Wall clock time and date at job start Wed Apr 1 2020 00:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00183 * 2 1 4 4 C 1.53004 * 109.47159 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47152 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47314 * 180.02562 * 5 4 3 7 7 O 1.21288 * 119.99633 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00263 * 180.02562 * 6 5 4 9 9 C 1.46922 * 120.63051 * 359.97438 * 8 6 5 10 10 C 1.53190 * 108.77652 * 126.41444 * 9 8 6 11 11 C 1.53034 * 109.31041 * 54.63630 * 10 9 8 12 12 H 1.08995 * 109.46122 * 58.64229 * 11 10 9 13 13 N 1.46903 * 109.45785 * 178.61350 * 11 10 9 14 14 C 1.46896 * 110.99955 * 275.00042 * 13 11 10 15 15 C 1.50700 * 109.46942 * 179.97438 * 14 13 11 16 16 O 1.21293 * 120.00282 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00075 * 179.97438 * 15 14 13 18 18 C 1.37104 * 120.00173 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99666 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00001 * 180.27893 * 18 17 15 21 21 N 1.31414 * 119.99893 * 359.72318 * 20 18 17 22 22 Si 1.86801 * 119.99957 * 179.72309 * 20 18 17 23 23 H 1.48494 * 109.47230 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.46780 * 119.99924 * 22 20 18 25 25 H 1.48495 * 109.46909 * 239.99525 * 22 20 18 26 26 C 1.53040 * 109.53917 * 298.62948 * 11 10 9 27 27 C 1.46924 * 120.63092 * 180.02562 * 8 6 5 28 28 H 1.09001 * 109.58764 * 353.36858 * 27 8 6 29 29 C 1.52995 * 109.58929 * 113.65622 * 27 8 6 30 30 H 1.09006 * 109.46499 * 300.00000 * 1 2 3 31 31 H 1.08995 * 109.47056 * 59.99693 * 1 2 3 32 32 H 1.08992 * 109.47184 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46937 * 60.00341 * 3 2 1 34 34 H 1.08996 * 109.47246 * 300.00204 * 3 2 1 35 35 H 1.09000 * 109.47132 * 60.00198 * 4 3 2 36 36 H 1.08996 * 109.46993 * 300.00095 * 4 3 2 37 37 H 1.09000 * 109.47055 * 60.00011 * 5 4 3 38 38 H 1.09006 * 109.47115 * 299.99856 * 5 4 3 39 39 H 1.09006 * 109.58439 * 6.62280 * 9 8 6 40 40 H 1.08998 * 109.58682 * 246.20668 * 9 8 6 41 41 H 1.09003 * 109.49381 * 294.68110 * 10 9 8 42 42 H 1.09001 * 109.51810 * 174.60417 * 10 9 8 43 43 H 1.00895 * 111.00244 * 151.04379 * 13 11 10 44 44 H 1.08994 * 109.47346 * 60.00149 * 14 13 11 45 45 H 1.08998 * 109.47279 * 299.99821 * 14 13 11 46 46 H 0.97000 * 120.00140 * 0.02562 * 17 15 14 47 47 H 0.97004 * 119.99542 * 180.02562 * 21 20 18 48 48 H 1.08998 * 109.49723 * 181.31511 * 26 11 10 49 49 H 1.08997 * 109.50100 * 301.42113 * 26 11 10 50 50 H 1.09000 * 109.47492 * 59.99538 * 29 27 8 51 51 H 1.09000 * 109.47449 * 180.02562 * 29 27 8 52 52 H 1.09003 * 109.47063 * 299.99523 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1579 2.5823 0.0000 6 6 5.6602 2.4633 -0.0013 7 8 6.1817 1.3683 -0.0021 8 7 6.4242 3.5736 -0.0004 9 6 5.8070 4.9069 0.0011 10 6 6.3816 5.7149 1.1689 11 6 7.9088 5.7293 1.0713 12 1 8.2076 6.1653 0.1181 13 7 8.4619 6.5311 2.1710 14 6 8.4888 7.9574 1.8207 15 6 9.0604 8.7463 2.9705 16 8 9.4105 8.1765 3.9824 17 7 9.1827 10.0851 2.8744 18 6 9.7033 10.8027 3.9203 19 1 10.0149 10.2952 4.8212 20 6 9.8239 12.1835 3.8235 21 7 9.4441 12.8010 2.7274 22 14 10.5260 13.1621 5.2514 23 1 10.8748 12.2384 6.3605 24 1 11.7450 13.8834 4.8052 25 1 9.5157 14.1427 5.7236 26 6 8.4413 4.2977 1.1663 27 6 7.8900 3.4737 -0.0022 28 1 8.1853 2.4309 0.1145 29 6 8.4396 4.0178 -1.3223 30 1 -0.3632 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8464 -0.8899 35 1 3.8568 0.6438 -0.8909 36 1 3.8575 0.6435 0.8891 37 1 3.8366 3.1227 0.8904 38 1 3.8360 3.1238 -0.8896 39 1 4.7278 4.8099 0.1199 40 1 6.0291 5.4135 -0.9381 41 1 6.0815 5.2562 2.1111 42 1 6.0046 6.7367 1.1252 43 1 9.3809 6.2049 2.4296 44 1 7.4750 8.3000 1.6140 45 1 9.1088 8.1027 0.9361 46 1 8.9024 10.5409 2.0654 47 1 9.5287 13.7650 2.6597 48 1 9.5302 4.3108 1.1201 49 1 8.1218 3.8524 2.1084 50 1 8.1475 5.0619 -1.4347 51 1 9.5270 3.9424 -1.3218 52 1 8.0359 3.4363 -2.1512 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483899167.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:26 Heat of formation + Delta-G solvation = -153.164904 kcal Electronic energy + Delta-G solvation = -29758.983527 eV Core-core repulsion = 25563.953629 eV Total energy + Delta-G solvation = -4195.029898 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.50943 -40.17978 -39.20335 -38.71882 -36.41469 -35.76317 -34.85286 -33.39226 -33.24432 -32.12757 -29.32532 -28.64634 -27.73811 -26.64647 -25.80800 -24.62044 -23.56286 -22.58488 -21.32299 -21.03652 -19.91308 -19.34522 -18.41108 -17.75664 -17.36040 -17.33203 -16.90014 -16.61936 -16.44828 -16.28843 -16.18591 -15.76504 -15.62536 -15.21744 -15.12609 -14.86555 -14.63683 -14.38640 -14.23522 -13.82803 -13.75026 -13.48084 -13.36727 -13.03973 -12.99297 -12.93348 -12.83038 -12.71243 -12.60426 -12.40147 -12.31985 -12.12006 -12.09748 -11.97332 -11.88529 -11.70609 -11.50711 -11.22778 -10.77803 -10.59533 -10.32132 -10.00235 -9.67698 -9.29334 -8.46298 -5.94641 1.36957 1.42661 1.56393 1.62994 1.94973 2.06750 2.29731 2.85648 2.91273 3.21371 3.46023 3.54402 3.77347 3.82597 3.98609 4.02771 4.15253 4.19603 4.22238 4.29457 4.33192 4.43752 4.47139 4.48691 4.51467 4.53912 4.55069 4.57824 4.60648 4.61761 4.67607 4.71818 4.78908 4.87782 4.93070 4.99639 5.05539 5.12291 5.13011 5.24614 5.25714 5.41821 5.44798 5.60540 5.92999 6.15625 6.26800 6.41146 6.43879 6.61470 7.13992 7.18155 7.57782 8.13541 8.71149 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018660 B = 0.001726 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.199097 B =16220.200049 C =17073.600981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.425 6.425 3 C 0.061 3.939 4 C -0.100 4.100 5 C -0.129 4.129 6 C 0.510 3.490 7 O -0.591 6.591 8 N -0.605 5.605 9 C 0.107 3.893 10 C -0.123 4.123 11 C 0.090 3.910 12 H 0.063 0.937 13 N -0.681 5.681 14 C 0.068 3.932 15 C 0.436 3.564 16 O -0.626 6.626 17 N -0.573 5.573 18 C -0.334 4.334 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.919 5.919 22 Si 0.991 3.009 23 H -0.275 1.275 24 H -0.271 1.271 25 H -0.271 1.271 26 C -0.123 4.123 27 C 0.141 3.859 28 H 0.079 0.921 29 C -0.155 4.155 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.119 0.881 38 H 0.127 0.873 39 H 0.116 0.884 40 H 0.090 0.910 41 H 0.058 0.942 42 H 0.084 0.916 43 H 0.343 0.657 44 H 0.107 0.893 45 H 0.067 0.933 46 H 0.397 0.603 47 H 0.277 0.723 48 H 0.079 0.921 49 H 0.057 0.943 50 H 0.072 0.928 51 H 0.074 0.926 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.658 -16.819 -13.730 26.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.345 6.345 3 C -0.015 4.015 4 C -0.139 4.139 5 C -0.168 4.168 6 C 0.300 3.700 7 O -0.471 6.471 8 N -0.337 5.337 9 C -0.015 4.015 10 C -0.162 4.162 11 C -0.019 4.019 12 H 0.081 0.919 13 N -0.313 5.313 14 C -0.064 4.064 15 C 0.224 3.776 16 O -0.512 6.512 17 N -0.210 5.210 18 C -0.464 4.464 19 H 0.095 0.905 20 C -0.211 4.211 21 N -0.560 5.560 22 Si 0.815 3.185 23 H -0.200 1.200 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.161 4.161 27 C 0.037 3.963 28 H 0.097 0.903 29 C -0.213 4.213 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.137 0.863 38 H 0.145 0.855 39 H 0.134 0.866 40 H 0.108 0.892 41 H 0.077 0.923 42 H 0.102 0.898 43 H 0.162 0.838 44 H 0.125 0.875 45 H 0.085 0.915 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.098 0.902 49 H 0.076 0.924 50 H 0.090 0.910 51 H 0.093 0.907 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.639 -17.667 -12.777 26.832 hybrid contribution 1.095 0.961 -0.006 1.457 sum -14.544 -16.706 -12.782 25.573 Atomic orbital electron populations 1.22915 0.79380 1.03672 1.01055 1.87844 1.21613 1.29401 1.95677 1.22612 0.92699 0.84353 1.01815 1.21149 0.93566 0.96377 1.02780 1.21610 0.89260 0.98924 1.07039 1.21237 0.90950 0.83204 0.74628 1.90687 1.76084 1.28167 1.52198 1.48334 1.06271 1.06831 1.72271 1.22015 0.99385 0.81055 0.99053 1.21933 0.94239 1.01205 0.98788 1.21613 0.95741 0.92185 0.92400 0.91931 1.60119 1.30803 1.00879 1.39501 1.21566 1.02147 0.88880 0.93817 1.20968 0.83550 0.82723 0.90355 1.90499 1.55829 1.70519 1.34370 1.41929 1.56083 1.05790 1.17202 1.19688 1.39637 0.90106 0.96941 0.90517 1.25990 0.97463 0.97160 1.00468 1.69670 1.47798 1.10762 1.27729 0.84898 0.78160 0.77785 0.77662 1.19984 1.19599 1.19602 1.22020 1.00983 0.94797 0.98321 1.21062 0.79687 1.00152 0.95395 0.90259 1.22098 1.01741 1.01963 0.95512 0.93079 0.92793 0.89047 0.91756 0.91244 0.92266 0.92841 0.86342 0.85516 0.86610 0.89190 0.92281 0.89779 0.83819 0.87525 0.91547 0.76900 0.91309 0.90240 0.92425 0.90958 0.90746 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.43 -7.47 10.70 -148.98 -1.59 -9.06 16 3 C 0.06 0.76 5.94 71.98 0.43 1.19 16 4 C -0.10 -1.62 4.87 30.60 0.15 -1.47 16 5 C -0.13 -1.48 4.05 29.85 0.12 -1.36 16 6 C 0.51 10.18 7.70 87.66 0.67 10.86 16 7 O -0.59 -17.37 15.40 -3.05 -0.05 -17.42 16 8 N -0.60 -10.21 2.68 -794.95 -2.13 -12.34 16 9 C 0.11 1.20 5.93 86.36 0.51 1.71 16 10 C -0.12 -2.09 5.59 30.67 0.17 -1.92 16 11 C 0.09 1.83 2.25 44.94 0.10 1.93 16 12 H 0.06 1.12 6.16 -2.39 -0.01 1.11 16 13 N -0.68 -20.02 5.93 -495.47 -2.94 -22.96 16 14 C 0.07 2.16 5.96 85.56 0.51 2.67 16 15 C 0.44 20.21 7.82 87.66 0.69 20.89 16 16 O -0.63 -34.41 15.78 -3.07 -0.05 -34.45 16 17 N -0.57 -28.69 5.29 -306.98 -1.62 -30.31 16 18 C -0.33 -18.78 9.68 84.04 0.81 -17.97 16 19 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 20 C -0.01 -0.58 5.50 84.92 0.47 -0.11 16 21 N -0.92 -48.55 13.05 21.66 0.28 -48.27 16 22 Si 0.99 42.45 29.55 68.60 2.03 44.48 16 23 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 24 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 C -0.12 -2.49 4.84 30.69 0.15 -2.34 16 27 C 0.14 2.66 3.20 44.99 0.14 2.80 16 28 H 0.08 1.86 7.01 -2.39 -0.02 1.85 16 29 C -0.16 -2.30 9.03 71.98 0.65 -1.65 16 30 H 0.05 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.09 0.77 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 36 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 37 H 0.12 0.91 7.69 -2.39 -0.02 0.89 16 38 H 0.13 0.69 7.94 -2.38 -0.02 0.67 16 39 H 0.12 0.67 5.93 -2.38 -0.01 0.66 16 40 H 0.09 0.75 7.50 -2.39 -0.02 0.74 16 41 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.08 1.37 7.43 -2.39 -0.02 1.35 16 43 H 0.34 10.96 8.03 -89.70 -0.72 10.24 16 44 H 0.11 2.95 7.41 -2.39 -0.02 2.94 16 45 H 0.07 1.82 8.05 -2.39 -0.02 1.80 16 46 H 0.40 18.69 7.90 -92.71 -0.73 17.96 16 47 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 48 H 0.08 1.53 8.10 -2.39 -0.02 1.51 16 49 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.07 0.93 5.74 -2.39 -0.01 0.92 16 51 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 52 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -76.36 412.91 0.23 -76.13 By element: Atomic # 1 Polarization: 37.99 SS G_CDS: -0.53 Total: 37.46 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: 6.82 Total: 16.75 kcal Atomic # 7 Polarization: -107.48 SS G_CDS: -6.41 Total: -113.88 kcal Atomic # 8 Polarization: -59.25 SS G_CDS: -1.69 Total: -60.94 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -76.36 0.23 -76.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483899167.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.038 kcal (2) G-P(sol) polarization free energy of solvation -76.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds