Wall clock time and date at job start Wed Apr 1 2020 01:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 110.00166 * 2 1 4 4 C 1.54321 * 109.88652 * 121.09800 * 2 1 3 5 5 H 1.09002 * 110.71668 * 23.06948 * 4 2 1 6 6 N 1.46895 * 110.72216 * 259.97764 * 4 2 1 7 7 C 1.46893 * 111.00318 * 157.43754 * 6 4 2 8 8 C 1.50708 * 109.47146 * 179.97438 * 7 6 4 9 9 O 1.21288 * 119.99815 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99719 * 180.02562 * 8 7 6 11 11 C 1.37101 * 119.99349 * 180.02562 * 10 8 7 12 12 H 1.07991 * 120.00515 * 359.97438 * 11 10 8 13 13 C 1.38955 * 119.99490 * 179.97438 * 11 10 8 14 14 N 1.31413 * 120.00236 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99845 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47187 * 179.97438 * 15 13 11 17 17 H 1.48502 * 109.47194 * 300.00675 * 15 13 11 18 18 H 1.48498 * 109.47018 * 60.00238 * 15 13 11 19 19 C 1.55157 * 103.10301 * 141.51878 * 4 2 1 20 20 C 1.55116 * 101.48512 * 324.71781 * 19 4 2 21 21 N 1.47026 * 109.88081 * 238.90747 * 2 1 3 22 22 C 1.34771 * 125.65074 * 61.60491 * 21 2 1 23 23 O 1.21283 * 119.99959 * 359.97438 * 22 21 2 24 24 C 1.50705 * 120.00112 * 180.02562 * 22 21 2 25 25 O 1.42900 * 109.46970 * 179.97438 * 24 22 21 26 26 C 1.42907 * 114.00041 * 179.97438 * 25 24 22 27 27 C 1.52998 * 109.46882 * 60.00130 * 26 25 24 28 28 C 1.52991 * 109.47155 * 180.02562 * 26 25 24 29 29 C 1.53002 * 109.46770 * 300.00291 * 26 25 24 30 30 H 1.09003 * 109.46677 * 298.90433 * 1 2 3 31 31 H 1.09003 * 109.47101 * 58.90145 * 1 2 3 32 32 H 1.08998 * 109.47010 * 178.90347 * 1 2 3 33 33 H 1.00899 * 111.00063 * 33.47930 * 6 4 2 34 34 H 1.09002 * 109.47091 * 59.99845 * 7 6 4 35 35 H 1.09000 * 109.47343 * 299.99463 * 7 6 4 36 36 H 0.96996 * 120.00564 * 359.97438 * 10 8 7 37 37 H 0.97001 * 119.99781 * 179.97438 * 14 13 11 38 38 H 1.08992 * 111.00597 * 82.66732 * 19 4 2 39 39 H 1.09002 * 111.00076 * 206.51382 * 19 4 2 40 40 H 1.09001 * 110.21229 * 277.95737 * 20 19 4 41 41 H 1.09002 * 110.51269 * 155.75313 * 20 19 4 42 42 H 1.08995 * 109.46955 * 299.99884 * 24 22 21 43 43 H 1.08995 * 109.47034 * 59.99866 * 24 22 21 44 44 H 1.09004 * 109.46919 * 60.00186 * 27 26 25 45 45 H 1.08997 * 109.47088 * 179.97438 * 27 26 25 46 46 H 1.09002 * 109.47125 * 300.00342 * 27 26 25 47 47 H 1.08996 * 109.47399 * 60.00225 * 28 26 25 48 48 H 1.08997 * 109.47099 * 180.02562 * 28 26 25 49 49 H 1.09004 * 109.47179 * 300.00140 * 28 26 25 50 50 H 1.09003 * 109.46974 * 60.00235 * 29 26 25 51 51 H 1.08997 * 109.46620 * 179.97438 * 29 26 25 52 52 H 1.08996 * 109.47393 * 299.99535 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0550 -0.7495 1.2426 5 1 1.3041 -1.4437 1.6200 6 7 2.4566 0.1985 2.2903 7 6 2.4429 -0.4411 3.6126 8 6 2.8601 0.5598 4.6592 9 8 3.1416 1.6942 4.3353 10 7 2.9213 0.1940 5.9549 11 6 3.3003 1.1048 6.9070 12 1 3.5502 2.1151 6.6188 13 6 3.3629 0.7278 8.2430 14 7 3.0584 -0.5015 8.5939 15 14 3.8800 1.9684 9.5403 16 1 3.8656 1.3220 10.8771 17 1 5.2502 2.4563 9.2404 18 1 2.9347 3.1136 9.5346 19 6 3.2871 -1.5177 0.6956 20 6 2.8145 -1.8794 -0.7369 21 7 2.0300 -0.7140 -1.1840 22 6 1.8074 -0.3620 -2.4657 23 8 1.1428 0.6207 -2.7180 24 6 2.3833 -1.1900 -3.5855 25 8 2.0105 -0.6183 -4.8410 26 6 2.5089 -1.3309 -5.9751 27 6 1.9714 -2.7632 -5.9539 28 6 2.0515 -0.6328 -7.2573 29 6 4.0379 -1.3591 -5.9279 30 1 -0.3633 0.4967 0.8997 31 1 -0.3633 0.5308 -0.8800 32 1 -0.3633 -1.0275 -0.0197 33 1 1.8699 1.0193 2.2796 34 1 3.1371 -1.2815 3.6169 35 1 1.4373 -0.7994 3.8325 36 1 2.6965 -0.7133 6.2139 37 1 3.1025 -0.7647 9.5264 38 1 4.1665 -0.8746 0.6650 39 1 3.4812 -2.4145 1.2841 40 1 2.1886 -2.7715 -0.7130 41 1 3.6705 -2.0350 -1.3936 42 1 3.4699 -1.2080 -3.5023 43 1 1.9971 -2.2072 -3.5209 44 1 0.8821 -2.7429 -5.9874 45 1 2.3511 -3.3065 -6.8191 46 1 2.2976 -3.2602 -5.0403 47 1 2.4347 0.3874 -7.2722 48 1 2.4312 -1.1766 -8.1223 49 1 0.9622 -0.6123 -7.2911 50 1 4.3641 -1.8563 -5.0143 51 1 4.4180 -1.9030 -6.7926 52 1 4.4209 -0.3388 -5.9430 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486076574.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:44 Heat of formation + Delta-G solvation = -140.000473 kcal Electronic energy + Delta-G solvation = -30029.849865 eV Core-core repulsion = 25835.390820 eV Total energy + Delta-G solvation = -4194.459046 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.46715 -40.25236 -39.85798 -38.66297 -36.20529 -35.55962 -34.42477 -33.27075 -32.59675 -31.84877 -29.26077 -28.41054 -28.28679 -27.71258 -26.50039 -24.98833 -23.84677 -21.67028 -21.18856 -20.89401 -20.16462 -19.82130 -18.34331 -17.81032 -17.69989 -17.14335 -16.88976 -16.83453 -16.42452 -16.24717 -15.85018 -15.47131 -15.39913 -14.90888 -14.74755 -14.69302 -14.42803 -14.28210 -14.13394 -13.93366 -13.78278 -13.47766 -13.28562 -13.13145 -13.11447 -12.86151 -12.83500 -12.76238 -12.70803 -12.65469 -12.42906 -12.38325 -12.22051 -12.12143 -11.96526 -11.67951 -11.56251 -11.49646 -10.78715 -10.59036 -10.33860 -10.00495 -9.74944 -9.37973 -8.45863 -5.94305 1.40274 1.42492 1.51783 1.52795 1.58214 2.06902 2.29878 2.79473 2.94522 3.21624 3.32304 3.50788 3.63241 3.71248 3.89670 3.96053 4.02205 4.07553 4.12161 4.21010 4.23817 4.30373 4.33322 4.37753 4.51548 4.53674 4.61052 4.66773 4.67685 4.70720 4.76223 4.80891 4.81873 4.94365 4.94926 4.96392 5.06132 5.15071 5.17208 5.25484 5.33168 5.33526 5.37538 5.41882 5.89894 6.10923 6.18630 6.29309 6.47643 6.61504 7.09561 7.13857 7.57674 8.13561 8.71041 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.032865 B = 0.001678 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.754386 B =16679.454088 C =16800.368956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.135 3.865 3 H 0.056 0.944 4 C 0.082 3.918 5 H 0.083 0.917 6 N -0.673 5.673 7 C 0.069 3.931 8 C 0.436 3.564 9 O -0.626 6.626 10 N -0.571 5.571 11 C -0.336 4.336 12 H 0.077 0.923 13 C -0.010 4.010 14 N -0.918 5.918 15 Si 0.991 3.009 16 H -0.269 1.269 17 H -0.273 1.273 18 H -0.274 1.274 19 C -0.121 4.121 20 C 0.096 3.904 21 N -0.610 5.610 22 C 0.521 3.479 23 O -0.574 6.574 24 C 0.051 3.949 25 O -0.388 6.388 26 C 0.095 3.905 27 C -0.177 4.177 28 C -0.139 4.139 29 C -0.178 4.178 30 H 0.068 0.932 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.343 0.657 34 H 0.112 0.888 35 H 0.071 0.929 36 H 0.398 0.602 37 H 0.278 0.722 38 H 0.070 0.930 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.108 0.892 44 H 0.055 0.945 45 H 0.087 0.913 46 H 0.070 0.930 47 H 0.052 0.948 48 H 0.095 0.905 49 H 0.054 0.946 50 H 0.069 0.931 51 H 0.087 0.913 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.814 -14.266 -27.201 30.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.031 3.969 3 H 0.074 0.926 4 C -0.028 4.028 5 H 0.100 0.900 6 N -0.305 5.305 7 C -0.064 4.064 8 C 0.224 3.776 9 O -0.513 6.513 10 N -0.209 5.209 11 C -0.466 4.466 12 H 0.095 0.905 13 C -0.210 4.210 14 N -0.559 5.559 15 Si 0.815 3.185 16 H -0.194 1.194 17 H -0.198 1.198 18 H -0.199 1.199 19 C -0.160 4.160 20 C -0.025 4.025 21 N -0.345 5.345 22 C 0.310 3.690 23 O -0.453 6.453 24 C -0.028 4.028 25 O -0.308 6.308 26 C 0.057 3.943 27 C -0.234 4.234 28 C -0.196 4.196 29 C -0.236 4.236 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.162 0.838 34 H 0.130 0.870 35 H 0.088 0.912 36 H 0.232 0.768 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.126 0.874 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.126 0.874 44 H 0.075 0.925 45 H 0.105 0.895 46 H 0.089 0.911 47 H 0.071 0.929 48 H 0.114 0.886 49 H 0.073 0.927 50 H 0.088 0.912 51 H 0.106 0.894 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.437 -13.018 -27.568 30.490 hybrid contribution -0.791 0.461 1.281 1.574 sum -1.228 -12.557 -26.287 29.158 Atomic orbital electron populations 1.22081 0.94273 1.02867 1.02207 1.21540 0.94512 0.96056 0.84765 0.92616 1.22684 0.97373 0.93417 0.89307 0.89955 1.60172 1.59606 1.08334 1.02425 1.21576 1.01879 0.95646 0.87260 1.20931 0.83152 0.89721 0.83830 1.90506 1.55706 1.23480 1.81579 1.41901 1.60020 1.13549 1.05416 1.19615 1.44442 0.94748 0.87758 0.90514 1.25989 0.96869 0.98751 0.99425 1.69655 1.48547 1.18146 1.19503 0.85022 0.78734 0.77788 0.76987 1.19390 1.19829 1.19902 1.22931 0.97145 1.01085 0.94811 1.22742 0.96128 0.87914 0.95732 1.48478 1.52707 1.29461 1.03853 1.20638 0.80216 0.85129 0.83009 1.90700 1.41373 1.29464 1.83752 1.22243 1.00946 0.96851 0.82748 1.88074 1.76005 1.53638 1.13060 1.21862 0.94062 0.92508 0.85911 1.22432 1.01730 0.95191 1.04039 1.21800 1.01777 1.00879 0.95164 1.22448 0.94364 1.02738 1.04013 0.91288 0.93380 0.90878 0.83783 0.87035 0.91150 0.76836 0.91283 0.91080 0.87419 0.88238 0.87854 0.88001 0.87434 0.92538 0.89455 0.91068 0.92907 0.88583 0.92680 0.91169 0.89395 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 9.09 71.98 0.65 -2.97 16 2 C 0.14 3.25 2.98 45.34 0.13 3.38 16 3 H 0.06 1.70 7.93 -2.39 -0.02 1.68 16 4 C 0.08 1.74 2.78 46.10 0.13 1.86 16 5 H 0.08 1.46 7.56 -2.39 -0.02 1.44 16 6 N -0.67 -20.14 5.94 -489.46 -2.91 -23.05 16 7 C 0.07 2.17 6.04 85.56 0.52 2.68 16 8 C 0.44 20.26 7.82 87.66 0.69 20.95 16 9 O -0.63 -34.67 15.78 -3.05 -0.05 -34.72 16 10 N -0.57 -28.72 5.29 -306.98 -1.62 -30.34 16 11 C -0.34 -18.97 9.68 84.04 0.81 -18.15 16 12 H 0.08 4.64 7.16 -2.92 -0.02 4.62 16 13 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 14 N -0.92 -48.69 13.05 21.66 0.28 -48.41 16 15 Si 0.99 42.72 29.55 68.60 2.03 44.75 16 16 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 17 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 19 C -0.12 -1.95 6.78 32.06 0.22 -1.73 16 20 C 0.10 1.13 6.70 86.93 0.58 1.71 16 21 N -0.61 -12.49 3.07 -787.63 -2.42 -14.90 16 22 C 0.52 12.92 7.72 87.66 0.68 13.59 16 23 O -0.57 -20.36 15.55 16.00 0.25 -20.11 16 24 C 0.05 0.84 4.62 71.24 0.33 1.17 16 25 O -0.39 -8.35 9.52 -129.94 -1.24 -9.59 16 26 C 0.09 1.26 1.14 -10.80 -0.01 1.25 16 27 C -0.18 -1.55 8.25 71.98 0.59 -0.95 16 28 C -0.14 -1.77 8.84 71.98 0.64 -1.13 16 29 C -0.18 -1.73 8.25 71.98 0.59 -1.14 16 30 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 1.35 6.90 -2.39 -0.02 1.34 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.34 11.40 8.08 -89.69 -0.72 10.67 16 34 H 0.11 3.02 8.14 -2.39 -0.02 3.01 16 35 H 0.07 1.91 8.08 -2.39 -0.02 1.89 16 36 H 0.40 18.73 7.90 -92.71 -0.73 18.00 16 37 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 38 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.10 0.72 7.47 -2.39 -0.02 0.70 16 42 H 0.10 1.19 6.12 -2.39 -0.01 1.17 16 43 H 0.11 1.11 6.42 -2.39 -0.02 1.10 16 44 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 45 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.07 0.45 6.54 -2.39 -0.02 0.44 16 47 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 50 H 0.07 0.53 6.54 -2.39 -0.02 0.51 16 51 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 52 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -78.63 416.11 0.81 -77.82 By element: Atomic # 1 Polarization: 38.65 SS G_CDS: -0.53 Total: 38.11 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: 7.02 Total: 20.44 kcal Atomic # 7 Polarization: -110.04 SS G_CDS: -6.66 Total: -116.70 kcal Atomic # 8 Polarization: -63.39 SS G_CDS: -1.04 Total: -64.42 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -78.63 0.81 -77.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486076574.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.179 kcal (2) G-P(sol) polarization free energy of solvation -78.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds