Wall clock time and date at job start Wed Apr 1 2020 01:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 110.00166 * 2 1 4 4 C 1.54321 * 109.88652 * 121.09800 * 2 1 3 5 5 H 1.09002 * 110.71668 * 23.06948 * 4 2 1 6 6 N 1.46895 * 110.72216 * 259.97764 * 4 2 1 7 7 C 1.46893 * 111.00318 * 157.43754 * 6 4 2 8 8 C 1.50708 * 109.47146 * 179.97438 * 7 6 4 9 9 O 1.21288 * 119.99815 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99719 * 180.02562 * 8 7 6 11 11 C 1.37101 * 119.99349 * 180.02562 * 10 8 7 12 12 H 1.07991 * 120.00515 * 359.97438 * 11 10 8 13 13 C 1.38955 * 119.99490 * 179.97438 * 11 10 8 14 14 N 1.31413 * 120.00236 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99845 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47187 * 179.97438 * 15 13 11 17 17 H 1.48502 * 109.47194 * 300.00675 * 15 13 11 18 18 H 1.48498 * 109.47018 * 60.00238 * 15 13 11 19 19 C 1.55157 * 103.10301 * 141.51878 * 4 2 1 20 20 C 1.55116 * 101.48512 * 324.71781 * 19 4 2 21 21 N 1.47026 * 109.88081 * 238.90747 * 2 1 3 22 22 C 1.34771 * 125.65074 * 61.60491 * 21 2 1 23 23 O 1.21283 * 119.99959 * 359.97438 * 22 21 2 24 24 C 1.50705 * 120.00112 * 180.02562 * 22 21 2 25 25 O 1.42900 * 109.46970 * 179.97438 * 24 22 21 26 26 C 1.42907 * 114.00041 * 179.97438 * 25 24 22 27 27 C 1.52998 * 109.46882 * 60.00130 * 26 25 24 28 28 C 1.52991 * 109.47155 * 180.02562 * 26 25 24 29 29 C 1.53002 * 109.46770 * 300.00291 * 26 25 24 30 30 H 1.09003 * 109.46677 * 298.90433 * 1 2 3 31 31 H 1.09003 * 109.47101 * 58.90145 * 1 2 3 32 32 H 1.08998 * 109.47010 * 178.90347 * 1 2 3 33 33 H 1.00899 * 111.00063 * 33.47930 * 6 4 2 34 34 H 1.09002 * 109.47091 * 59.99845 * 7 6 4 35 35 H 1.09000 * 109.47343 * 299.99463 * 7 6 4 36 36 H 0.96996 * 120.00564 * 359.97438 * 10 8 7 37 37 H 0.97001 * 119.99781 * 179.97438 * 14 13 11 38 38 H 1.08992 * 111.00597 * 82.66732 * 19 4 2 39 39 H 1.09002 * 111.00076 * 206.51382 * 19 4 2 40 40 H 1.09001 * 110.21229 * 277.95737 * 20 19 4 41 41 H 1.09002 * 110.51269 * 155.75313 * 20 19 4 42 42 H 1.08995 * 109.46955 * 299.99884 * 24 22 21 43 43 H 1.08995 * 109.47034 * 59.99866 * 24 22 21 44 44 H 1.09004 * 109.46919 * 60.00186 * 27 26 25 45 45 H 1.08997 * 109.47088 * 179.97438 * 27 26 25 46 46 H 1.09002 * 109.47125 * 300.00342 * 27 26 25 47 47 H 1.08996 * 109.47399 * 60.00225 * 28 26 25 48 48 H 1.08997 * 109.47099 * 180.02562 * 28 26 25 49 49 H 1.09004 * 109.47179 * 300.00140 * 28 26 25 50 50 H 1.09003 * 109.46974 * 60.00235 * 29 26 25 51 51 H 1.08997 * 109.46620 * 179.97438 * 29 26 25 52 52 H 1.08996 * 109.47393 * 299.99535 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0550 -0.7495 1.2426 5 1 1.3041 -1.4437 1.6200 6 7 2.4566 0.1985 2.2903 7 6 2.4429 -0.4411 3.6126 8 6 2.8601 0.5598 4.6592 9 8 3.1416 1.6942 4.3353 10 7 2.9213 0.1940 5.9549 11 6 3.3003 1.1048 6.9070 12 1 3.5502 2.1151 6.6188 13 6 3.3629 0.7278 8.2430 14 7 3.0584 -0.5015 8.5939 15 14 3.8800 1.9684 9.5403 16 1 3.8656 1.3220 10.8771 17 1 5.2502 2.4563 9.2404 18 1 2.9347 3.1136 9.5346 19 6 3.2871 -1.5177 0.6956 20 6 2.8145 -1.8794 -0.7369 21 7 2.0300 -0.7140 -1.1840 22 6 1.8074 -0.3620 -2.4657 23 8 1.1428 0.6207 -2.7180 24 6 2.3833 -1.1900 -3.5855 25 8 2.0105 -0.6183 -4.8410 26 6 2.5089 -1.3309 -5.9751 27 6 1.9714 -2.7632 -5.9539 28 6 2.0515 -0.6328 -7.2573 29 6 4.0379 -1.3591 -5.9279 30 1 -0.3633 0.4967 0.8997 31 1 -0.3633 0.5308 -0.8800 32 1 -0.3633 -1.0275 -0.0197 33 1 1.8699 1.0193 2.2796 34 1 3.1371 -1.2815 3.6169 35 1 1.4373 -0.7994 3.8325 36 1 2.6965 -0.7133 6.2139 37 1 3.1025 -0.7647 9.5264 38 1 4.1665 -0.8746 0.6650 39 1 3.4812 -2.4145 1.2841 40 1 2.1886 -2.7715 -0.7130 41 1 3.6705 -2.0350 -1.3936 42 1 3.4699 -1.2080 -3.5023 43 1 1.9971 -2.2072 -3.5209 44 1 0.8821 -2.7429 -5.9874 45 1 2.3511 -3.3065 -6.8191 46 1 2.2976 -3.2602 -5.0403 47 1 2.4347 0.3874 -7.2722 48 1 2.4312 -1.1766 -8.1223 49 1 0.9622 -0.6123 -7.2911 50 1 4.3641 -1.8563 -5.0143 51 1 4.4180 -1.9030 -6.7926 52 1 4.4209 -0.3388 -5.9430 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486076574.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:44 Heat of formation + Delta-G solvation = -115.181583 kcal Electronic energy + Delta-G solvation = -30028.773637 eV Core-core repulsion = 25835.390820 eV Total energy + Delta-G solvation = -4193.382818 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.58549 -39.36324 -38.34104 -37.57692 -34.77935 -33.85154 -33.78401 -31.71533 -31.25959 -30.85760 -28.54938 -27.87944 -27.30428 -26.84307 -25.02827 -23.67003 -22.98403 -20.80918 -20.34055 -19.54102 -19.01637 -17.89793 -17.54018 -16.86593 -16.61545 -16.16426 -16.01518 -15.49347 -15.28880 -14.89178 -14.52827 -14.30109 -14.19183 -13.89962 -13.82168 -13.77821 -13.62198 -13.20558 -13.06018 -12.97568 -12.65266 -12.50991 -12.38392 -12.28137 -12.21879 -12.17019 -11.83478 -11.76397 -11.69801 -11.55229 -11.42539 -11.13702 -11.03812 -10.98787 -10.74805 -10.44981 -10.22547 -9.98930 -9.83186 -9.51364 -8.86258 -8.49911 -8.15701 -7.97830 -6.43071 -3.83927 2.37715 2.43264 3.19641 3.25416 3.29943 3.46714 3.88728 4.03289 4.12989 4.26882 4.36396 4.36958 4.40651 4.54891 4.61521 4.70413 4.80394 4.93469 4.97347 5.03854 5.07981 5.10897 5.19016 5.21655 5.25630 5.27123 5.28307 5.33020 5.40188 5.40877 5.43897 5.55165 5.57866 5.72968 5.80107 5.80392 5.83169 5.90265 5.95156 6.03545 6.11056 6.18886 6.26238 6.78178 7.14588 7.28913 7.53943 7.55507 8.00198 8.04566 8.59552 9.16456 9.52415 10.03835 10.74479 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.032865 B = 0.001678 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.754386 B =16679.454088 C =16800.368956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.136 3.864 3 H 0.089 0.911 4 C 0.078 3.922 5 H 0.062 0.938 6 N -0.656 5.656 7 C 0.052 3.948 8 C 0.440 3.560 9 O -0.582 6.582 10 N -0.563 5.563 11 C -0.300 4.300 12 H 0.103 0.897 13 C 0.023 3.977 14 N -0.902 5.902 15 Si 0.931 3.069 16 H -0.284 1.284 17 H -0.273 1.273 18 H -0.274 1.274 19 C -0.124 4.124 20 C 0.096 3.904 21 N -0.612 5.612 22 C 0.530 3.470 23 O -0.517 6.517 24 C 0.045 3.955 25 O -0.351 6.351 26 C 0.104 3.896 27 C -0.180 4.180 28 C -0.137 4.137 29 C -0.181 4.181 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.353 0.647 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.059 0.941 47 H 0.065 0.935 48 H 0.071 0.929 49 H 0.065 0.935 50 H 0.059 0.941 51 H 0.069 0.931 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.514 -11.097 -26.769 29.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.033 3.967 3 H 0.107 0.893 4 C -0.033 4.033 5 H 0.080 0.920 6 N -0.290 5.290 7 C -0.081 4.081 8 C 0.225 3.775 9 O -0.466 6.466 10 N -0.199 5.199 11 C -0.430 4.430 12 H 0.120 0.880 13 C -0.179 4.179 14 N -0.543 5.543 15 Si 0.758 3.242 16 H -0.210 1.210 17 H -0.199 1.199 18 H -0.199 1.199 19 C -0.162 4.162 20 C -0.027 4.027 21 N -0.349 5.349 22 C 0.317 3.683 23 O -0.391 6.391 24 C -0.035 4.035 25 O -0.270 6.270 26 C 0.065 3.935 27 C -0.238 4.238 28 C -0.194 4.194 29 C -0.238 4.238 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.174 0.826 34 H 0.105 0.895 35 H 0.063 0.937 36 H 0.225 0.775 37 H 0.082 0.918 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.078 0.922 47 H 0.084 0.916 48 H 0.090 0.910 49 H 0.084 0.916 50 H 0.078 0.922 51 H 0.088 0.912 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.154 -9.778 -27.137 28.868 hybrid contribution -0.572 -0.546 1.210 1.446 sum -1.725 -10.324 -25.927 27.960 Atomic orbital electron populations 1.22174 0.94540 1.02238 1.03304 1.21670 0.94300 0.97204 0.83517 0.89327 1.22619 0.95710 0.94035 0.90931 0.92011 1.60152 1.58954 1.07677 1.02203 1.21718 1.00182 0.97377 0.88817 1.19776 0.85169 0.89163 0.83374 1.90535 1.54257 1.21023 1.80823 1.41847 1.59457 1.13704 1.04934 1.19662 1.42201 0.94909 0.86230 0.87952 1.25259 0.97451 0.96944 0.98215 1.69603 1.48728 1.17201 1.18777 0.85913 0.79350 0.79913 0.79020 1.20980 1.19877 1.19916 1.22912 0.99022 1.00934 0.93358 1.22465 0.95054 0.88552 0.96641 1.48392 1.53045 1.28864 1.04583 1.19859 0.80960 0.85497 0.81938 1.90730 1.38678 1.26886 1.82829 1.22174 1.00003 0.96768 0.84529 1.88106 1.75118 1.51996 1.11746 1.21603 0.93077 0.91761 0.87051 1.22458 1.02395 0.96291 1.02611 1.21741 1.02403 1.01150 0.94128 1.22462 0.95554 1.03178 1.02617 0.91444 0.90958 0.92572 0.82639 0.89506 0.93683 0.77466 0.91822 0.89099 0.89762 0.91192 0.90525 0.90163 0.90270 0.91501 0.91240 0.92196 0.91564 0.90997 0.91629 0.92183 0.91241 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.09 37.16 0.34 -1.57 16 2 C 0.14 1.65 2.98 -66.95 -0.20 1.45 16 3 H 0.09 1.26 7.93 -51.93 -0.41 0.85 16 4 C 0.08 0.90 2.78 -65.88 -0.18 0.72 16 5 H 0.06 0.66 7.56 -51.93 -0.39 0.27 16 6 N -0.66 -10.06 5.94 -106.06 -0.63 -10.69 16 7 C 0.05 0.86 6.04 -4.98 -0.03 0.83 16 8 C 0.44 10.16 7.82 -10.98 -0.09 10.07 16 9 O -0.58 -15.66 15.78 5.55 0.09 -15.57 16 10 N -0.56 -14.02 5.29 -10.96 -0.06 -14.08 16 11 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 12 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 13 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 14 N -0.90 -24.24 13.05 55.50 0.72 -23.51 16 15 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 C -0.12 -1.18 6.78 -24.47 -0.17 -1.35 16 20 C 0.10 0.74 6.70 -2.42 -0.02 0.73 16 21 N -0.61 -6.69 3.07 -162.88 -0.50 -7.19 16 22 C 0.53 6.67 7.72 -10.99 -0.08 6.58 16 23 O -0.52 -8.72 15.55 -14.35 -0.22 -8.95 16 24 C 0.05 0.41 4.62 36.01 0.17 0.58 16 25 O -0.35 -3.86 9.52 -55.14 -0.52 -4.38 16 26 C 0.10 0.77 1.14 -90.62 -0.10 0.67 16 27 C -0.18 -1.02 8.25 37.16 0.31 -0.71 16 28 C -0.14 -0.91 8.84 37.15 0.33 -0.58 16 29 C -0.18 -1.07 8.25 37.16 0.31 -0.77 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.97 6.90 -51.93 -0.36 0.61 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.35 5.74 8.08 -39.29 -0.32 5.42 16 34 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.05 0.67 8.08 -51.93 -0.42 0.25 16 36 H 0.39 9.29 7.90 -40.82 -0.32 8.96 16 37 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.44 7.47 -51.93 -0.39 0.05 16 42 H 0.08 0.58 6.12 -51.93 -0.32 0.27 16 43 H 0.08 0.55 6.42 -51.93 -0.33 0.21 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.06 0.30 6.54 -51.93 -0.34 -0.04 16 47 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.06 0.32 6.54 -51.93 -0.34 -0.02 16 51 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 52 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 416.11 15.07 6.27 6.27 Total: -1.00 -34.21 416.11 -8.49 -42.70 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -8.95 Total: 10.78 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: 0.34 Total: 8.69 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.46 Total: -55.47 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.66 Total: -28.90 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.21 -8.49 -42.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486076574.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.480 kcal (2) G-P(sol) polarization free energy of solvation -34.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds