Wall clock time and date at job start Wed Apr 1 2020 01:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.87434 * 2 1 4 4 C 1.54319 * 110.01502 * 238.89733 * 2 1 3 5 5 H 1.09007 * 110.72165 * 336.85651 * 4 2 1 6 6 N 1.46895 * 110.72154 * 99.95614 * 4 2 1 7 7 C 1.46904 * 110.99960 * 205.00294 * 6 4 2 8 8 C 1.50701 * 109.47127 * 180.02562 * 7 6 4 9 9 O 1.21294 * 119.99852 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00205 * 180.02562 * 8 7 6 11 11 C 1.37096 * 120.00175 * 179.97438 * 10 8 7 12 12 H 1.07993 * 120.00005 * 359.97438 * 11 10 8 13 13 C 1.38949 * 120.00152 * 179.97438 * 11 10 8 14 14 N 1.31410 * 120.00230 * 180.02562 * 13 11 10 15 15 Si 1.86806 * 119.99768 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.46958 * 90.00106 * 15 13 11 17 17 H 1.48498 * 109.46848 * 209.99973 * 15 13 11 18 18 H 1.48504 * 109.47120 * 330.00103 * 15 13 11 19 19 C 1.55160 * 102.94525 * 218.31999 * 4 2 1 20 20 C 1.54690 * 101.67355 * 35.33465 * 19 4 2 21 21 N 1.47024 * 109.88172 * 121.01069 * 2 1 3 22 22 C 1.34775 * 125.64599 * 298.48092 * 21 2 1 23 23 O 1.21279 * 120.00300 * 359.97438 * 22 21 2 24 24 C 1.50703 * 119.99773 * 179.97438 * 22 21 2 25 25 O 1.42905 * 109.47264 * 179.97438 * 24 22 21 26 26 C 1.42901 * 114.00134 * 179.97438 * 25 24 22 27 27 C 1.53003 * 109.46730 * 60.00260 * 26 25 24 28 28 C 1.52996 * 109.47091 * 179.97438 * 26 25 24 29 29 C 1.52997 * 109.47061 * 300.00278 * 26 25 24 30 30 H 1.08998 * 109.47567 * 300.44207 * 1 2 3 31 31 H 1.09003 * 109.47068 * 60.44507 * 1 2 3 32 32 H 1.09005 * 109.47190 * 180.43666 * 1 2 3 33 33 H 1.00903 * 111.00094 * 328.95557 * 6 4 2 34 34 H 1.09003 * 109.47093 * 299.99700 * 7 6 4 35 35 H 1.08996 * 109.47167 * 59.99514 * 7 6 4 36 36 H 0.97000 * 119.99596 * 359.97438 * 10 8 7 37 37 H 0.96996 * 119.99655 * 180.02562 * 14 13 11 38 38 H 1.08996 * 111.00451 * 153.57184 * 19 4 2 39 39 H 1.08998 * 111.00266 * 277.38913 * 19 4 2 40 40 H 1.09004 * 110.39050 * 204.36887 * 20 19 4 41 41 H 1.08994 * 110.23969 * 82.11794 * 20 19 4 42 42 H 1.09001 * 109.47438 * 59.99564 * 24 22 21 43 43 H 1.09004 * 109.47113 * 299.99819 * 24 22 21 44 44 H 1.08994 * 109.47484 * 60.00123 * 27 26 25 45 45 H 1.09004 * 109.46784 * 179.97438 * 27 26 25 46 46 H 1.09004 * 109.47235 * 299.99514 * 27 26 25 47 47 H 1.09003 * 109.47090 * 59.99900 * 28 26 25 48 48 H 1.08996 * 109.47307 * 180.02562 * 28 26 25 49 49 H 1.09002 * 109.47184 * 300.00269 * 28 26 25 50 50 H 1.08994 * 109.47529 * 60.00146 * 29 26 25 51 51 H 1.09004 * 109.46975 * 179.97438 * 29 26 25 52 52 H 1.09002 * 109.47295 * 299.99669 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0581 -0.7490 -1.2415 5 1 1.3093 -1.4451 -1.6196 6 7 2.4592 0.1994 -2.2891 7 6 2.3930 -0.4244 -3.6175 8 6 2.8111 0.5763 -4.6638 9 8 3.1322 1.6989 -4.3354 10 7 2.8272 0.2242 -5.9647 11 6 3.2071 1.1347 -6.9167 12 1 3.4929 2.1342 -6.6242 13 6 3.2242 0.7716 -8.2577 14 7 3.5888 1.6442 -9.1702 15 14 2.7304 -0.9576 -8.7635 16 1 1.2697 -0.9978 -9.0277 17 1 3.4668 -1.3426 -9.9942 18 1 3.0621 -1.9067 -7.6707 19 6 3.2918 -1.5108 -0.6892 20 6 2.8221 -1.8731 0.7395 21 7 2.0300 -0.7123 1.1850 22 6 1.8059 -0.3593 2.4662 23 8 1.1408 0.6233 2.7171 24 6 2.3820 -1.1855 3.5872 25 8 2.0086 -0.6124 4.8420 26 6 2.5062 -1.3239 5.9770 27 6 4.0352 -1.3525 5.9308 28 6 2.0482 -0.6245 7.2583 29 6 1.9684 -2.7562 5.9569 30 1 -0.3634 0.5207 0.8859 31 1 -0.3633 0.5069 -0.8940 32 1 -0.3634 -1.0277 0.0078 33 1 1.8964 1.0362 -2.2541 34 1 3.0627 -1.2839 -3.6491 35 1 1.3722 -0.7519 -3.8146 36 1 2.5701 -0.6735 -6.2274 37 1 3.6004 1.3907 -10.1064 38 1 3.4921 -2.4075 -1.2756 39 1 4.1683 -0.8637 -0.6569 40 1 3.6801 -2.0209 1.3953 41 1 2.2022 -2.7693 0.7167 42 1 3.4687 -1.2024 3.5048 43 1 1.9970 -2.2033 3.5233 44 1 4.4184 -0.3322 5.9451 45 1 4.4148 -1.8949 6.7968 46 1 4.3620 -1.8506 5.0179 47 1 0.9588 -0.6036 7.2914 48 1 2.4280 -1.1669 8.1240 49 1 2.4316 0.3958 7.2723 50 1 2.2951 -3.2542 5.0442 51 1 2.3483 -3.2990 6.8225 52 1 0.8791 -2.7358 5.9898 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486076569.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:40 Heat of formation + Delta-G solvation = -135.449531 kcal Electronic energy + Delta-G solvation = -30092.899737 eV Core-core repulsion = 25898.638035 eV Total energy + Delta-G solvation = -4194.261702 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.47325 -40.35144 -39.90586 -38.67791 -36.23387 -35.59768 -34.42636 -33.74117 -32.60999 -31.88712 -29.29265 -28.51344 -28.28862 -27.71923 -26.41909 -24.86530 -23.83161 -21.67494 -21.31899 -20.94041 -20.42458 -19.95432 -18.34366 -17.78298 -17.70050 -17.14400 -16.96841 -16.87109 -16.54457 -16.25378 -15.71035 -15.49800 -15.22806 -14.86106 -14.75908 -14.70730 -14.47796 -14.36688 -14.26270 -14.05691 -13.91524 -13.75972 -13.28661 -13.14968 -13.13139 -12.86311 -12.85682 -12.76290 -12.70474 -12.65702 -12.40426 -12.38984 -12.22203 -11.97503 -11.95078 -11.67183 -11.56375 -11.49948 -10.78734 -10.59182 -10.42669 -10.23987 -9.74555 -9.37438 -8.40030 -6.01442 1.31613 1.37648 1.46758 1.51814 1.58391 1.97659 2.24890 2.69703 2.86357 3.16637 3.31698 3.39511 3.64333 3.70704 3.89456 3.95794 4.02575 4.07372 4.11964 4.15828 4.21814 4.25421 4.33714 4.38037 4.46529 4.54341 4.58855 4.66546 4.67501 4.71213 4.76653 4.80790 4.81667 4.94373 4.94681 4.96748 5.07484 5.15802 5.17122 5.27112 5.33088 5.34521 5.37381 5.54271 5.91653 6.05985 6.18513 6.27717 6.47699 6.60920 6.89553 7.09897 7.41131 7.98579 8.77737 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.030824 B = 0.001754 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.152628 B =15961.670721 C =16133.987810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.133 3.867 3 H 0.053 0.947 4 C 0.084 3.916 5 H 0.090 0.910 6 N -0.677 5.677 7 C 0.065 3.935 8 C 0.447 3.553 9 O -0.617 6.617 10 N -0.589 5.589 11 C -0.330 4.330 12 H 0.052 0.948 13 C -0.017 4.017 14 N -0.936 5.936 15 Si 0.967 3.033 16 H -0.258 1.258 17 H -0.277 1.277 18 H -0.226 1.226 19 C -0.121 4.121 20 C 0.096 3.904 21 N -0.610 5.610 22 C 0.520 3.480 23 O -0.575 6.575 24 C 0.051 3.949 25 O -0.388 6.388 26 C 0.095 3.905 27 C -0.178 4.178 28 C -0.139 4.139 29 C -0.176 4.176 30 H 0.045 0.955 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.343 0.657 34 H 0.122 0.878 35 H 0.082 0.918 36 H 0.391 0.609 37 H 0.279 0.721 38 H 0.111 0.889 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.109 0.891 44 H 0.052 0.948 45 H 0.087 0.913 46 H 0.070 0.930 47 H 0.054 0.946 48 H 0.095 0.905 49 H 0.051 0.949 50 H 0.071 0.929 51 H 0.086 0.914 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.109 -21.839 29.462 36.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.029 3.971 3 H 0.071 0.929 4 C -0.026 4.026 5 H 0.108 0.892 6 N -0.310 5.310 7 C -0.067 4.067 8 C 0.235 3.765 9 O -0.502 6.502 10 N -0.231 5.231 11 C -0.460 4.460 12 H 0.070 0.930 13 C -0.215 4.215 14 N -0.576 5.576 15 Si 0.787 3.213 16 H -0.182 1.182 17 H -0.202 1.202 18 H -0.149 1.149 19 C -0.160 4.160 20 C -0.026 4.026 21 N -0.345 5.345 22 C 0.310 3.690 23 O -0.454 6.454 24 C -0.028 4.028 25 O -0.308 6.308 26 C 0.056 3.944 27 C -0.236 4.236 28 C -0.196 4.196 29 C -0.234 4.234 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.162 0.838 34 H 0.139 0.861 35 H 0.100 0.900 36 H 0.227 0.773 37 H 0.088 0.912 38 H 0.129 0.871 39 H 0.087 0.913 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.126 0.874 44 H 0.071 0.929 45 H 0.106 0.894 46 H 0.089 0.911 47 H 0.073 0.927 48 H 0.114 0.886 49 H 0.070 0.930 50 H 0.090 0.910 51 H 0.105 0.895 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.659 -20.447 29.806 36.243 hybrid contribution -0.924 0.183 -1.149 1.485 sum -3.582 -20.264 28.658 35.281 Atomic orbital electron populations 1.22079 0.94238 1.02943 1.02175 1.21587 0.94576 0.96042 0.84944 0.92879 1.22694 0.97396 0.93426 0.89078 0.89249 1.60174 1.61038 1.07726 1.02042 1.21696 1.02510 0.95689 0.86828 1.21056 0.82243 0.89695 0.83532 1.90563 1.53488 1.24662 1.81475 1.42002 1.61865 1.13438 1.05816 1.18999 1.44182 0.95207 0.87572 0.92967 1.26164 0.96589 1.04194 0.94558 1.69815 1.47992 1.37731 1.02111 0.85339 0.79372 0.77009 0.79617 1.18218 1.20187 1.14928 1.22870 0.97121 1.01246 0.94751 1.22688 0.95951 0.88071 0.95882 1.48483 1.52455 1.29761 1.03817 1.20641 0.80231 0.85087 0.83090 1.90702 1.41404 1.29449 1.83820 1.22250 1.00914 0.96887 0.82748 1.88075 1.76026 1.53634 1.13086 1.21862 0.94062 0.92546 0.85881 1.22449 0.94370 1.02721 1.04019 1.21802 1.01771 1.00859 0.95204 1.22428 1.01723 0.95146 1.04060 0.93583 0.91233 0.90696 0.83755 0.86059 0.89989 0.77331 0.91182 0.87067 0.91257 0.88045 0.88078 0.88049 0.87375 0.92891 0.89402 0.91130 0.92673 0.88589 0.92955 0.91028 0.89469 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 9.11 71.98 0.66 -2.73 16 2 C 0.13 2.98 2.96 45.34 0.13 3.11 16 3 H 0.05 1.56 7.90 -2.39 -0.02 1.54 16 4 C 0.08 1.56 2.82 46.10 0.13 1.69 16 5 H 0.09 1.27 7.54 -2.38 -0.02 1.25 16 6 N -0.68 -18.60 5.97 -489.44 -2.92 -21.52 16 7 C 0.06 1.78 6.03 85.56 0.52 2.30 16 8 C 0.45 19.54 7.82 87.66 0.69 20.23 16 9 O -0.62 -34.13 15.78 -3.07 -0.05 -34.18 16 10 N -0.59 -27.00 5.09 -306.99 -1.56 -28.57 16 11 C -0.33 -19.23 10.16 84.04 0.85 -18.38 16 12 H 0.05 3.66 7.39 -2.91 -0.02 3.63 16 13 C -0.02 -0.91 5.50 84.93 0.47 -0.45 16 14 N -0.94 -56.33 13.96 21.66 0.30 -56.03 16 15 Si 0.97 37.77 27.74 68.60 1.90 39.67 16 16 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 17 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 18 H -0.23 -7.21 6.52 99.48 0.65 -6.56 16 19 C -0.12 -1.68 6.76 31.91 0.22 -1.46 16 20 C 0.10 0.96 6.68 86.78 0.58 1.54 16 21 N -0.61 -11.73 3.07 -788.51 -2.42 -14.15 16 22 C 0.52 12.49 7.72 87.66 0.68 13.17 16 23 O -0.57 -20.07 15.53 16.01 0.25 -19.82 16 24 C 0.05 0.80 4.63 71.24 0.33 1.13 16 25 O -0.39 -8.18 9.52 -129.94 -1.24 -9.41 16 26 C 0.09 1.22 1.14 -10.79 -0.01 1.21 16 27 C -0.18 -1.66 8.25 71.98 0.59 -1.06 16 28 C -0.14 -1.73 8.84 71.98 0.64 -1.09 16 29 C -0.18 -1.44 8.25 71.98 0.59 -0.85 16 30 H 0.05 1.25 6.88 -2.39 -0.02 1.23 16 31 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.34 10.76 8.02 -89.69 -0.72 10.04 16 34 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.08 1.75 8.08 -2.39 -0.02 1.73 16 36 H 0.39 14.47 5.76 -92.71 -0.53 13.94 16 37 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 38 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.10 0.58 7.48 -2.38 -0.02 0.56 16 41 H 0.10 0.50 8.14 -2.39 -0.02 0.49 16 42 H 0.10 1.12 6.11 -2.39 -0.01 1.10 16 43 H 0.11 1.03 6.42 -2.38 -0.02 1.01 16 44 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.09 0.48 8.14 -2.38 -0.02 0.47 16 46 H 0.07 0.49 6.54 -2.39 -0.02 0.48 16 47 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.07 0.40 6.54 -2.39 -0.02 0.39 16 51 H 0.09 0.40 8.14 -2.38 -0.02 0.38 16 52 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -88.39 412.85 0.94 -87.46 By element: Atomic # 1 Polarization: 38.60 SS G_CDS: -0.39 Total: 38.21 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: 7.06 Total: 18.35 kcal Atomic # 7 Polarization: -113.67 SS G_CDS: -6.60 Total: -120.27 kcal Atomic # 8 Polarization: -62.38 SS G_CDS: -1.04 Total: -63.41 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 1.90 Total: 39.67 kcal Total: -88.39 0.94 -87.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486076569.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.994 kcal (2) G-P(sol) polarization free energy of solvation -88.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds