Wall clock time and date at job start Wed Apr 1 2020 00:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47281 * 2 1 4 4 O 1.42905 * 109.47208 * 179.97438 * 3 2 1 5 5 C 1.42899 * 113.99804 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46896 * 180.02562 * 5 4 3 7 7 O 1.21278 * 120.00136 * 359.97438 * 6 5 4 8 8 N 1.34772 * 120.00043 * 180.02562 * 6 5 4 9 9 C 1.46934 * 120.60660 * 5.58276 * 8 6 5 10 10 C 1.53195 * 108.77341 * 233.58060 * 9 8 6 11 11 C 1.53043 * 109.33497 * 305.40997 * 10 9 8 12 12 C 1.53040 * 109.53762 * 61.34985 * 11 10 9 13 13 C 1.46933 * 120.63432 * 185.60059 * 8 6 5 14 14 H 1.08997 * 109.70564 * 246.24987 * 13 8 6 15 15 C 1.52998 * 109.58278 * 6.60611 * 13 8 6 16 16 N 1.46894 * 109.47241 * 177.97504 * 15 13 8 17 17 C 1.46904 * 111.00368 * 185.01611 * 16 15 13 18 18 C 1.50696 * 109.47272 * 180.02562 * 17 16 15 19 19 O 1.21297 * 120.00074 * 359.97438 * 18 17 16 20 20 N 1.34772 * 119.99853 * 180.02562 * 18 17 16 21 21 C 1.37101 * 120.00015 * 179.97438 * 20 18 17 22 22 H 1.08002 * 120.00117 * 359.97438 * 21 20 18 23 23 C 1.38956 * 120.00267 * 179.97438 * 21 20 18 24 24 N 1.31404 * 119.99872 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99470 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.46954 * 90.00422 * 25 23 21 27 27 H 1.48502 * 109.46839 * 209.99620 * 25 23 21 28 28 H 1.48493 * 109.47484 * 330.00072 * 25 23 21 29 29 H 1.08998 * 109.47084 * 300.00753 * 1 2 3 30 30 H 1.09005 * 109.46797 * 59.99980 * 1 2 3 31 31 H 1.08989 * 109.47058 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47394 * 239.99962 * 2 1 3 33 33 H 1.09002 * 109.47301 * 120.00017 * 2 1 3 34 34 H 1.09003 * 109.46959 * 60.00148 * 3 2 1 35 35 H 1.09005 * 109.47221 * 299.99760 * 3 2 1 36 36 H 1.09005 * 109.47283 * 60.00208 * 5 4 3 37 37 H 1.08991 * 109.47209 * 299.99955 * 5 4 3 38 38 H 1.09002 * 109.56421 * 113.80463 * 9 8 6 39 39 H 1.08998 * 109.61609 * 353.37767 * 9 8 6 40 40 H 1.08996 * 109.50085 * 185.44608 * 10 9 8 41 41 H 1.09001 * 109.49700 * 65.37428 * 10 9 8 42 42 H 1.08997 * 109.45954 * 181.36649 * 11 10 9 43 43 H 1.08999 * 109.46259 * 301.32665 * 11 10 9 44 44 H 1.09000 * 109.50001 * 58.58715 * 12 11 10 45 45 H 1.09007 * 109.49606 * 178.65156 * 12 11 10 46 46 H 1.09010 * 109.47019 * 297.97373 * 15 13 8 47 47 H 1.09002 * 109.47358 * 57.97333 * 15 13 8 48 48 H 1.00900 * 111.00016 * 61.06145 * 16 15 13 49 49 H 1.09001 * 109.46927 * 300.00104 * 17 16 15 50 50 H 1.08997 * 109.46697 * 59.99809 * 17 16 15 51 51 H 0.97000 * 120.00160 * 359.97438 * 20 18 17 52 52 H 0.97009 * 119.99885 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4425 0.0006 5 6 4.0503 2.7479 0.0012 6 6 5.5526 2.6289 0.0012 7 8 6.0741 1.5340 0.0012 8 7 6.3165 3.7392 0.0023 9 6 5.7037 5.0689 0.1265 10 6 6.1841 5.9437 -1.0357 11 6 7.7143 5.9562 -1.0616 12 6 8.2340 4.5335 -1.2809 13 6 7.7775 3.6429 -0.1211 14 1 8.2473 3.9777 0.8036 15 6 8.1739 2.1921 -0.4018 16 7 9.6303 2.1067 -0.5727 17 6 10.0362 0.7493 -0.9613 18 6 11.5333 0.7006 -1.1264 19 8 12.1969 1.6985 -0.9393 20 7 12.1347 -0.4516 -1.4829 21 6 13.4967 -0.4959 -1.6337 22 1 14.0876 0.3927 -1.4671 23 6 14.1169 -1.6839 -2.0007 24 7 15.4222 -1.7262 -2.1457 25 14 13.0947 -3.2206 -2.2895 26 1 12.6863 -3.2825 -3.7159 27 1 13.9006 -4.4216 -1.9528 28 1 11.8849 -3.1792 -1.4295 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 3.7283 3.2886 0.8913 37 1 3.7290 3.2891 -0.8886 38 1 6.0020 5.5214 1.0722 39 1 4.6182 4.9764 0.0897 40 1 5.8143 6.9604 -0.9029 41 1 5.8076 5.5394 -1.9753 42 1 8.0585 6.5975 -1.8729 43 1 8.0905 6.3380 -0.1126 44 1 7.8382 4.1420 -2.2180 45 1 9.3232 4.5466 -1.3233 46 1 7.8688 1.5637 0.4351 47 1 7.6806 1.8501 -1.3116 48 1 10.1106 2.4021 0.2640 49 1 9.7332 0.0440 -0.1874 50 1 9.5575 0.4827 -1.9035 51 1 11.6040 -1.2496 -1.6329 52 1 15.8553 -2.5557 -2.4016 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484614077.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:16 Heat of formation + Delta-G solvation = -130.915761 kcal Electronic energy + Delta-G solvation = -30205.140989 eV Core-core repulsion = 26011.075886 eV Total energy + Delta-G solvation = -4194.065103 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.66956 -40.30651 -39.17618 -38.12884 -36.84384 -35.90251 -34.60511 -33.91799 -33.77514 -32.66423 -29.47226 -29.04778 -27.03366 -26.42448 -25.46051 -24.77709 -22.71290 -22.50676 -21.84516 -21.33988 -20.42606 -19.92175 -18.43905 -17.76115 -17.55933 -17.39150 -17.18951 -16.76662 -16.54625 -16.18409 -15.83194 -15.61304 -15.41834 -15.28218 -15.06044 -14.91605 -14.60264 -14.46745 -14.39554 -14.21222 -13.98095 -13.76595 -13.39599 -13.14799 -13.04401 -12.98740 -12.90218 -12.84117 -12.65792 -12.43883 -12.01883 -11.99893 -11.91226 -11.82288 -11.78910 -11.59655 -11.54321 -11.41572 -10.66432 -10.55115 -10.41057 -10.27008 -9.63454 -9.17375 -8.43652 -6.04056 1.28878 1.32739 1.41615 1.52508 1.65630 1.90962 2.20323 2.62391 2.88338 3.12081 3.41166 3.57370 3.78217 3.88163 4.00069 4.03691 4.07568 4.11872 4.12473 4.20241 4.26573 4.28502 4.29511 4.40473 4.42156 4.49631 4.55213 4.58067 4.65277 4.69388 4.75488 4.84326 4.89884 4.99937 5.02671 5.13086 5.17086 5.23203 5.24895 5.29296 5.35385 5.48734 5.50195 5.60344 5.85556 5.96699 6.12562 6.34983 6.42280 6.56950 6.84618 7.16733 7.36268 7.91487 8.73748 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010043 B = 0.002386 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2787.212598 B =11730.772476 C =14279.939123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.057 3.943 4 O -0.403 6.403 5 C 0.049 3.951 6 C 0.502 3.498 7 O -0.561 6.561 8 N -0.603 5.603 9 C 0.100 3.900 10 C -0.130 4.130 11 C -0.121 4.121 12 C -0.116 4.116 13 C 0.156 3.844 14 H 0.077 0.923 15 C 0.079 3.921 16 N -0.681 5.681 17 C 0.068 3.932 18 C 0.453 3.547 19 O -0.608 6.608 20 N -0.591 5.591 21 C -0.328 4.328 22 H 0.059 0.941 23 C -0.013 4.013 24 N -0.931 5.931 25 Si 0.962 3.038 26 H -0.257 1.257 27 H -0.271 1.271 28 H -0.238 1.238 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.113 0.887 40 H 0.102 0.898 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.050 0.950 45 H 0.067 0.933 46 H 0.047 0.953 47 H 0.060 0.940 48 H 0.343 0.657 49 H 0.065 0.935 50 H 0.103 0.897 51 H 0.388 0.612 52 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.551 13.285 5.118 39.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C -0.018 4.018 4 O -0.322 6.322 5 C -0.031 4.031 6 C 0.291 3.709 7 O -0.439 6.439 8 N -0.339 5.339 9 C -0.021 4.021 10 C -0.168 4.168 11 C -0.159 4.159 12 C -0.154 4.154 13 C 0.052 3.948 14 H 0.095 0.905 15 C -0.049 4.049 16 N -0.315 5.315 17 C -0.065 4.065 18 C 0.240 3.760 19 O -0.493 6.493 20 N -0.233 5.233 21 C -0.457 4.457 22 H 0.077 0.923 23 C -0.212 4.212 24 N -0.571 5.571 25 Si 0.782 3.218 26 H -0.181 1.181 27 H -0.196 1.196 28 H -0.161 1.161 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.106 0.894 39 H 0.131 0.869 40 H 0.121 0.879 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.086 0.914 46 H 0.065 0.935 47 H 0.079 0.921 48 H 0.161 0.839 49 H 0.083 0.917 50 H 0.121 0.879 51 H 0.224 0.776 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -35.591 13.337 4.556 38.279 hybrid contribution 0.392 -1.401 0.441 1.520 sum -35.198 11.936 4.997 37.501 Atomic orbital electron populations 1.21662 0.92884 1.02785 1.02800 1.21491 0.97114 0.95552 1.02415 1.22802 0.78845 0.98423 1.01764 1.87983 1.21534 1.26927 1.95752 1.22386 0.89218 0.86578 1.04875 1.20992 0.90164 0.83921 0.75840 1.90757 1.74173 1.28753 1.50230 1.48230 1.06070 1.07199 1.72355 1.22153 0.99415 0.80494 0.99993 1.21924 0.95201 1.01246 0.98451 1.21564 0.96387 0.95203 1.02702 1.21772 1.01301 0.95529 0.96815 1.21107 0.79502 0.94999 0.99152 0.90541 1.22392 0.85403 0.95769 1.01332 1.60052 1.06953 1.22942 1.41554 1.21484 0.90517 0.91696 1.02788 1.20793 0.90782 0.83024 0.81381 1.90523 1.67379 1.35755 1.55616 1.42049 1.06756 1.11038 1.63455 1.19026 0.82182 0.98312 1.46212 0.92330 1.26067 0.97086 1.01827 0.96210 1.69792 1.10407 1.29433 1.47514 0.85398 0.79090 0.77129 0.80146 1.18123 1.19592 1.16140 0.91577 0.91683 0.91824 0.92401 0.92277 0.91374 0.91564 0.87340 0.87681 0.89440 0.86915 0.87914 0.91847 0.91289 0.91142 0.93128 0.91424 0.93486 0.92103 0.83891 0.91732 0.87882 0.77650 0.91063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.91 71.98 0.71 -0.41 16 2 C -0.13 -1.66 6.30 30.59 0.19 -1.47 16 3 C 0.06 0.68 5.94 71.98 0.43 1.11 16 4 O -0.40 -8.04 9.88 -129.94 -1.28 -9.32 16 5 C 0.05 0.65 4.77 71.24 0.34 0.99 16 6 C 0.50 10.90 7.60 87.66 0.67 11.56 16 7 O -0.56 -17.88 12.06 16.01 0.19 -17.69 16 8 N -0.60 -10.50 2.97 -795.00 -2.36 -12.87 16 9 C 0.10 0.79 6.35 86.36 0.55 1.34 16 10 C -0.13 -1.08 6.08 30.67 0.19 -0.89 16 11 C -0.12 -1.70 5.88 30.62 0.18 -1.52 16 12 C -0.12 -2.53 5.11 30.67 0.16 -2.38 16 13 C 0.16 3.54 3.19 44.97 0.14 3.68 16 14 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 15 C 0.08 2.36 3.56 86.30 0.31 2.67 16 16 N -0.68 -23.52 5.40 -517.93 -2.80 -26.32 16 17 C 0.07 2.52 6.16 85.55 0.53 3.04 16 18 C 0.45 22.21 7.82 87.66 0.69 22.90 16 19 O -0.61 -35.30 15.78 -3.08 -0.05 -35.35 16 20 N -0.59 -30.03 5.09 -306.98 -1.56 -31.59 16 21 C -0.33 -20.04 10.16 84.04 0.85 -19.19 16 22 H 0.06 4.20 7.39 -2.91 -0.02 4.18 16 23 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 24 N -0.93 -57.50 13.96 21.66 0.30 -57.20 16 25 Si 0.96 41.08 27.74 68.60 1.90 42.98 16 26 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 27 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 28 H -0.24 -8.89 6.52 99.48 0.65 -8.25 16 29 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 36 H 0.11 0.72 7.71 -2.38 -0.02 0.71 16 37 H 0.11 0.81 7.92 -2.39 -0.02 0.79 16 38 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.11 0.21 5.93 -2.39 -0.01 0.20 16 40 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 43 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.07 1.84 7.77 -2.38 -0.02 1.82 16 46 H 0.05 1.57 6.25 -2.38 -0.01 1.55 16 47 H 0.06 2.01 7.22 -2.39 -0.02 2.00 16 48 H 0.34 12.13 8.48 -89.69 -0.76 11.37 16 49 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 50 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 51 H 0.39 16.80 5.76 -92.71 -0.53 16.26 16 52 H 0.28 15.76 8.31 -92.70 -0.77 14.99 16 Total: -1.00 -85.40 410.95 0.30 -85.10 By element: Atomic # 1 Polarization: 41.54 SS G_CDS: -0.44 Total: 41.10 kcal Atomic # 6 Polarization: 14.76 SS G_CDS: 6.40 Total: 21.16 kcal Atomic # 7 Polarization: -121.56 SS G_CDS: -6.42 Total: -127.98 kcal Atomic # 8 Polarization: -61.22 SS G_CDS: -1.14 Total: -62.35 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 1.90 Total: 42.98 kcal Total: -85.40 0.30 -85.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484614077.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.820 kcal (2) G-P(sol) polarization free energy of solvation -85.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds