Wall clock time and date at job start Wed Apr 1 2020 00:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00183 * 2 1 4 4 C 1.53004 * 109.47159 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47152 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47314 * 180.02562 * 5 4 3 7 7 O 1.21288 * 119.99633 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00263 * 180.02562 * 6 5 4 9 9 C 1.46922 * 120.63051 * 359.97438 * 8 6 5 10 10 C 1.53190 * 108.77652 * 126.41444 * 9 8 6 11 11 C 1.53034 * 109.31041 * 54.63630 * 10 9 8 12 12 H 1.08995 * 109.46122 * 58.64229 * 11 10 9 13 13 N 1.46903 * 109.45785 * 178.61350 * 11 10 9 14 14 C 1.46896 * 110.99955 * 275.00042 * 13 11 10 15 15 C 1.50700 * 109.46942 * 179.97438 * 14 13 11 16 16 O 1.21293 * 120.00282 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00075 * 179.97438 * 15 14 13 18 18 C 1.37104 * 120.00173 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99666 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00001 * 180.27893 * 18 17 15 21 21 N 1.31414 * 119.99893 * 359.72318 * 20 18 17 22 22 Si 1.86801 * 119.99957 * 179.72309 * 20 18 17 23 23 H 1.48494 * 109.47230 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.46780 * 119.99924 * 22 20 18 25 25 H 1.48495 * 109.46909 * 239.99525 * 22 20 18 26 26 C 1.53040 * 109.53917 * 298.62948 * 11 10 9 27 27 C 1.46924 * 120.63092 * 180.02562 * 8 6 5 28 28 H 1.09001 * 109.58764 * 353.36858 * 27 8 6 29 29 C 1.52995 * 109.58929 * 113.65622 * 27 8 6 30 30 H 1.09006 * 109.46499 * 300.00000 * 1 2 3 31 31 H 1.08995 * 109.47056 * 59.99693 * 1 2 3 32 32 H 1.08992 * 109.47184 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46937 * 60.00341 * 3 2 1 34 34 H 1.08996 * 109.47246 * 300.00204 * 3 2 1 35 35 H 1.09000 * 109.47132 * 60.00198 * 4 3 2 36 36 H 1.08996 * 109.46993 * 300.00095 * 4 3 2 37 37 H 1.09000 * 109.47055 * 60.00011 * 5 4 3 38 38 H 1.09006 * 109.47115 * 299.99856 * 5 4 3 39 39 H 1.09006 * 109.58439 * 6.62280 * 9 8 6 40 40 H 1.08998 * 109.58682 * 246.20668 * 9 8 6 41 41 H 1.09003 * 109.49381 * 294.68110 * 10 9 8 42 42 H 1.09001 * 109.51810 * 174.60417 * 10 9 8 43 43 H 1.00895 * 111.00244 * 151.04379 * 13 11 10 44 44 H 1.08994 * 109.47346 * 60.00149 * 14 13 11 45 45 H 1.08998 * 109.47279 * 299.99821 * 14 13 11 46 46 H 0.97000 * 120.00140 * 0.02562 * 17 15 14 47 47 H 0.97004 * 119.99542 * 180.02562 * 21 20 18 48 48 H 1.08998 * 109.49723 * 181.31511 * 26 11 10 49 49 H 1.08997 * 109.50100 * 301.42113 * 26 11 10 50 50 H 1.09000 * 109.47492 * 59.99538 * 29 27 8 51 51 H 1.09000 * 109.47449 * 180.02562 * 29 27 8 52 52 H 1.09003 * 109.47063 * 299.99523 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1579 2.5823 0.0000 6 6 5.6602 2.4633 -0.0013 7 8 6.1817 1.3683 -0.0021 8 7 6.4242 3.5736 -0.0004 9 6 5.8070 4.9069 0.0011 10 6 6.3816 5.7149 1.1689 11 6 7.9088 5.7293 1.0713 12 1 8.2076 6.1653 0.1181 13 7 8.4619 6.5311 2.1710 14 6 8.4888 7.9574 1.8207 15 6 9.0604 8.7463 2.9705 16 8 9.4105 8.1765 3.9824 17 7 9.1827 10.0851 2.8744 18 6 9.7033 10.8027 3.9203 19 1 10.0149 10.2952 4.8212 20 6 9.8239 12.1835 3.8235 21 7 9.4441 12.8010 2.7274 22 14 10.5260 13.1621 5.2514 23 1 10.8748 12.2384 6.3605 24 1 11.7450 13.8834 4.8052 25 1 9.5157 14.1427 5.7236 26 6 8.4413 4.2977 1.1663 27 6 7.8900 3.4737 -0.0022 28 1 8.1853 2.4309 0.1145 29 6 8.4396 4.0178 -1.3223 30 1 -0.3632 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8464 -0.8899 35 1 3.8568 0.6438 -0.8909 36 1 3.8575 0.6435 0.8891 37 1 3.8366 3.1227 0.8904 38 1 3.8360 3.1238 -0.8896 39 1 4.7278 4.8099 0.1199 40 1 6.0291 5.4135 -0.9381 41 1 6.0815 5.2562 2.1111 42 1 6.0046 6.7367 1.1252 43 1 9.3809 6.2049 2.4296 44 1 7.4750 8.3000 1.6140 45 1 9.1088 8.1027 0.9361 46 1 8.9024 10.5409 2.0654 47 1 9.5287 13.7650 2.6597 48 1 9.5302 4.3108 1.1201 49 1 8.1218 3.8524 2.1084 50 1 8.1475 5.0619 -1.4347 51 1 9.5270 3.9424 -1.3218 52 1 8.0359 3.4363 -2.1512 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483899167.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:27 Heat of formation + Delta-G solvation = -127.918966 kcal Electronic energy + Delta-G solvation = -29757.888781 eV Core-core repulsion = 25563.953629 eV Total energy + Delta-G solvation = -4193.935152 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.71522 -38.72264 -38.28259 -37.80864 -35.20889 -34.19093 -33.87711 -32.64420 -31.36630 -31.01257 -28.48191 -28.02539 -26.34492 -26.03684 -24.28944 -23.74276 -22.82630 -21.77271 -20.53717 -19.31875 -18.55828 -17.89410 -17.58599 -16.83616 -16.75869 -16.23237 -15.88494 -15.69742 -15.32574 -15.23083 -15.03947 -14.53567 -14.46761 -14.09709 -13.94365 -13.78277 -13.74346 -13.46594 -13.23648 -12.93915 -12.45649 -12.42558 -12.34093 -12.25662 -12.10888 -11.98170 -11.78666 -11.57379 -11.43028 -11.41464 -11.30181 -11.25838 -11.08349 -10.86480 -10.37691 -10.35682 -10.23876 -10.08097 -9.95683 -9.54105 -8.90032 -8.47200 -8.09925 -7.98099 -6.44074 -3.84816 2.40158 2.64562 3.14720 3.25518 3.32851 3.36586 3.88293 4.02545 4.17952 4.26579 4.48873 4.55280 4.59031 4.69072 4.77993 4.83294 4.88420 4.92391 4.96585 4.98361 5.01200 5.04714 5.14935 5.17251 5.21025 5.21870 5.25137 5.29067 5.31018 5.40322 5.48757 5.68556 5.72289 5.73489 5.78261 5.82196 5.89503 5.92796 5.93463 6.03231 6.19400 6.29534 6.34997 6.74622 7.16405 7.21438 7.53401 7.63257 7.94772 8.04528 8.59007 9.15983 9.52089 10.03527 10.73699 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018660 B = 0.001726 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.199097 B =16220.200049 C =17073.600981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.392 6.392 3 C 0.061 3.939 4 C -0.104 4.104 5 C -0.138 4.138 6 C 0.518 3.482 7 O -0.542 6.542 8 N -0.606 5.606 9 C 0.105 3.895 10 C -0.125 4.125 11 C 0.088 3.912 12 H 0.046 0.954 13 N -0.665 5.665 14 C 0.052 3.948 15 C 0.440 3.560 16 O -0.583 6.583 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 C -0.130 4.130 27 C 0.140 3.860 28 H 0.101 0.899 29 C -0.163 4.163 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.351 0.649 44 H 0.085 0.915 45 H 0.043 0.957 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.075 0.925 49 H 0.077 0.923 50 H 0.062 0.938 51 H 0.068 0.932 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.107 -18.231 -12.217 26.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.016 4.016 4 C -0.142 4.142 5 C -0.178 4.178 6 C 0.306 3.694 7 O -0.419 6.419 8 N -0.340 5.340 9 C -0.018 4.018 10 C -0.163 4.163 11 C -0.022 4.022 12 H 0.064 0.936 13 N -0.298 5.298 14 C -0.081 4.081 15 C 0.226 3.774 16 O -0.467 6.467 17 N -0.201 5.201 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.168 4.168 27 C 0.037 3.963 28 H 0.119 0.881 29 C -0.221 4.221 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.171 0.829 44 H 0.103 0.897 45 H 0.060 0.940 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.094 0.906 49 H 0.096 0.904 50 H 0.081 0.919 51 H 0.087 0.913 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.059 -19.108 -11.226 26.245 hybrid contribution 0.608 1.464 -0.489 1.659 sum -13.451 -17.643 -11.716 25.089 Atomic orbital electron populations 1.22750 0.80924 1.02844 1.00008 1.87889 1.19763 1.27998 1.95421 1.22554 0.94050 0.84754 1.00239 1.21226 0.92163 0.95824 1.04987 1.21588 0.92234 0.99363 1.04600 1.20560 0.89419 0.83777 0.75645 1.90705 1.74992 1.26305 1.49926 1.48232 1.06546 1.06098 1.73114 1.21833 0.97987 0.82641 0.99356 1.21946 0.95440 1.00529 0.98426 1.21505 0.94854 0.92768 0.93121 0.93576 1.60078 1.31066 1.01304 1.37319 1.21710 1.01172 0.88949 0.96275 1.19826 0.85184 0.83103 0.89322 1.90529 1.54346 1.69778 1.32016 1.41874 1.55640 1.05025 1.17548 1.19761 1.37443 0.89111 0.96545 0.87870 1.25258 0.97717 0.96890 0.98070 1.69621 1.47860 1.10174 1.26677 0.85801 0.78373 0.79357 0.80832 1.19211 1.20768 1.20747 1.22111 1.00698 0.95084 0.98950 1.21155 0.78906 1.01438 0.94833 0.88110 1.22161 1.01433 1.01678 0.96804 0.93993 0.94059 0.89586 0.93123 0.93249 0.90330 0.90224 0.88468 0.88711 0.89523 0.91157 0.90545 0.90400 0.82903 0.89731 0.93955 0.77500 0.91938 0.90602 0.90384 0.91943 0.91290 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.58 10.70 -35.23 -0.38 -3.95 16 3 C 0.06 0.43 5.94 37.16 0.22 0.65 16 4 C -0.10 -0.86 4.87 -26.73 -0.13 -0.99 16 5 C -0.14 -0.95 4.05 -27.88 -0.11 -1.07 16 6 C 0.52 5.39 7.70 -10.99 -0.08 5.31 16 7 O -0.54 -7.71 15.40 5.55 0.09 -7.62 16 8 N -0.61 -5.63 2.68 -165.20 -0.44 -6.08 16 9 C 0.11 0.78 5.93 -3.71 -0.02 0.75 16 10 C -0.12 -1.22 5.59 -26.62 -0.15 -1.37 16 11 C 0.09 0.98 2.25 -67.67 -0.15 0.83 16 12 H 0.05 0.49 6.16 -51.93 -0.32 0.17 16 13 N -0.66 -10.13 5.93 -107.96 -0.64 -10.78 16 14 C 0.05 0.87 5.96 -4.98 -0.03 0.84 16 15 C 0.44 10.18 7.82 -10.98 -0.09 10.10 16 16 O -0.58 -15.67 15.78 5.55 0.09 -15.58 16 17 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 18 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 19 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.22 13.05 55.50 0.72 -23.50 16 22 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 C -0.13 -1.35 4.84 -26.59 -0.13 -1.48 16 27 C 0.14 1.37 3.20 -67.58 -0.22 1.16 16 28 H 0.10 1.14 7.01 -51.93 -0.36 0.78 16 29 C -0.16 -1.36 9.03 37.16 0.34 -1.03 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 36 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 37 H 0.10 0.54 7.69 -51.93 -0.40 0.14 16 38 H 0.09 0.46 7.94 -51.93 -0.41 0.05 16 39 H 0.09 0.46 5.93 -51.93 -0.31 0.15 16 40 H 0.07 0.46 7.50 -51.93 -0.39 0.07 16 41 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.08 0.77 7.43 -51.93 -0.39 0.38 16 43 H 0.35 5.63 8.03 -39.29 -0.32 5.31 16 44 H 0.08 1.29 7.41 -51.93 -0.39 0.91 16 45 H 0.04 0.64 8.05 -51.93 -0.42 0.23 16 46 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 47 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 48 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 49 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.06 0.51 5.74 -51.93 -0.30 0.21 16 51 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 52 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 412.91 15.07 6.22 6.22 Total: -1.00 -33.85 412.91 -8.00 -41.85 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -8.90 Total: 10.66 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 0.32 Total: 7.06 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.42 Total: -54.47 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.20 Total: -27.16 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.85 -8.00 -41.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483899167.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.071 kcal (2) G-P(sol) polarization free energy of solvation -33.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds