Wall clock time and date at job start Wed Apr 1 2020 00:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47281 * 2 1 4 4 O 1.42905 * 109.47208 * 179.97438 * 3 2 1 5 5 C 1.42899 * 113.99804 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46896 * 180.02562 * 5 4 3 7 7 O 1.21278 * 120.00136 * 359.97438 * 6 5 4 8 8 N 1.34772 * 120.00043 * 180.02562 * 6 5 4 9 9 C 1.46934 * 120.60660 * 5.58276 * 8 6 5 10 10 C 1.53195 * 108.77341 * 233.58060 * 9 8 6 11 11 C 1.53043 * 109.33497 * 305.40997 * 10 9 8 12 12 C 1.53040 * 109.53762 * 61.34985 * 11 10 9 13 13 C 1.46933 * 120.63432 * 185.60059 * 8 6 5 14 14 H 1.08997 * 109.70564 * 246.24987 * 13 8 6 15 15 C 1.52998 * 109.58278 * 6.60611 * 13 8 6 16 16 N 1.46894 * 109.47241 * 177.97504 * 15 13 8 17 17 C 1.46904 * 111.00368 * 185.01611 * 16 15 13 18 18 C 1.50696 * 109.47272 * 180.02562 * 17 16 15 19 19 O 1.21297 * 120.00074 * 359.97438 * 18 17 16 20 20 N 1.34772 * 119.99853 * 180.02562 * 18 17 16 21 21 C 1.37101 * 120.00015 * 179.97438 * 20 18 17 22 22 H 1.08002 * 120.00117 * 359.97438 * 21 20 18 23 23 C 1.38956 * 120.00267 * 179.97438 * 21 20 18 24 24 N 1.31404 * 119.99872 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99470 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.46954 * 90.00422 * 25 23 21 27 27 H 1.48502 * 109.46839 * 209.99620 * 25 23 21 28 28 H 1.48493 * 109.47484 * 330.00072 * 25 23 21 29 29 H 1.08998 * 109.47084 * 300.00753 * 1 2 3 30 30 H 1.09005 * 109.46797 * 59.99980 * 1 2 3 31 31 H 1.08989 * 109.47058 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47394 * 239.99962 * 2 1 3 33 33 H 1.09002 * 109.47301 * 120.00017 * 2 1 3 34 34 H 1.09003 * 109.46959 * 60.00148 * 3 2 1 35 35 H 1.09005 * 109.47221 * 299.99760 * 3 2 1 36 36 H 1.09005 * 109.47283 * 60.00208 * 5 4 3 37 37 H 1.08991 * 109.47209 * 299.99955 * 5 4 3 38 38 H 1.09002 * 109.56421 * 113.80463 * 9 8 6 39 39 H 1.08998 * 109.61609 * 353.37767 * 9 8 6 40 40 H 1.08996 * 109.50085 * 185.44608 * 10 9 8 41 41 H 1.09001 * 109.49700 * 65.37428 * 10 9 8 42 42 H 1.08997 * 109.45954 * 181.36649 * 11 10 9 43 43 H 1.08999 * 109.46259 * 301.32665 * 11 10 9 44 44 H 1.09000 * 109.50001 * 58.58715 * 12 11 10 45 45 H 1.09007 * 109.49606 * 178.65156 * 12 11 10 46 46 H 1.09010 * 109.47019 * 297.97373 * 15 13 8 47 47 H 1.09002 * 109.47358 * 57.97333 * 15 13 8 48 48 H 1.00900 * 111.00016 * 61.06145 * 16 15 13 49 49 H 1.09001 * 109.46927 * 300.00104 * 17 16 15 50 50 H 1.08997 * 109.46697 * 59.99809 * 17 16 15 51 51 H 0.97000 * 120.00160 * 359.97438 * 20 18 17 52 52 H 0.97009 * 119.99885 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4425 0.0006 5 6 4.0503 2.7479 0.0012 6 6 5.5526 2.6289 0.0012 7 8 6.0741 1.5340 0.0012 8 7 6.3165 3.7392 0.0023 9 6 5.7037 5.0689 0.1265 10 6 6.1841 5.9437 -1.0357 11 6 7.7143 5.9562 -1.0616 12 6 8.2340 4.5335 -1.2809 13 6 7.7775 3.6429 -0.1211 14 1 8.2473 3.9777 0.8036 15 6 8.1739 2.1921 -0.4018 16 7 9.6303 2.1067 -0.5727 17 6 10.0362 0.7493 -0.9613 18 6 11.5333 0.7006 -1.1264 19 8 12.1969 1.6985 -0.9393 20 7 12.1347 -0.4516 -1.4829 21 6 13.4967 -0.4959 -1.6337 22 1 14.0876 0.3927 -1.4671 23 6 14.1169 -1.6839 -2.0007 24 7 15.4222 -1.7262 -2.1457 25 14 13.0947 -3.2206 -2.2895 26 1 12.6863 -3.2825 -3.7159 27 1 13.9006 -4.4216 -1.9528 28 1 11.8849 -3.1792 -1.4295 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 3.7283 3.2886 0.8913 37 1 3.7290 3.2891 -0.8886 38 1 6.0020 5.5214 1.0722 39 1 4.6182 4.9764 0.0897 40 1 5.8143 6.9604 -0.9029 41 1 5.8076 5.5394 -1.9753 42 1 8.0585 6.5975 -1.8729 43 1 8.0905 6.3380 -0.1126 44 1 7.8382 4.1420 -2.2180 45 1 9.3232 4.5466 -1.3233 46 1 7.8688 1.5637 0.4351 47 1 7.6806 1.8501 -1.3116 48 1 10.1106 2.4021 0.2640 49 1 9.7332 0.0440 -0.1874 50 1 9.5575 0.4827 -1.9035 51 1 11.6040 -1.2496 -1.6329 52 1 15.8553 -2.5557 -2.4016 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484614077.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:17 Heat of formation + Delta-G solvation = -104.031502 kcal Electronic energy + Delta-G solvation = -30203.975200 eV Core-core repulsion = 26011.075886 eV Total energy + Delta-G solvation = -4192.899314 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.84114 -38.58166 -38.27380 -37.33525 -35.49784 -34.09924 -33.81071 -33.16069 -31.78495 -31.49103 -28.83942 -27.64569 -26.20274 -25.24962 -24.56744 -23.31836 -22.01020 -21.72398 -21.15197 -19.47271 -19.13893 -18.24254 -17.53874 -16.95175 -16.86368 -16.20260 -15.86014 -15.43285 -15.31830 -14.93962 -14.84278 -14.72099 -14.51797 -14.32605 -13.88605 -13.73011 -13.59782 -13.33506 -13.08416 -13.04688 -12.53361 -12.52073 -12.49880 -12.38708 -12.30245 -11.98837 -11.78505 -11.56937 -11.35365 -11.31416 -11.19795 -11.15065 -11.03605 -10.86811 -10.68503 -10.51458 -10.11004 -9.90328 -9.53574 -9.48428 -8.83115 -8.44708 -8.10065 -7.82541 -6.24079 -3.74835 2.31991 2.38461 3.10739 3.14623 3.21507 3.35890 3.85272 4.13605 4.17642 4.32606 4.43705 4.50076 4.55423 4.56873 4.64973 4.68945 4.75777 4.84089 4.86807 4.97529 5.02449 5.02823 5.05580 5.10610 5.22782 5.27659 5.30280 5.35499 5.47852 5.56947 5.64947 5.66802 5.69568 5.79039 5.82327 5.86216 5.91294 5.98634 6.02578 6.07028 6.21397 6.33320 6.48533 6.67063 7.08903 7.28354 7.66636 7.74565 7.98976 8.22688 8.68393 9.02819 9.51029 9.92491 10.89150 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010043 B = 0.002386 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2787.212598 B =11730.772476 C =14279.939123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.060 3.940 4 O -0.363 6.363 5 C 0.045 3.955 6 C 0.513 3.487 7 O -0.507 6.507 8 N -0.608 5.608 9 C 0.107 3.893 10 C -0.136 4.136 11 C -0.123 4.123 12 C -0.122 4.122 13 C 0.153 3.847 14 H 0.073 0.927 15 C 0.064 3.936 16 N -0.675 5.675 17 C 0.055 3.945 18 C 0.453 3.547 19 O -0.566 6.566 20 N -0.593 5.593 21 C -0.303 4.303 22 H 0.119 0.881 23 C 0.040 3.960 24 N -0.884 5.884 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.269 1.269 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.095 0.905 46 H 0.061 0.939 47 H 0.076 0.924 48 H 0.345 0.655 49 H 0.044 0.956 50 H 0.085 0.915 51 H 0.371 0.629 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.221 12.860 4.874 35.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.016 4.016 4 O -0.281 6.281 5 C -0.035 4.035 6 C 0.300 3.700 7 O -0.380 6.380 8 N -0.345 5.345 9 C -0.016 4.016 10 C -0.174 4.174 11 C -0.161 4.161 12 C -0.160 4.160 13 C 0.051 3.949 14 H 0.091 0.909 15 C -0.065 4.065 16 N -0.309 5.309 17 C -0.078 4.078 18 C 0.238 3.762 19 O -0.448 6.448 20 N -0.232 5.232 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.163 4.163 24 N -0.524 5.524 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.203 1.203 28 H -0.194 1.194 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.113 0.887 46 H 0.079 0.921 47 H 0.095 0.905 48 H 0.164 0.836 49 H 0.062 0.938 50 H 0.103 0.897 51 H 0.203 0.797 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -31.213 12.858 4.306 34.032 hybrid contribution -1.024 -1.397 0.502 1.803 sum -32.237 11.461 4.808 34.550 Atomic orbital electron populations 1.21695 0.94647 1.02401 1.01920 1.21455 0.95597 0.95344 1.03827 1.22637 0.80472 0.98392 1.00122 1.88026 1.19552 1.25174 1.95378 1.22267 0.92168 0.86916 1.02134 1.20226 0.88423 0.84446 0.76939 1.90790 1.72962 1.26735 1.47554 1.48144 1.07192 1.05766 1.73410 1.21785 0.97708 0.82746 0.99329 1.21940 0.97274 0.99625 0.98588 1.21572 0.94464 0.97733 1.02296 1.21889 1.03029 0.93337 0.97734 1.21277 0.77632 0.97178 0.98833 0.90945 1.22546 0.87523 0.93636 1.02764 1.60026 1.05407 1.23927 1.41497 1.21597 0.95004 0.90099 1.01137 1.19781 0.88621 0.84147 0.83610 1.90546 1.65664 1.34237 1.54335 1.42218 1.08220 1.09839 1.62964 1.19432 0.80423 0.99462 1.43835 0.86320 1.25033 0.95675 0.97873 0.97672 1.69625 1.07963 1.27752 1.47048 0.86673 0.80191 0.83436 0.79139 1.19628 1.20251 1.19438 0.92556 0.92538 0.91882 0.90866 0.90907 0.93245 0.93204 0.90596 0.90448 0.90898 0.90129 0.90757 0.91437 0.91479 0.91780 0.91734 0.88675 0.92103 0.90539 0.83591 0.93762 0.89658 0.79664 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.35 16 2 C -0.12 -0.86 6.30 -26.73 -0.17 -1.03 16 3 C 0.06 0.43 5.94 37.16 0.22 0.65 16 4 O -0.36 -3.91 9.88 -55.14 -0.54 -4.46 16 5 C 0.05 0.37 4.77 36.01 0.17 0.54 16 6 C 0.51 5.92 7.60 -10.99 -0.08 5.84 16 7 O -0.51 -8.02 12.06 -14.35 -0.17 -8.19 16 8 N -0.61 -5.87 2.97 -165.21 -0.49 -6.36 16 9 C 0.11 0.63 6.35 -3.70 -0.02 0.60 16 10 C -0.14 -0.80 6.08 -26.61 -0.16 -0.96 16 11 C -0.12 -0.97 5.88 -26.69 -0.16 -1.13 16 12 C -0.12 -1.33 5.11 -26.61 -0.14 -1.47 16 13 C 0.15 1.77 3.19 -67.60 -0.22 1.56 16 14 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 15 C 0.06 0.94 3.56 -3.83 -0.01 0.93 16 16 N -0.67 -11.42 5.40 -115.06 -0.62 -12.04 16 17 C 0.05 1.02 6.16 -4.98 -0.03 0.99 16 18 C 0.45 10.86 7.82 -10.99 -0.09 10.78 16 19 O -0.57 -15.66 15.78 5.54 0.09 -15.57 16 20 N -0.59 -14.89 5.09 -10.96 -0.06 -14.94 16 21 C -0.30 -8.87 10.16 -14.93 -0.15 -9.02 16 22 H 0.12 3.94 7.39 -52.49 -0.39 3.55 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -26.49 13.96 55.50 0.77 -25.72 16 25 Si 0.88 20.24 27.74 -169.99 -4.71 15.53 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 28 H -0.27 -5.73 6.52 56.52 0.37 -5.36 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.28 8.14 -51.94 -0.42 -0.14 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.08 0.42 7.71 -51.93 -0.40 0.02 16 37 H 0.08 0.46 7.92 -51.93 -0.41 0.05 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.29 5.93 -51.93 -0.31 -0.02 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.09 1.24 7.77 -51.93 -0.40 0.83 16 46 H 0.06 0.99 6.25 -51.92 -0.32 0.67 16 47 H 0.08 1.24 7.22 -51.93 -0.37 0.87 16 48 H 0.35 5.92 8.48 -39.29 -0.33 5.59 16 49 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 51 H 0.37 8.31 5.76 -40.82 -0.24 8.07 16 52 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 410.95 15.07 6.19 6.19 Total: -1.00 -35.95 410.95 -9.22 -45.17 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -9.11 Total: 11.44 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: -0.56 Total: 8.95 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: -0.39 Total: -59.06 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.63 Total: -28.22 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.71 Total: 15.53 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.95 -9.22 -45.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484614077.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.862 kcal (2) G-P(sol) polarization free energy of solvation -35.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds