Wall clock time and date at job start Wed Apr 1 2020 00:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47325 * 2 1 4 4 O 1.42902 * 109.47019 * 120.00050 * 2 1 3 5 5 C 1.42892 * 114.00314 * 90.00120 * 4 2 1 6 6 C 1.50697 * 109.47476 * 180.02562 * 5 4 2 7 7 O 1.21284 * 119.99824 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00238 * 179.97438 * 6 5 4 9 9 C 1.46931 * 120.62946 * 179.97438 * 8 6 5 10 10 C 1.53190 * 108.77468 * 233.58385 * 9 8 6 11 11 C 1.53042 * 109.31284 * 305.36751 * 10 9 8 12 12 C 1.52996 * 109.45958 * 301.35558 * 11 10 9 13 13 N 1.46904 * 109.45951 * 181.38715 * 11 10 9 14 14 C 1.46899 * 111.00029 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47107 * 179.97438 * 14 13 11 16 16 O 1.21286 * 120.00016 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00161 * 180.02562 * 15 14 13 18 18 C 1.37091 * 120.00108 * 180.02562 * 17 15 14 19 19 H 1.07995 * 120.00333 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99712 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00268 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99720 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47394 * 89.99754 * 22 20 18 24 24 H 1.48508 * 109.46868 * 210.00078 * 22 20 18 25 25 H 1.48507 * 109.47197 * 329.99774 * 22 20 18 26 26 C 1.53036 * 109.52913 * 61.37242 * 11 10 9 27 27 C 1.46922 * 120.63247 * 359.97225 * 8 6 5 28 28 H 1.08998 * 109.46921 * 300.00298 * 1 2 3 29 29 H 1.09003 * 109.46993 * 60.00173 * 1 2 3 30 30 H 1.08999 * 109.47058 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47291 * 240.00088 * 2 1 3 32 32 H 1.09000 * 109.47458 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.46944 * 299.99857 * 3 2 1 34 34 H 1.08995 * 109.47467 * 59.99460 * 3 2 1 35 35 H 1.08999 * 109.47213 * 59.99989 * 5 4 2 36 36 H 1.09000 * 109.47074 * 300.00031 * 5 4 2 37 37 H 1.09004 * 109.58740 * 113.80153 * 9 8 6 38 38 H 1.08992 * 109.70422 * 353.44374 * 9 8 6 39 39 H 1.09004 * 109.49944 * 185.41455 * 10 9 8 40 40 H 1.09005 * 109.52663 * 65.33023 * 10 9 8 41 41 H 1.09001 * 109.47165 * 300.02841 * 12 11 10 42 42 H 1.08995 * 109.47323 * 60.02794 * 12 11 10 43 43 H 1.09004 * 109.47010 * 180.02562 * 12 11 10 44 44 H 1.00902 * 111.00190 * 56.00997 * 13 11 10 45 45 H 1.09002 * 109.47043 * 299.99792 * 14 13 11 46 46 H 1.09001 * 109.47354 * 59.99854 * 14 13 11 47 47 H 0.97005 * 119.99463 * 359.97438 * 17 15 14 48 48 H 0.96996 * 119.99832 * 179.97438 * 21 20 18 49 49 H 1.09000 * 109.49835 * 58.58078 * 26 11 10 50 50 H 1.09002 * 109.49904 * 178.67607 * 26 11 10 51 51 H 1.08998 * 109.58884 * 246.20188 * 27 8 6 52 52 H 1.09003 * 109.58454 * 6.48978 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2001 -2.0781 0.9887 6 6 2.7002 -2.6834 2.2750 7 8 2.8741 -1.9810 3.2483 8 7 2.9542 -4.0052 2.3438 9 6 3.4428 -4.6096 3.5907 10 6 4.7263 -5.3901 3.2904 11 6 4.4567 -6.3951 2.1681 12 6 3.3345 -7.3444 2.5927 13 7 5.6767 -7.1684 1.9002 14 6 5.4551 -8.1460 0.8263 15 6 6.7256 -8.9181 0.5799 16 8 7.7182 -8.6773 1.2340 17 7 6.7593 -9.8754 -0.3682 18 6 7.9150 -10.5781 -0.5921 19 1 8.7985 -10.3643 -0.0091 20 6 7.9494 -11.5655 -1.5692 21 7 6.8745 -11.8253 -2.2790 22 14 9.5239 -12.5235 -1.8737 23 1 9.5455 -13.7289 -1.0068 24 1 9.5837 -12.9374 -3.2987 25 1 10.6943 -11.6656 -1.5579 26 6 4.0390 -5.6464 0.9004 27 6 2.7479 -4.8690 1.1734 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 2.9319 -2.2467 0.1988 36 1 1.2538 -2.5433 0.7125 37 1 2.6876 -5.2876 3.9885 38 1 3.6528 -3.8278 4.3204 39 1 5.0465 -5.9223 4.1862 40 1 5.5090 -4.6983 2.9789 41 1 3.6321 -7.8781 3.4953 42 1 2.4292 -6.7709 2.7915 43 1 3.1427 -8.0606 1.7936 44 1 6.0093 -7.6210 2.7384 45 1 4.6623 -8.8343 1.1195 46 1 5.1646 -7.6244 -0.0856 47 1 5.9656 -10.0677 -0.8916 48 1 6.8987 -12.5143 -2.9613 49 1 4.8277 -4.9518 0.6115 50 1 3.8699 -6.3610 0.0949 51 1 1.9360 -5.5681 1.3738 52 1 2.4976 -4.2568 0.3070 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484912234.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:54 Heat of formation + Delta-G solvation = -140.016022 kcal Electronic energy + Delta-G solvation = -30375.571503 eV Core-core repulsion = 26181.111783 eV Total energy + Delta-G solvation = -4194.459720 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.61535 -40.34239 -39.57794 -38.76422 -36.46049 -35.84203 -33.81838 -33.30694 -32.83972 -32.01294 -29.43902 -28.33358 -28.17440 -27.90084 -26.11678 -24.75426 -23.93802 -22.25590 -21.27543 -20.91061 -19.88612 -19.19361 -18.50872 -17.89543 -17.66044 -17.08775 -16.92026 -16.67116 -16.37438 -16.06740 -15.87289 -15.62192 -15.55754 -15.43079 -14.96111 -14.81390 -14.58195 -14.34537 -13.92600 -13.76821 -13.54432 -13.50545 -13.35567 -13.20078 -13.04901 -12.94918 -12.87122 -12.85679 -12.72036 -12.42272 -12.36915 -12.31278 -12.12934 -12.11326 -11.68903 -11.63799 -11.49609 -11.29235 -10.76839 -10.63902 -10.32631 -10.00058 -9.72253 -9.23844 -8.46062 -5.94209 1.38037 1.42160 1.51124 1.54421 1.70400 2.07302 2.29548 2.82601 2.91619 3.21391 3.46541 3.51939 3.70053 3.83091 4.01536 4.07369 4.07901 4.12073 4.15916 4.25947 4.29865 4.30913 4.31668 4.35892 4.47530 4.56959 4.57873 4.63883 4.69306 4.76414 4.78927 4.83887 4.91168 4.92638 4.94704 4.95031 5.00989 5.16682 5.25946 5.29695 5.34247 5.41899 5.45350 5.49368 5.93452 6.14764 6.17477 6.37186 6.44116 6.61935 7.10711 7.14216 7.58250 8.14258 8.71147 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017859 B = 0.001928 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.459519 B =14518.557853 C =15328.309903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.071 3.929 3 C -0.151 4.151 4 O -0.394 6.394 5 C 0.045 3.955 6 C 0.510 3.490 7 O -0.577 6.577 8 N -0.605 5.605 9 C 0.118 3.882 10 C -0.114 4.114 11 C 0.115 3.885 12 C -0.184 4.184 13 N -0.675 5.675 14 C 0.065 3.935 15 C 0.436 3.564 16 O -0.626 6.626 17 N -0.573 5.573 18 C -0.334 4.334 19 H 0.076 0.924 20 C -0.012 4.012 21 N -0.918 5.918 22 Si 0.990 3.010 23 H -0.271 1.271 24 H -0.270 1.270 25 H -0.275 1.275 26 C -0.125 4.125 27 C 0.106 3.894 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.093 0.907 34 H 0.052 0.948 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.083 0.917 43 H 0.064 0.936 44 H 0.342 0.658 45 H 0.071 0.929 46 H 0.107 0.893 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.060 0.940 50 H 0.090 0.910 51 H 0.098 0.902 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.844 17.398 1.554 25.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 C -0.208 4.208 4 O -0.314 6.314 5 C -0.034 4.034 6 C 0.298 3.702 7 O -0.456 6.456 8 N -0.339 5.339 9 C -0.004 4.004 10 C -0.152 4.152 11 C 0.024 3.976 12 C -0.243 4.243 13 N -0.306 5.306 14 C -0.067 4.067 15 C 0.223 3.777 16 O -0.513 6.513 17 N -0.210 5.210 18 C -0.463 4.463 19 H 0.094 0.906 20 C -0.212 4.212 21 N -0.559 5.559 22 Si 0.814 3.186 23 H -0.197 1.197 24 H -0.195 1.195 25 H -0.200 1.200 26 C -0.164 4.164 27 C -0.016 4.016 28 H 0.070 0.930 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.071 0.929 35 H 0.119 0.881 36 H 0.126 0.874 37 H 0.109 0.891 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.102 0.898 43 H 0.083 0.917 44 H 0.161 0.839 45 H 0.088 0.912 46 H 0.125 0.875 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.079 0.921 50 H 0.109 0.891 51 H 0.117 0.883 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -17.822 18.363 2.083 25.674 hybrid contribution 0.270 -1.538 0.004 1.562 sum -17.552 16.824 2.088 24.402 Atomic orbital electron populations 1.22294 0.94868 1.02871 1.02994 1.22417 0.94575 0.94073 0.87531 1.21894 1.01463 0.94353 1.03096 1.88032 1.87107 1.18873 1.37340 1.22414 1.02970 0.83479 0.94510 1.20874 0.77199 0.81874 0.90203 1.90693 1.53841 1.61264 1.39790 1.48152 1.65182 1.06686 1.13858 1.21597 0.95626 0.97049 0.86168 1.21832 0.97286 0.97509 0.98608 1.20961 0.88100 0.93084 0.95422 1.22649 0.99722 1.00039 1.01868 1.60243 1.31059 1.28103 1.11217 1.21589 0.93194 0.94146 0.97768 1.21014 0.91374 0.82780 0.82485 1.90496 1.38627 1.70079 1.52087 1.41914 1.13230 1.32531 1.33335 1.19635 0.91821 1.15933 1.18958 0.90567 1.25991 1.01697 0.98059 0.95421 1.69656 1.29511 1.33408 1.23326 0.84967 0.77584 0.78149 0.77870 1.19664 1.19481 1.20024 1.22019 0.97614 0.99539 0.97199 1.22093 0.97653 0.94088 0.87724 0.93037 0.89641 0.91879 0.90007 0.92755 0.88845 0.92906 0.88055 0.87367 0.89072 0.90661 0.90155 0.92778 0.92679 0.89849 0.91693 0.83854 0.91158 0.87503 0.76898 0.91301 0.92118 0.89124 0.88348 0.87099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 9.53 71.98 0.69 -1.07 16 2 C 0.07 0.92 3.34 30.59 0.10 1.02 16 3 C -0.15 -1.89 9.56 71.98 0.69 -1.20 16 4 O -0.39 -8.17 9.52 -129.94 -1.24 -9.41 16 5 C 0.05 0.69 4.57 71.23 0.33 1.02 16 6 C 0.51 11.44 7.77 87.66 0.68 12.12 16 7 O -0.58 -18.88 15.92 15.99 0.25 -18.63 16 8 N -0.60 -10.61 2.97 -818.99 -2.43 -13.04 16 9 C 0.12 2.21 5.96 86.36 0.51 2.72 16 10 C -0.11 -2.35 5.16 30.67 0.16 -2.19 16 11 C 0.11 2.33 0.71 3.55 0.00 2.33 16 12 C -0.18 -2.97 7.47 71.98 0.54 -2.43 16 13 N -0.67 -19.81 5.71 -474.01 -2.71 -22.52 16 14 C 0.07 2.05 5.38 85.56 0.46 2.51 16 15 C 0.44 20.17 7.82 87.66 0.69 20.86 16 16 O -0.63 -34.49 15.78 -3.05 -0.05 -34.54 16 17 N -0.57 -28.65 5.29 -306.99 -1.62 -30.28 16 18 C -0.33 -18.76 9.68 84.04 0.81 -17.95 16 19 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 20 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 21 N -0.92 -48.45 13.05 21.66 0.28 -48.17 16 22 Si 0.99 42.50 29.55 68.60 2.03 44.53 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 24 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 25 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 26 C -0.13 -2.12 4.71 30.66 0.14 -1.98 16 27 C 0.11 1.21 5.87 86.35 0.51 1.71 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.55 7.87 -2.39 -0.02 0.53 16 31 H 0.08 0.72 7.79 -2.39 -0.02 0.70 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.09 0.70 8.14 -2.39 -0.02 0.69 16 34 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.10 1.09 7.64 -2.39 -0.02 1.08 16 36 H 0.11 0.95 7.67 -2.39 -0.02 0.93 16 37 H 0.09 1.33 6.69 -2.39 -0.02 1.32 16 38 H 0.07 1.73 7.01 -2.39 -0.02 1.71 16 39 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 41 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.08 1.01 4.98 -2.39 -0.01 1.00 16 43 H 0.06 1.06 6.40 -2.38 -0.02 1.04 16 44 H 0.34 10.93 8.42 -89.69 -0.76 10.17 16 45 H 0.07 1.92 6.30 -2.39 -0.02 1.90 16 46 H 0.11 2.97 6.27 -2.39 -0.01 2.95 16 47 H 0.40 18.63 7.90 -92.70 -0.73 17.89 16 48 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 49 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.09 1.40 6.33 -2.39 -0.02 1.39 16 51 H 0.10 0.77 6.69 -2.39 -0.02 0.75 16 52 H 0.11 0.69 5.93 -2.39 -0.01 0.68 16 Total: -1.00 -77.55 404.80 0.75 -76.80 By element: Atomic # 1 Polarization: 38.48 SS G_CDS: -0.54 Total: 37.94 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 6.77 Total: 17.32 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -6.48 Total: -114.01 kcal Atomic # 8 Polarization: -61.55 SS G_CDS: -1.03 Total: -62.58 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -77.55 0.75 -76.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484912234.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.217 kcal (2) G-P(sol) polarization free energy of solvation -77.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds