Wall clock time and date at job start Wed Apr 1 2020 00:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00281 * 2 1 4 4 C 1.52993 * 109.47445 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47382 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46899 * 179.97438 * 5 4 3 7 7 O 1.21276 * 120.00622 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99665 * 180.02562 * 6 5 4 9 9 C 1.46927 * 120.63238 * 0.02562 * 8 6 5 10 10 C 1.53178 * 108.77792 * 233.58723 * 9 8 6 11 11 C 1.53042 * 109.34054 * 305.38239 * 10 9 8 12 12 H 1.08998 * 109.42702 * 301.30805 * 11 10 9 13 13 N 1.46901 * 109.48639 * 181.35656 * 11 10 9 14 14 C 1.46899 * 111.00139 * 84.91155 * 13 11 10 15 15 C 1.50705 * 109.46756 * 179.97438 * 14 13 11 16 16 O 1.21288 * 120.00162 * 359.97438 * 15 14 13 17 17 N 1.34781 * 119.99926 * 179.97438 * 15 14 13 18 18 C 1.37090 * 120.00052 * 179.97438 * 17 15 14 19 19 H 1.08005 * 119.99970 * 0.02562 * 18 17 15 20 20 C 1.38949 * 119.99814 * 180.02562 * 18 17 15 21 21 N 1.31412 * 120.00503 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99877 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47148 * 59.99902 * 22 20 18 24 24 H 1.48502 * 109.46944 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46884 * 299.99800 * 22 20 18 26 26 C 1.53036 * 109.54058 * 61.31389 * 11 10 9 27 27 C 1.46928 * 120.63146 * 180.02562 * 8 6 5 28 28 H 1.09000 * 109.58414 * 6.62478 * 27 8 6 29 29 C 1.52998 * 109.70248 * 246.27215 * 27 8 6 30 30 H 1.09003 * 109.47618 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47144 * 299.99906 * 1 2 3 32 32 H 1.09001 * 109.47162 * 59.99636 * 1 2 3 33 33 H 1.09005 * 109.46896 * 60.00202 * 3 2 1 34 34 H 1.09001 * 109.46960 * 300.00479 * 3 2 1 35 35 H 1.08996 * 109.47122 * 59.99563 * 4 3 2 36 36 H 1.09001 * 109.47368 * 300.00151 * 4 3 2 37 37 H 1.09005 * 109.46916 * 60.00150 * 5 4 3 38 38 H 1.08998 * 109.47303 * 299.99967 * 5 4 3 39 39 H 1.08999 * 109.58621 * 353.37832 * 9 8 6 40 40 H 1.09003 * 109.58297 * 113.65397 * 9 8 6 41 41 H 1.09003 * 109.50079 * 65.31259 * 10 9 8 42 42 H 1.09000 * 109.50150 * 185.38047 * 10 9 8 43 43 H 1.00900 * 110.99546 * 208.86827 * 13 11 10 44 44 H 1.09000 * 109.47147 * 299.99951 * 14 13 11 45 45 H 1.08997 * 109.46951 * 60.00315 * 14 13 11 46 46 H 0.97003 * 119.99339 * 0.02562 * 17 15 14 47 47 H 0.96990 * 120.00341 * 180.02562 * 21 20 18 48 48 H 1.09002 * 109.49886 * 178.71774 * 26 11 10 49 49 H 1.09000 * 109.49395 * 58.65251 * 26 11 10 50 50 H 1.08996 * 109.47260 * 300.63840 * 29 27 8 51 51 H 1.09003 * 109.47556 * 60.64135 * 29 27 8 52 52 H 1.09005 * 109.46988 * 180.63882 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1578 2.5824 -0.0013 6 6 5.6600 2.4632 -0.0013 7 8 6.1816 1.3684 -0.0004 8 7 6.4240 3.5736 -0.0013 9 6 5.8069 4.9070 -0.0007 10 6 6.3806 5.7164 -1.1678 11 6 7.9079 5.7307 -1.0723 12 1 8.2075 6.1663 -0.1191 13 7 8.4602 6.5333 -2.1718 14 6 8.4859 7.9596 -1.8212 15 6 9.0579 8.7491 -2.9704 16 8 9.4099 8.1796 -3.9818 17 7 9.1782 10.0881 -2.8744 18 6 9.6990 10.8062 -3.9196 19 1 10.0125 10.2990 -4.8202 20 6 9.8236 12.1865 -3.8203 21 7 9.4427 12.8036 -2.7244 22 14 10.5326 13.1652 -5.2448 23 1 9.6884 12.9669 -6.4503 24 1 10.5591 14.6070 -4.8901 25 1 11.9144 12.6996 -5.5261 26 6 8.4403 4.2992 -1.1686 27 6 7.8899 3.4737 -0.0019 28 1 8.1850 2.4312 -0.1207 29 6 8.4444 4.0166 1.3167 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8900 33 1 1.6886 1.8463 0.8901 34 1 1.6886 1.8464 -0.8900 35 1 3.8567 0.6438 -0.8908 36 1 3.8574 0.6435 0.8891 37 1 3.8365 3.1235 0.8888 38 1 3.8358 3.1231 -0.8912 39 1 4.7276 4.8101 -0.1188 40 1 6.0277 5.4114 0.9400 41 1 6.0799 5.2589 -2.1104 42 1 6.0031 6.7379 -1.1225 43 1 9.3795 6.2079 -2.4307 44 1 7.4717 8.3012 -1.6143 45 1 9.1059 8.1051 -0.9367 46 1 8.8970 10.5434 -2.0654 47 1 9.5293 13.7672 -2.6553 48 1 9.5293 4.3122 -1.1233 49 1 8.1206 3.8548 -2.1111 50 1 8.1440 5.0575 1.4361 51 1 8.0520 3.4278 2.1459 52 1 9.5325 3.9512 1.3077 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483899165.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:22 Heat of formation + Delta-G solvation = -153.036742 kcal Electronic energy + Delta-G solvation = -29758.283893 eV Core-core repulsion = 25563.259552 eV Total energy + Delta-G solvation = -4195.024341 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.51013 -40.17816 -39.20463 -38.71961 -36.41350 -35.76112 -34.85500 -33.39815 -33.24429 -32.12565 -29.32329 -28.64668 -27.73383 -26.64632 -25.80470 -24.62223 -23.56325 -22.58495 -21.32275 -21.03429 -19.91070 -19.34443 -18.41163 -17.75560 -17.35933 -17.33221 -16.89638 -16.61851 -16.44179 -16.28831 -16.19075 -15.76656 -15.62890 -15.21330 -15.12603 -14.86415 -14.63816 -14.38745 -14.23309 -13.82730 -13.74624 -13.46666 -13.36834 -13.03979 -12.99271 -12.93067 -12.82602 -12.71271 -12.60424 -12.42485 -12.32384 -12.12298 -12.09394 -11.97296 -11.88507 -11.70480 -11.49473 -11.22849 -10.77865 -10.59515 -10.31965 -10.00309 -9.67761 -9.29290 -8.45673 -5.94219 1.40398 1.42623 1.53088 1.63022 1.94860 2.07124 2.29939 2.85652 2.91382 3.21800 3.46146 3.54421 3.77403 3.82544 3.98587 4.02822 4.15258 4.19553 4.22314 4.29515 4.33266 4.43820 4.47125 4.48747 4.51414 4.53902 4.55157 4.57818 4.60575 4.61778 4.67566 4.71868 4.78920 4.87753 4.93107 4.99510 5.05594 5.12274 5.13030 5.24613 5.25702 5.41519 5.44778 5.60533 5.92947 6.15598 6.26814 6.41141 6.43854 6.61804 7.14004 7.18128 7.57944 8.13766 8.71266 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018678 B = 0.001725 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.722498 B =16223.594020 C =17076.069814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.425 6.425 3 C 0.061 3.939 4 C -0.101 4.101 5 C -0.129 4.129 6 C 0.510 3.490 7 O -0.590 6.590 8 N -0.605 5.605 9 C 0.107 3.893 10 C -0.123 4.123 11 C 0.090 3.910 12 H 0.063 0.937 13 N -0.680 5.680 14 C 0.068 3.932 15 C 0.436 3.564 16 O -0.626 6.626 17 N -0.572 5.572 18 C -0.336 4.336 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.918 5.918 22 Si 0.991 3.009 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.273 1.273 26 C -0.123 4.123 27 C 0.141 3.859 28 H 0.079 0.921 29 C -0.155 4.155 30 H 0.091 0.909 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.127 0.873 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.090 0.910 41 H 0.058 0.942 42 H 0.084 0.916 43 H 0.343 0.657 44 H 0.107 0.893 45 H 0.067 0.933 46 H 0.397 0.603 47 H 0.278 0.722 48 H 0.079 0.921 49 H 0.057 0.943 50 H 0.071 0.929 51 H 0.056 0.944 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.646 -16.811 13.712 26.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.345 6.345 3 C -0.015 4.015 4 C -0.139 4.139 5 C -0.168 4.168 6 C 0.300 3.700 7 O -0.471 6.471 8 N -0.337 5.337 9 C -0.015 4.015 10 C -0.162 4.162 11 C -0.019 4.019 12 H 0.080 0.920 13 N -0.313 5.313 14 C -0.064 4.064 15 C 0.224 3.776 16 O -0.512 6.512 17 N -0.209 5.209 18 C -0.466 4.466 19 H 0.095 0.905 20 C -0.210 4.210 21 N -0.559 5.559 22 Si 0.815 3.185 23 H -0.198 1.198 24 H -0.194 1.194 25 H -0.198 1.198 26 C -0.161 4.161 27 C 0.037 3.963 28 H 0.097 0.903 29 C -0.213 4.213 30 H 0.110 0.890 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.145 0.855 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.108 0.892 41 H 0.077 0.923 42 H 0.102 0.898 43 H 0.162 0.838 44 H 0.125 0.875 45 H 0.084 0.916 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.098 0.902 49 H 0.076 0.924 50 H 0.090 0.910 51 H 0.075 0.925 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.627 -17.651 12.765 26.809 hybrid contribution 1.104 0.949 -0.003 1.456 sum -14.523 -16.702 12.762 25.549 Atomic orbital electron populations 1.22916 0.79381 1.03673 1.01054 1.87843 1.21612 1.29401 1.95677 1.22611 0.92699 0.84352 1.01816 1.21147 0.93567 0.96376 1.02783 1.21609 0.89256 0.98925 1.07041 1.21236 0.90948 0.83200 0.74627 1.90684 1.76073 1.28176 1.52187 1.48334 1.06259 1.06832 1.72280 1.22009 0.99394 0.81052 0.99055 1.21930 0.94241 1.01200 0.98787 1.21609 0.95746 0.92176 0.92398 0.91952 1.60118 1.30802 1.00881 1.39498 1.21567 1.02142 0.88875 0.93824 1.20964 0.83597 0.82719 0.90353 1.90496 1.55810 1.70538 1.34391 1.41915 1.56054 1.05766 1.17210 1.19619 1.39783 0.90141 0.97033 0.90491 1.25988 0.97441 0.97160 1.00437 1.69651 1.47645 1.10852 1.27754 0.85023 0.78617 0.77132 0.77768 1.19836 1.19422 1.19828 1.22006 1.00990 0.94794 0.98345 1.21038 0.79696 1.00143 0.95413 0.90258 1.22099 1.01720 1.01954 0.95543 0.89045 0.92802 0.93071 0.91237 0.91763 0.92837 0.92267 0.85515 0.86341 0.86624 0.89188 0.92277 0.89775 0.83817 0.87523 0.91569 0.76901 0.91289 0.90237 0.92439 0.90965 0.92520 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.43 -7.47 10.70 -148.98 -1.59 -9.06 16 3 C 0.06 0.76 5.94 71.98 0.43 1.19 16 4 C -0.10 -1.62 4.87 30.59 0.15 -1.47 16 5 C -0.13 -1.48 4.05 29.85 0.12 -1.36 16 6 C 0.51 10.19 7.70 87.66 0.67 10.86 16 7 O -0.59 -17.37 15.40 -3.02 -0.05 -17.41 16 8 N -0.60 -10.22 2.68 -795.12 -2.13 -12.35 16 9 C 0.11 1.20 5.93 86.36 0.51 1.72 16 10 C -0.12 -2.09 5.59 30.67 0.17 -1.92 16 11 C 0.09 1.84 2.25 44.94 0.10 1.94 16 12 H 0.06 1.12 6.17 -2.39 -0.01 1.10 16 13 N -0.68 -20.03 5.93 -495.44 -2.94 -22.97 16 14 C 0.07 2.16 5.97 85.56 0.51 2.68 16 15 C 0.44 20.19 7.82 87.66 0.69 20.88 16 16 O -0.63 -34.39 15.78 -3.05 -0.05 -34.44 16 17 N -0.57 -28.67 5.29 -306.98 -1.62 -30.29 16 18 C -0.34 -18.88 9.68 84.04 0.81 -18.07 16 19 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 20 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 21 N -0.92 -48.53 13.05 21.66 0.28 -48.24 16 22 Si 0.99 42.40 29.55 68.60 2.03 44.43 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 24 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 26 C -0.12 -2.49 4.83 30.66 0.15 -2.35 16 27 C 0.14 2.66 3.19 44.96 0.14 2.81 16 28 H 0.08 1.86 7.01 -2.39 -0.02 1.85 16 29 C -0.16 -2.30 9.03 71.98 0.65 -1.65 16 30 H 0.09 0.77 8.14 -2.39 -0.02 0.76 16 31 H 0.05 0.40 8.14 -2.38 -0.02 0.38 16 32 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 36 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 37 H 0.13 0.69 7.94 -2.38 -0.02 0.67 16 38 H 0.12 0.91 7.69 -2.39 -0.02 0.89 16 39 H 0.12 0.67 5.93 -2.39 -0.01 0.66 16 40 H 0.09 0.75 7.50 -2.39 -0.02 0.74 16 41 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.08 1.37 7.42 -2.39 -0.02 1.35 16 43 H 0.34 10.97 8.03 -89.69 -0.72 10.25 16 44 H 0.11 2.96 7.41 -2.39 -0.02 2.94 16 45 H 0.07 1.82 8.05 -2.39 -0.02 1.80 16 46 H 0.40 18.70 7.90 -92.71 -0.73 17.97 16 47 H 0.28 13.77 8.31 -92.72 -0.77 13.00 16 48 H 0.08 1.54 8.10 -2.39 -0.02 1.52 16 49 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.07 0.93 5.75 -2.39 -0.01 0.92 16 51 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 52 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 Total: -1.00 -76.18 412.92 0.22 -75.96 By element: Atomic # 1 Polarization: 38.24 SS G_CDS: -0.52 Total: 37.71 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: 6.82 Total: 16.67 kcal Atomic # 7 Polarization: -107.45 SS G_CDS: -6.41 Total: -113.86 kcal Atomic # 8 Polarization: -59.22 SS G_CDS: -1.69 Total: -60.91 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -76.18 0.22 -75.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483899165.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.078 kcal (2) G-P(sol) polarization free energy of solvation -76.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds