Wall clock time and date at job start Wed Apr 1 2020 01:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.99381 * 2 1 4 4 C 1.54323 * 109.88392 * 238.90982 * 2 1 3 5 5 H 1.08993 * 110.72397 * 144.23131 * 4 2 1 6 6 N 1.46903 * 110.71949 * 21.13639 * 4 2 1 7 7 C 1.46896 * 110.99955 * 157.44360 * 6 4 2 8 8 C 1.50700 * 109.46942 * 179.97438 * 7 6 4 9 9 O 1.21293 * 120.00282 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00075 * 179.97438 * 8 7 6 11 11 C 1.37104 * 120.00173 * 180.02562 * 10 8 7 12 12 H 1.08002 * 119.99666 * 359.97438 * 11 10 8 13 13 C 1.38945 * 120.00001 * 180.27893 * 11 10 8 14 14 N 1.31414 * 119.99893 * 359.72318 * 13 11 10 15 15 Si 1.86801 * 119.99957 * 179.72309 * 13 11 10 16 16 H 1.48494 * 109.47230 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.46780 * 119.99924 * 15 13 11 18 18 H 1.48495 * 109.46909 * 239.99525 * 15 13 11 19 19 C 1.55156 * 103.10339 * 262.68594 * 4 2 1 20 20 C 1.54912 * 101.57907 * 324.58485 * 19 4 2 21 21 N 1.47317 * 109.85142 * 121.30379 * 2 1 3 22 22 C 1.34775 * 125.61259 * 300.41694 * 21 2 1 23 23 O 1.21283 * 120.00574 * 0.20271 * 22 21 2 24 24 C 1.50711 * 119.99638 * 180.20350 * 22 21 2 25 25 O 1.42904 * 109.46883 * 180.02562 * 24 22 21 26 26 C 1.42902 * 113.99664 * 179.97438 * 25 24 22 27 27 C 1.52998 * 109.47230 * 60.00060 * 26 25 24 28 28 C 1.52998 * 109.46796 * 180.02562 * 26 25 24 29 29 C 1.53003 * 109.46836 * 299.99793 * 26 25 24 30 30 H 1.09003 * 109.47014 * 181.09134 * 1 2 3 31 31 H 1.08996 * 109.47126 * 301.09291 * 1 2 3 32 32 H 1.08997 * 109.47598 * 61.09217 * 1 2 3 33 33 H 1.00907 * 111.00029 * 281.39873 * 6 4 2 34 34 H 1.08994 * 109.47346 * 60.00149 * 7 6 4 35 35 H 1.08998 * 109.47279 * 299.99821 * 7 6 4 36 36 H 0.97000 * 120.00140 * 0.02562 * 10 8 7 37 37 H 0.97004 * 119.99542 * 180.02562 * 14 13 11 38 38 H 1.09003 * 111.00329 * 82.65315 * 19 4 2 39 39 H 1.09000 * 111.00585 * 206.51175 * 19 4 2 40 40 H 1.09000 * 110.37000 * 155.84876 * 20 19 4 41 41 H 1.09001 * 110.36494 * 278.17255 * 20 19 4 42 42 H 1.08997 * 109.46844 * 299.99616 * 24 22 21 43 43 H 1.08993 * 109.47017 * 60.00225 * 24 22 21 44 44 H 1.08993 * 109.47156 * 59.99498 * 27 26 25 45 45 H 1.08998 * 109.47001 * 180.02562 * 27 26 25 46 46 H 1.09004 * 109.47090 * 299.99585 * 27 26 25 47 47 H 1.08999 * 109.47709 * 59.99663 * 28 26 25 48 48 H 1.09000 * 109.47302 * 180.02562 * 28 26 25 49 49 H 1.09004 * 109.47063 * 299.99757 * 28 26 25 50 50 H 1.09001 * 109.46925 * 60.00300 * 29 26 25 51 51 H 1.09006 * 109.46837 * 180.02562 * 29 26 25 52 52 H 1.08999 * 109.47082 * 299.99977 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7494 -1.2428 5 1 2.9638 -0.2812 -1.6201 6 7 1.0264 -0.8026 -2.2904 7 6 1.6322 -1.0083 -3.6128 8 6 0.5490 -1.0580 -4.6593 9 8 -0.6134 -0.9347 -4.3354 10 7 0.8717 -1.2395 -5.9552 11 6 -0.1138 -1.2842 -6.9073 12 1 -1.1487 -1.1744 -6.6188 13 6 0.2186 -1.4771 -8.2426 14 7 1.4779 -1.6113 -8.5935 15 14 -1.1247 -1.5457 -9.5389 16 1 -2.4485 -1.3698 -8.8897 17 1 -0.9111 -0.4613 -10.5308 18 1 -1.0820 -2.8611 -10.2267 19 6 2.3554 -2.1700 -0.6960 20 6 2.8598 -1.8525 0.7339 21 7 2.0302 -0.7199 1.1839 22 6 1.7750 -0.3940 2.4665 23 8 1.0759 0.5637 2.7213 24 6 2.3583 -1.2198 3.5842 25 8 1.9465 -0.6787 4.8411 26 6 2.4474 -1.3925 5.9732 27 6 3.9772 -1.3726 5.9526 28 6 1.9455 -0.7290 7.2572 29 6 1.9554 -2.8403 5.9219 30 1 -0.3633 -1.0275 0.0196 31 1 -0.3633 0.5307 0.8800 32 1 -0.3634 0.4967 -0.8996 33 1 0.3431 -1.5177 -2.0905 34 1 2.1845 -1.9480 -3.6172 35 1 2.3128 -0.1858 -3.8326 36 1 1.8012 -1.3385 -6.2143 37 1 1.7099 -1.7456 -9.5258 38 1 1.4501 -2.7764 -0.6653 39 1 3.1317 -2.6590 -1.2845 40 1 2.7140 -2.7127 1.3873 41 1 3.9114 -1.5668 0.7104 42 1 2.0059 -2.2477 3.4985 43 1 3.4462 -1.2020 3.5195 44 1 4.3276 -0.3412 5.9891 45 1 4.3592 -1.9174 6.8159 46 1 4.3344 -1.8456 5.0378 47 1 0.8557 -0.7434 7.2717 48 1 2.3280 -1.2731 8.1208 49 1 2.2957 0.3026 7.2940 50 1 2.3126 -3.3132 5.0070 51 1 2.3372 -3.3846 6.7857 52 1 0.8656 -2.8544 5.9366 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486076576.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:47 Heat of formation + Delta-G solvation = -111.592125 kcal Electronic energy + Delta-G solvation = -30145.452158 eV Core-core repulsion = 25952.224991 eV Total energy + Delta-G solvation = -4193.227167 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.59011 -39.39152 -38.35494 -37.59970 -34.77569 -33.85068 -33.78729 -31.46604 -31.21368 -30.80465 -28.54750 -27.88513 -27.30228 -26.52786 -25.18529 -23.82049 -23.11337 -20.82692 -20.19654 -19.36006 -19.08340 -17.97305 -17.62565 -16.82794 -16.50043 -16.02125 -15.92843 -15.70168 -15.26154 -14.84465 -14.56082 -14.47172 -14.15036 -13.86728 -13.75676 -13.67664 -13.55107 -13.12972 -12.89212 -12.79073 -12.66753 -12.47298 -12.38437 -12.23540 -12.20852 -12.20339 -12.16965 -11.71118 -11.56749 -11.50309 -11.43550 -11.07502 -11.05347 -10.87789 -10.78155 -10.35464 -10.24148 -9.98845 -9.76366 -9.53837 -8.82027 -8.49976 -8.09909 -7.97932 -6.43802 -3.84516 2.40956 2.46482 3.15259 3.26185 3.33501 3.48295 3.88059 4.00346 4.16334 4.21837 4.34357 4.37097 4.42612 4.55103 4.65496 4.70126 4.79547 4.87096 5.01714 5.03122 5.09976 5.10684 5.12577 5.20969 5.25198 5.25711 5.28500 5.40157 5.40715 5.49459 5.57167 5.57565 5.62603 5.74919 5.79929 5.81934 5.83178 5.84842 5.95091 6.15348 6.24039 6.40728 6.61139 6.79413 7.13502 7.33487 7.53837 7.56282 8.04123 8.04718 8.58927 9.16193 9.52087 10.03281 10.73923 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.036078 B = 0.001692 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.919218 B =16543.078768 C =16811.191838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.147 3.853 3 H 0.079 0.921 4 C 0.082 3.918 5 H 0.094 0.906 6 N -0.653 5.653 7 C 0.050 3.950 8 C 0.440 3.560 9 O -0.582 6.582 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.104 0.896 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.929 3.071 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.282 1.282 19 C -0.167 4.167 20 C 0.100 3.900 21 N -0.617 5.617 22 C 0.530 3.470 23 O -0.515 6.515 24 C 0.044 3.956 25 O -0.351 6.351 26 C 0.104 3.896 27 C -0.180 4.180 28 C -0.137 4.137 29 C -0.180 4.180 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.354 0.646 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.059 0.941 47 H 0.065 0.935 48 H 0.071 0.929 49 H 0.065 0.935 50 H 0.059 0.941 51 H 0.069 0.931 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.237 -4.448 26.768 29.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.044 3.956 3 H 0.097 0.903 4 C -0.030 4.030 5 H 0.113 0.887 6 N -0.285 5.285 7 C -0.082 4.082 8 C 0.225 3.775 9 O -0.466 6.466 10 N -0.200 5.200 11 C -0.428 4.428 12 H 0.122 0.878 13 C -0.179 4.179 14 N -0.543 5.543 15 Si 0.756 3.244 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.208 1.208 19 C -0.207 4.207 20 C -0.023 4.023 21 N -0.355 5.355 22 C 0.317 3.683 23 O -0.389 6.389 24 C -0.035 4.035 25 O -0.269 6.269 26 C 0.065 3.935 27 C -0.237 4.237 28 C -0.194 4.194 29 C -0.238 4.238 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.176 0.824 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.078 0.922 47 H 0.084 0.916 48 H 0.090 0.910 49 H 0.084 0.916 50 H 0.078 0.922 51 H 0.088 0.912 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.947 -2.992 26.963 28.565 hybrid contribution 0.649 -1.498 -0.964 1.896 sum 9.597 -4.490 25.998 28.074 Atomic orbital electron populations 1.21949 0.93545 1.02093 1.03515 1.21574 0.96010 0.95469 0.82533 0.90294 1.22622 0.95124 0.93805 0.91407 0.88745 1.60051 1.13701 1.55059 0.99703 1.21711 0.96611 1.00596 0.89289 1.19790 0.89668 0.84488 0.83508 1.90536 1.20058 1.55113 1.80921 1.41866 1.10006 1.63181 1.04970 1.19760 0.90502 1.46303 0.86276 0.87844 1.25259 0.97177 0.97268 0.98233 1.69621 1.16396 1.49674 1.18618 0.85800 0.80756 0.77702 0.80100 1.19207 1.20730 1.20797 1.23586 1.02696 0.99001 0.95372 1.22292 0.94990 0.89034 0.96028 1.48633 1.51086 1.30817 1.04923 1.19827 0.81281 0.85279 0.81922 1.90733 1.37181 1.28242 1.82734 1.22190 0.99546 0.97185 0.84611 1.88111 1.73294 1.53768 1.11749 1.21602 0.93059 0.91719 0.87128 1.22455 0.95591 1.03115 1.02586 1.21743 1.02283 1.01302 0.94096 1.22462 1.02617 0.96141 1.02567 0.93292 0.92105 0.89303 0.82446 0.93731 0.89468 0.77482 0.91934 0.90117 0.89523 0.90802 0.90979 0.90336 0.90331 0.91464 0.91254 0.92230 0.91568 0.91009 0.91603 0.92236 0.91248 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.22 37.16 0.31 -1.86 16 2 C 0.15 1.81 3.50 -66.79 -0.23 1.58 16 3 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 4 C 0.08 0.92 3.11 -65.88 -0.21 0.71 16 5 H 0.09 0.97 7.86 -51.93 -0.41 0.56 16 6 N -0.65 -9.65 4.44 -106.06 -0.47 -10.13 16 7 C 0.05 0.82 6.04 -4.98 -0.03 0.79 16 8 C 0.44 10.02 7.82 -10.98 -0.09 9.94 16 9 O -0.58 -15.44 15.78 5.55 0.09 -15.36 16 10 N -0.56 -13.93 5.29 -10.96 -0.06 -13.99 16 11 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 12 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -24.19 13.05 55.50 0.72 -23.46 16 15 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 16 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 19 C -0.17 -1.43 6.67 -24.58 -0.16 -1.59 16 20 C 0.10 0.74 6.69 -2.53 -0.02 0.72 16 21 N -0.62 -6.68 3.09 -162.79 -0.50 -7.18 16 22 C 0.53 6.70 7.71 -10.98 -0.08 6.61 16 23 O -0.51 -8.81 15.41 -14.35 -0.22 -9.03 16 24 C 0.04 0.41 4.62 36.01 0.17 0.57 16 25 O -0.35 -3.88 9.52 -55.14 -0.52 -4.40 16 26 C 0.10 0.77 1.14 -90.62 -0.10 0.67 16 27 C -0.18 -1.03 8.25 37.16 0.31 -0.72 16 28 C -0.14 -0.91 8.84 37.16 0.33 -0.58 16 29 C -0.18 -1.07 8.25 37.16 0.31 -0.76 16 30 H 0.05 0.67 7.93 -51.93 -0.41 0.26 16 31 H 0.06 0.95 6.77 -51.93 -0.35 0.60 16 32 H 0.09 1.39 7.40 -51.93 -0.38 1.00 16 33 H 0.35 5.52 7.36 -39.29 -0.29 5.24 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 1.31 8.08 -51.93 -0.42 0.89 16 36 H 0.39 9.22 7.90 -40.82 -0.32 8.90 16 37 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 38 H 0.08 0.75 7.79 -51.93 -0.40 0.35 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.41 7.48 -51.93 -0.39 0.02 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.57 6.12 -51.93 -0.32 0.25 16 43 H 0.08 0.55 6.42 -51.93 -0.33 0.21 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.06 0.30 6.54 -51.93 -0.34 -0.04 16 47 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.06 0.31 6.54 -51.93 -0.34 -0.03 16 51 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 52 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 412.71 15.07 6.22 6.22 Total: -1.00 -33.99 412.71 -8.39 -42.38 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -8.87 Total: 10.90 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 0.25 Total: 8.19 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.31 Total: -54.76 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -0.66 Total: -28.79 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.99 -8.39 -42.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486076576.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.208 kcal (2) G-P(sol) polarization free energy of solvation -33.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds