Wall clock time and date at job start Wed Apr 1 2020 01:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.87434 * 2 1 4 4 C 1.54319 * 110.01502 * 238.89733 * 2 1 3 5 5 H 1.09007 * 110.72165 * 336.85651 * 4 2 1 6 6 N 1.46895 * 110.72154 * 99.95614 * 4 2 1 7 7 C 1.46904 * 110.99960 * 205.00294 * 6 4 2 8 8 C 1.50701 * 109.47127 * 180.02562 * 7 6 4 9 9 O 1.21294 * 119.99852 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00205 * 180.02562 * 8 7 6 11 11 C 1.37096 * 120.00175 * 179.97438 * 10 8 7 12 12 H 1.07993 * 120.00005 * 359.97438 * 11 10 8 13 13 C 1.38949 * 120.00152 * 179.97438 * 11 10 8 14 14 N 1.31410 * 120.00230 * 180.02562 * 13 11 10 15 15 Si 1.86806 * 119.99768 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.46958 * 90.00106 * 15 13 11 17 17 H 1.48498 * 109.46848 * 209.99973 * 15 13 11 18 18 H 1.48504 * 109.47120 * 330.00103 * 15 13 11 19 19 C 1.55160 * 102.94525 * 218.31999 * 4 2 1 20 20 C 1.54690 * 101.67355 * 35.33465 * 19 4 2 21 21 N 1.47024 * 109.88172 * 121.01069 * 2 1 3 22 22 C 1.34775 * 125.64599 * 298.48092 * 21 2 1 23 23 O 1.21279 * 120.00300 * 359.97438 * 22 21 2 24 24 C 1.50703 * 119.99773 * 179.97438 * 22 21 2 25 25 O 1.42905 * 109.47264 * 179.97438 * 24 22 21 26 26 C 1.42901 * 114.00134 * 179.97438 * 25 24 22 27 27 C 1.53003 * 109.46730 * 60.00260 * 26 25 24 28 28 C 1.52996 * 109.47091 * 179.97438 * 26 25 24 29 29 C 1.52997 * 109.47061 * 300.00278 * 26 25 24 30 30 H 1.08998 * 109.47567 * 300.44207 * 1 2 3 31 31 H 1.09003 * 109.47068 * 60.44507 * 1 2 3 32 32 H 1.09005 * 109.47190 * 180.43666 * 1 2 3 33 33 H 1.00903 * 111.00094 * 328.95557 * 6 4 2 34 34 H 1.09003 * 109.47093 * 299.99700 * 7 6 4 35 35 H 1.08996 * 109.47167 * 59.99514 * 7 6 4 36 36 H 0.97000 * 119.99596 * 359.97438 * 10 8 7 37 37 H 0.96996 * 119.99655 * 180.02562 * 14 13 11 38 38 H 1.08996 * 111.00451 * 153.57184 * 19 4 2 39 39 H 1.08998 * 111.00266 * 277.38913 * 19 4 2 40 40 H 1.09004 * 110.39050 * 204.36887 * 20 19 4 41 41 H 1.08994 * 110.23969 * 82.11794 * 20 19 4 42 42 H 1.09001 * 109.47438 * 59.99564 * 24 22 21 43 43 H 1.09004 * 109.47113 * 299.99819 * 24 22 21 44 44 H 1.08994 * 109.47484 * 60.00123 * 27 26 25 45 45 H 1.09004 * 109.46784 * 179.97438 * 27 26 25 46 46 H 1.09004 * 109.47235 * 299.99514 * 27 26 25 47 47 H 1.09003 * 109.47090 * 59.99900 * 28 26 25 48 48 H 1.08996 * 109.47307 * 180.02562 * 28 26 25 49 49 H 1.09002 * 109.47184 * 300.00269 * 28 26 25 50 50 H 1.08994 * 109.47529 * 60.00146 * 29 26 25 51 51 H 1.09004 * 109.46975 * 179.97438 * 29 26 25 52 52 H 1.09002 * 109.47295 * 299.99669 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0581 -0.7490 -1.2415 5 1 1.3093 -1.4451 -1.6196 6 7 2.4592 0.1994 -2.2891 7 6 2.3930 -0.4244 -3.6175 8 6 2.8111 0.5763 -4.6638 9 8 3.1322 1.6989 -4.3354 10 7 2.8272 0.2242 -5.9647 11 6 3.2071 1.1347 -6.9167 12 1 3.4929 2.1342 -6.6242 13 6 3.2242 0.7716 -8.2577 14 7 3.5888 1.6442 -9.1702 15 14 2.7304 -0.9576 -8.7635 16 1 1.2697 -0.9978 -9.0277 17 1 3.4668 -1.3426 -9.9942 18 1 3.0621 -1.9067 -7.6707 19 6 3.2918 -1.5108 -0.6892 20 6 2.8221 -1.8731 0.7395 21 7 2.0300 -0.7123 1.1850 22 6 1.8059 -0.3593 2.4662 23 8 1.1408 0.6233 2.7171 24 6 2.3820 -1.1855 3.5872 25 8 2.0086 -0.6124 4.8420 26 6 2.5062 -1.3239 5.9770 27 6 4.0352 -1.3525 5.9308 28 6 2.0482 -0.6245 7.2583 29 6 1.9684 -2.7562 5.9569 30 1 -0.3634 0.5207 0.8859 31 1 -0.3633 0.5069 -0.8940 32 1 -0.3634 -1.0277 0.0078 33 1 1.8964 1.0362 -2.2541 34 1 3.0627 -1.2839 -3.6491 35 1 1.3722 -0.7519 -3.8146 36 1 2.5701 -0.6735 -6.2274 37 1 3.6004 1.3907 -10.1064 38 1 3.4921 -2.4075 -1.2756 39 1 4.1683 -0.8637 -0.6569 40 1 3.6801 -2.0209 1.3953 41 1 2.2022 -2.7693 0.7167 42 1 3.4687 -1.2024 3.5048 43 1 1.9970 -2.2033 3.5233 44 1 4.4184 -0.3322 5.9451 45 1 4.4148 -1.8949 6.7968 46 1 4.3620 -1.8506 5.0179 47 1 0.9588 -0.6036 7.2914 48 1 2.4280 -1.1669 8.1240 49 1 2.4316 0.3958 7.2723 50 1 2.2951 -3.2542 5.0442 51 1 2.3483 -3.2990 6.8225 52 1 0.8791 -2.7358 5.9898 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486076569.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:41 Heat of formation + Delta-G solvation = -107.842178 kcal Electronic energy + Delta-G solvation = -30091.702592 eV Core-core repulsion = 25898.638035 eV Total energy + Delta-G solvation = -4193.064557 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.63780 -39.40617 -38.50578 -37.66661 -34.86924 -33.89718 -33.82794 -31.80703 -31.64642 -30.98434 -28.59020 -27.90077 -27.39509 -26.95321 -25.05966 -23.54811 -23.01417 -20.88031 -20.37924 -19.57085 -19.20918 -18.32513 -17.58082 -16.91503 -16.64316 -16.19460 -16.02515 -15.52735 -15.41305 -14.98792 -14.78560 -14.33650 -14.14951 -14.00236 -13.91410 -13.79990 -13.44409 -13.16565 -13.09167 -13.04567 -12.67406 -12.60877 -12.50684 -12.31870 -12.27900 -12.20040 -12.18766 -11.89757 -11.82075 -11.71349 -11.53990 -11.26239 -11.10705 -11.06142 -10.81903 -10.61801 -10.01396 -9.99456 -9.86835 -9.59497 -8.90921 -8.62954 -8.27648 -8.19342 -6.32735 -3.84391 2.33706 2.39653 3.00237 3.04546 3.13228 3.43289 3.71161 3.98056 4.08117 4.08949 4.32886 4.34070 4.36226 4.52327 4.56953 4.67379 4.73642 4.79019 4.89290 4.95134 5.01636 5.08788 5.11997 5.16651 5.21201 5.23776 5.25816 5.27504 5.36931 5.38558 5.39490 5.46550 5.55748 5.58955 5.71895 5.75080 5.78330 5.81376 5.85880 5.89452 5.99767 6.07846 6.14460 6.75579 7.01824 7.24272 7.45752 7.56001 7.96490 8.12589 8.57560 8.93174 9.40296 9.80131 10.80348 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.030824 B = 0.001754 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.152628 B =15961.670721 C =16133.987810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.135 3.865 3 H 0.089 0.911 4 C 0.078 3.922 5 H 0.064 0.936 6 N -0.656 5.656 7 C 0.049 3.951 8 C 0.449 3.551 9 O -0.563 6.563 10 N -0.590 5.590 11 C -0.306 4.306 12 H 0.120 0.880 13 C 0.042 3.958 14 N -0.880 5.880 15 Si 0.880 3.120 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.269 1.269 19 C -0.124 4.124 20 C 0.096 3.904 21 N -0.612 5.612 22 C 0.530 3.470 23 O -0.516 6.516 24 C 0.045 3.955 25 O -0.351 6.351 26 C 0.104 3.896 27 C -0.181 4.181 28 C -0.137 4.137 29 C -0.180 4.180 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.355 0.645 34 H 0.088 0.912 35 H 0.047 0.953 36 H 0.370 0.630 37 H 0.273 0.727 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.059 0.941 47 H 0.065 0.935 48 H 0.071 0.929 49 H 0.065 0.935 50 H 0.059 0.941 51 H 0.069 0.931 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.926 -15.922 28.527 32.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.032 3.968 3 H 0.107 0.893 4 C -0.033 4.033 5 H 0.082 0.918 6 N -0.290 5.290 7 C -0.084 4.084 8 C 0.235 3.765 9 O -0.445 6.445 10 N -0.229 5.229 11 C -0.434 4.434 12 H 0.137 0.863 13 C -0.161 4.161 14 N -0.520 5.520 15 Si 0.706 3.294 16 H -0.197 1.197 17 H -0.202 1.202 18 H -0.195 1.195 19 C -0.163 4.163 20 C -0.027 4.027 21 N -0.349 5.349 22 C 0.318 3.682 23 O -0.390 6.390 24 C -0.035 4.035 25 O -0.270 6.270 26 C 0.065 3.935 27 C -0.238 4.238 28 C -0.194 4.194 29 C -0.237 4.237 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.176 0.824 34 H 0.106 0.894 35 H 0.065 0.935 36 H 0.203 0.797 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.078 0.922 47 H 0.084 0.916 48 H 0.090 0.910 49 H 0.084 0.916 50 H 0.078 0.922 51 H 0.088 0.912 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.497 -14.471 28.848 32.371 hybrid contribution -1.021 -1.827 -0.937 2.293 sum -3.518 -16.298 27.911 32.512 Atomic orbital electron populations 1.22173 0.94494 1.02221 1.03387 1.21690 0.94356 0.97233 0.83542 0.89325 1.22627 0.95707 0.94079 0.90860 0.91842 1.60153 1.60268 1.07075 1.01479 1.21761 1.00070 0.97561 0.89003 1.19674 0.84805 0.89203 0.82863 1.90580 1.51812 1.21617 1.80493 1.42197 1.61334 1.13324 1.06076 1.19435 1.42095 0.96359 0.85550 0.86263 1.25042 0.97580 0.98011 0.95509 1.69621 1.46690 1.34342 1.01387 0.86670 0.79397 0.84155 0.79140 1.19669 1.20163 1.19487 1.22845 0.99037 1.00971 0.93419 1.22390 0.94958 0.88685 0.96654 1.48391 1.52811 1.29142 1.04581 1.19865 0.80968 0.85469 0.81940 1.90732 1.38635 1.26814 1.82854 1.22175 0.99995 0.96754 0.84548 1.88107 1.75143 1.51972 1.11738 1.21606 0.93089 0.91770 0.87029 1.22463 0.95543 1.03198 1.02608 1.21743 1.02401 1.01156 0.94127 1.22456 1.02389 0.96289 1.02611 0.90890 0.91436 0.92585 0.82446 0.89378 0.93537 0.79709 0.91597 0.89815 0.89048 0.90494 0.91191 0.90161 0.90269 0.91395 0.91230 0.92193 0.91621 0.90985 0.91556 0.92220 0.91230 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.11 37.16 0.34 -1.48 16 2 C 0.14 1.56 2.96 -66.96 -0.20 1.36 16 3 H 0.09 1.21 7.90 -51.93 -0.41 0.80 16 4 C 0.08 0.84 2.82 -65.88 -0.19 0.66 16 5 H 0.06 0.62 7.54 -51.92 -0.39 0.23 16 6 N -0.66 -9.50 5.97 -106.05 -0.63 -10.13 16 7 C 0.05 0.75 6.03 -4.97 -0.03 0.72 16 8 C 0.45 9.90 7.82 -10.99 -0.09 9.82 16 9 O -0.56 -14.91 15.78 5.55 0.09 -14.83 16 10 N -0.59 -13.74 5.09 -10.97 -0.06 -13.80 16 11 C -0.31 -8.57 10.16 -14.93 -0.15 -8.72 16 12 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 13 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 14 N -0.88 -25.56 13.96 55.50 0.77 -24.79 16 15 Si 0.88 19.04 27.74 -169.99 -4.71 14.33 16 16 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 17 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 18 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 19 C -0.12 -1.10 6.76 -24.70 -0.17 -1.27 16 20 C 0.10 0.69 6.68 -2.65 -0.02 0.67 16 21 N -0.61 -6.39 3.07 -163.16 -0.50 -6.89 16 22 C 0.53 6.47 7.72 -10.98 -0.08 6.39 16 23 O -0.52 -8.55 15.53 -14.35 -0.22 -8.77 16 24 C 0.05 0.40 4.63 36.01 0.17 0.56 16 25 O -0.35 -3.77 9.52 -55.14 -0.52 -4.29 16 26 C 0.10 0.75 1.14 -90.62 -0.10 0.64 16 27 C -0.18 -1.03 8.25 37.16 0.31 -0.73 16 28 C -0.14 -0.88 8.84 37.16 0.33 -0.55 16 29 C -0.18 -0.98 8.25 37.16 0.31 -0.67 16 30 H 0.07 0.95 6.88 -51.93 -0.36 0.59 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.35 5.49 8.02 -39.29 -0.32 5.17 16 34 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.05 0.62 8.08 -51.93 -0.42 0.20 16 36 H 0.37 7.51 5.76 -40.82 -0.24 7.27 16 37 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.08 0.41 7.48 -51.93 -0.39 0.02 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.56 6.11 -51.93 -0.32 0.24 16 43 H 0.08 0.52 6.42 -51.93 -0.33 0.19 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.06 0.30 6.54 -51.93 -0.34 -0.04 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 50 H 0.06 0.28 6.54 -51.93 -0.34 -0.06 16 51 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 52 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 412.85 15.07 6.22 6.22 Total: -1.00 -35.60 412.85 -8.14 -43.74 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -8.90 Total: 10.78 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 0.33 Total: 8.43 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: -0.41 Total: -55.61 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.66 Total: -27.89 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -4.71 Total: 14.33 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.60 -8.14 -43.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486076569.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.100 kcal (2) G-P(sol) polarization free energy of solvation -35.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds