.9196 19 1 10.0125 10.2990 -4.8202 20 6 9.8236 12.1865 -3.8203 21 7 9.4427 12.8036 -2.7244 22 14 10.5326 13.1652 -5.2448 23 1 9.6884 12.9669 -6.4503 24 1 10.5591 14.6070 -4.8901 25 1 11.9144 12.6996 -5.5261 26 6 8.4403 4.2992 -1.1686 27 6 7.8899 3.4737 -0.0019 28 1 8.1850 2.4312 -0.1207 29 6 8.4444 4.0166 1.3167 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8900 33 1 1.6886 1.8463 0.8901 34 1 1.6886 1.8464 -0.8900 35 1 3.8567 0.6438 -0.8908 36 1 3.8574 0.6435 0.8891 37 1 3.8365 3.1235 0.8888 38 1 3.8358 3.1231 -0.8912 39 1 4.7276 4.8101 -0.1188 40 1 6.0277 5.4114 0.9400 41 1 6.0799 5.2589 -2.1104 42 1 6.0031 6.7379 -1.1225 43 1 9.3795 6.2079 -2.4307 44 1 7.4717 8.3012 -1.6143 45 1 9.1059 8.1051 -0.9367 46 1 8.8970 10.5434 -2.0654 47 1 9.5293 13.7672 -2.6553 48 1 9.5293 4.3122 -1.1233 49 1 8.1206 3.8548 -2.1111 50 1 8.1440 5.0575 1.4361 51 1 8.0520 3.4278 2.1459 52 1 9.5325 3.9512 1.3077 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483899165.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:22 Heat of formation + Delta-G solvation = -127.850961 kcal Electronic energy + Delta-G solvation = -29757.191755 eV Core-core repulsion = 25563.259552 eV Total energy + Delta-G solvation = -4193.932203 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.71536 -38.72262 -38.28175 -37.80875 -35.20698 -34.19263 -33.87523 -32.65105 -31.36438 -31.01132 -28.47993 -28.02393 -26.34229 -26.03607 -24.28699 -23.74318 -22.82596 -21.77192 -20.53713 -19.31543 -18.55693 -17.89285 -17.58648 -16.83571 -16.75871 -16.23136 -15.88327 -15.69697 -15.32387 -15.23085 -15.03560 -14.53434 -14.46699 -14.09797 -13.94832 -13.78502 -13.74145 -13.46315 -13.23551 -12.93788 -12.45672 -12.42535 -12.33946 -12.25278 -12.10846 -11.98078 -11.78658 -11.56788 -11.43012 -11.41220 -11.30011 -11.25398 -11.04524 -10.86117 -10.45861 -10.37139 -10.22590 -10.08068 -9.95711 -9.51902 -8.90042 -8.47027 -8.09737 -7.97909 -6.43584 -3.84465 2.40220 2.64505 3.18795 3.24554 3.29018 3.36589 3.88563 4.02781 4.18011 4.26629 4.48880 4.55271 4.59087 4.69068 4.78101 4.83391 4.88427 4.92404 4.96749 4.98395 5.01247 5.04747 5.15051 5.17321 5.21145 5.22065 5.25120 5.29146 5.31194 5.40482 5.48866 5.68622 5.72383 5.73484 5.78355 5.82290 5.89523 5.92898 5.93625 6.03319 6.19558 6.29644 6.35062 6.74648 7.16433 7.21581 7.53215 7.63386 7.94785 8.04262 8.59380 9.16030 9.52231 10.03854 10.74022 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018678 B = 0.001725 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.722498 B =16223.594020 C =17076.069814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.392 6.392 3 C 0.061 3.939 4 C -0.104 4.104 5 C -0.138 4.138 6 C 0.518 3.482 7 O -0.542 6.542 8 N -0.606 5.606 9 C 0.105 3.895 10 C -0.124 4.124 11 C 0.088 3.912 12 H 0.046 0.954 13 N -0.665 5.665 14 C 0.052 3.948 15 C 0.440 3.560 16 O -0.583 6.583 17 N -0.563 5.563 18 C -0.301 4.301 19 H 0.102 0.898 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.274 1.274 26 C -0.130 4.130 27 C 0.140 3.860 28 H 0.101 0.899 29 C -0.163 4.163 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.042 0.958 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.351 0.649 44 H 0.085 0.915 45 H 0.042 0.958 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.075 0.925 49 H 0.077 0.923 50 H 0.062 0.938 51 H 0.057 0.943 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.105 -18.185 12.222 26.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.016 4.016 4 C -0.142 4.142 5 C -0.178 4.178 6 C 0.306 3.694 7 O -0.419 6.419 8 N -0.340 5.340 9 C -0.018 4.018 10 C -0.163 4.163 11 C -0.022 4.022 12 H 0.064 0.936 13 N -0.298 5.298 14 C -0.081 4.081 15 C 0.225 3.775 16 O -0.467 6.467 17 N -0.200 5.200 18 C -0.430 4.430 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.169 4.169 27 C 0.037 3.963 28 H 0.119 0.881 29 C -0.221 4.221 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.105 0.895 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.171 0.829 44 H 0.103 0.897 45 H 0.060 0.940 46 H 0.225 0.775 47 H 0.082 0.918 48 H 0.094 0.906 49 H 0.096 0.904 50 H 0.080 0.920 51 H 0.076 0.924 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.056 -19.051 11.241 26.209 hybrid contribution 0.621 1.444 0.472 1.641 sum -13.436 -17.607 11.714 25.055 Atomic orbital electron populations 1.22751 0.80925 1.02844 1.00007 1.87888 1.19762 1.27998 1.95420 1.22554 0.94049 0.84753 1.00240 1.21224 0.92165 0.95824 1.04990 1.21588 0.92233 0.99363 1.04602 1.20558 0.89417 0.83772 0.75643 1.90702 1.74981 1.26315 1.49917 1.48232 1.06535 1.06098 1.73122 1.21827 0.97992 0.82642 0.99349 1.21942 0.95450 1.00518 0.98425 1.21502 0.94852 0.92759 0.93123 0.93591 1.60077 1.31068 1.01306 1.37317 1.21711 1.01165 0.88943 0.96278 1.19823 0.85229 0.83097 0.89324 1.90526 1.54336 1.69800 1.32048 1.41856 1.55609 1.04999 1.17547 1.19659 1.37625 0.89135 0.96593 0.87982 1.25253 0.97683 0.96882 0.98043 1.69597 1.47703 1.10342 1.26698 0.85919 0.79534 0.78022 0.80753 1.19882 1.20973 1.19920 1.22097 1.00707 0.95081 0.98977 1.21131 0.78911 1.01430 0.94853 0.88111 1.22162 1.01413 1.01671 0.96830 0.89585 0.94068 0.93986 0.93242 0.93128 0.90223 0.90330 0.88708 0.88469 0.89540 0.91158 0.90543 0.90400 0.82900 0.89730 0.93966 0.77493 0.91826 0.90598 0.90400 0.91950 0.92400 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.58 10.70 -35.23 -0.38 -3.95 16 3 C 0.06 0.43 5.94 37.15 0.22 0.65 16 4 C -0.10 -0.86 4.87 -26.73 -0.13 -0.99 16 5 C -0.14 -0.95 4.05 -27.88 -0.11 -1.07 16 6 C 0.52 5.40 7.70 -10.98 -0.08 5.31 16 7 O -0.54 -7.71 15.40 5.56 0.09 -7.62 16 8 N -0.61 -5.64 2.68 -165.25 -0.44 -6.08 16 9 C 0.11 0.78 5.93 -3.72 -0.02 0.76 16 10 C -0.12 -1.22 5.59 -26.62 -0.15 -1.37 16 11 C 0.09 0.98 2.25 -67.67 -0.15 0.83 16 12 H 0.05 0.49 6.17 -51.93 -0.32 0.17 16 13 N -0.66 -10.15 5.93 -107.95 -0.64 -10.79 16 14 C 0.05 0.87 5.97 -4.97 -0.03 0.84 16 15 C 0.44 10.18 7.82 -10.98 -0.09 10.10 16 16 O -0.58 -15.68 15.78 5.55 0.09 -15.59 16 17 N -0.56 -14.05 5.29 -10.96 -0.06 -14.11 16 18 C -0.30 -8.31 9.68 -14.94 -0.14 -8.46 16 19 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.21 13.05 55.50 0.72 -23.49 16 22 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 C -0.13 -1.36 4.83 -26.63 -0.13 -1.48 16 27 C 0.14 1.37 3.19 -67.62 -0.22 1.16 16 28 H 0.10 1.14 7.01 -51.93 -0.36 0.78 16 29 C -0.16 -1.36 9.03 37.16 0.34 -1.03 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.04 0.19 8.14 -51.92 -0.42 -0.23 16 32 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 36 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 37 H 0.09 0.46 7.94 -51.93 -0.41 0.05 16 38 H 0.10 0.54 7.69 -51.93 -0.40 0.14 16 39 H 0.09 0.46 5.93 -51.93 -0.31 0.15 16 40 H 0.07 0.46 7.50 -51.93 -0.39 0.07 16 41 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.08 0.77 7.42 -51.93 -0.39 0.38 16 43 H 0.35 5.64 8.03 -39.29 -0.32 5.32 16 44 H 0.08 1.30 7.41 -51.93 -0.38 0.91 16 45 H 0.04 0.64 8.05 -51.93 -0.42 0.22 16 46 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 47 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 48 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 49 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.06 0.51 5.75 -51.93 -0.30 0.21 16 51 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 52 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 412.92 15.07 6.22 6.22 Total: -1.00 -33.79 412.92 -8.00 -41.79 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -8.90 Total: 10.73 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: 0.32 Total: 7.05 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: -0.42 Total: -54.47 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.20 Total: -27.17 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.79 -8.00 -41.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483899165.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.060 kcal (2) G-P(sol) polarization free energy of solvation -33.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds