Wall clock time and date at job start Wed Apr 1 2020 00:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42897 * 114.00017 * 2 1 4 4 C 1.52996 * 109.47214 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47160 * 180.02562 * 4 3 2 6 6 C 1.53008 * 109.47045 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47335 * 180.02562 * 6 5 4 8 8 O 1.21290 * 119.99695 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00152 * 179.97438 * 7 6 5 10 10 C 1.47418 * 125.64706 * 0.02562 * 9 7 6 11 11 C 1.54907 * 104.83006 * 204.09163 * 10 9 7 12 12 H 1.08999 * 111.00683 * 81.10657 * 11 10 9 13 13 N 1.46901 * 111.00481 * 204.91739 * 11 10 9 14 14 C 1.46902 * 110.99844 * 273.54527 * 13 11 10 15 15 C 1.50702 * 109.47027 * 179.97438 * 14 13 11 16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72353 * 15 14 13 18 18 C 1.37101 * 120.00327 * 180.27606 * 17 15 14 19 19 H 1.08001 * 119.99426 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00412 * 180.02562 * 18 17 15 21 21 N 1.31414 * 120.00005 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00057 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47191 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46534 * 120.00189 * 22 20 18 25 25 H 1.48498 * 109.47283 * 240.00132 * 22 20 18 26 26 C 1.55154 * 101.58536 * 322.99172 * 11 10 9 27 27 C 1.47021 * 125.64444 * 179.97438 * 9 7 6 28 28 H 1.09005 * 109.88196 * 298.38959 * 27 9 7 29 29 C 1.52994 * 109.88381 * 59.40538 * 27 9 7 30 30 H 1.09001 * 109.47148 * 300.00147 * 1 2 3 31 31 H 1.09002 * 109.46672 * 59.99592 * 1 2 3 32 32 H 1.08998 * 109.47019 * 179.97438 * 1 2 3 33 33 H 1.09010 * 109.47400 * 59.99977 * 3 2 1 34 34 H 1.09004 * 109.47584 * 300.00113 * 3 2 1 35 35 H 1.08999 * 109.46890 * 60.00294 * 4 3 2 36 36 H 1.09008 * 109.47329 * 300.00149 * 4 3 2 37 37 H 1.08999 * 109.47143 * 60.00248 * 5 4 3 38 38 H 1.08998 * 109.47335 * 299.99778 * 5 4 3 39 39 H 1.08992 * 109.47053 * 59.99573 * 6 5 4 40 40 H 1.08998 * 109.46635 * 299.99915 * 6 5 4 41 41 H 1.08997 * 110.36783 * 85.25407 * 10 9 7 42 42 H 1.09000 * 110.46457 * 322.97801 * 10 9 7 43 43 H 1.00895 * 111.00207 * 37.49870 * 13 11 10 44 44 H 1.09004 * 109.47131 * 60.00016 * 14 13 11 45 45 H 1.09000 * 109.47732 * 300.00127 * 14 13 11 46 46 H 0.97000 * 120.00317 * 0.28382 * 17 15 14 47 47 H 0.96996 * 120.00330 * 179.97438 * 21 20 18 48 48 H 1.08998 * 110.72660 * 153.86573 * 26 11 10 49 49 H 1.09004 * 110.71821 * 277.14111 * 26 11 10 50 50 H 1.09001 * 109.47363 * 58.54698 * 29 27 9 51 51 H 1.09008 * 109.46883 * 178.54153 * 29 27 9 52 52 H 1.08994 * 109.47391 * 298.54015 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5824 0.0013 6 6 5.6831 2.4615 0.0013 7 6 6.2961 3.8382 0.0026 8 8 5.5832 4.8195 0.0039 9 7 7.6365 3.9791 0.0033 10 6 8.6161 2.8775 0.0025 11 6 9.9008 3.4889 0.6150 12 1 9.8443 3.5074 1.7033 13 7 11.0959 2.7627 0.1650 14 6 11.3659 1.6064 1.0299 15 6 12.5957 0.8875 0.5381 16 8 13.1892 1.2983 -0.4368 17 7 13.0396 -0.2084 1.1850 18 6 14.1617 -0.8591 0.7409 19 1 14.6901 -0.4933 -0.1271 20 6 14.6191 -1.9891 1.4075 21 7 13.9759 -2.4345 2.4634 22 14 16.1475 -2.8761 0.8020 23 1 16.6821 -2.1798 -0.3957 24 1 17.1759 -2.8777 1.8733 25 1 15.7999 -4.2757 0.4475 26 6 9.8709 4.9261 0.0312 27 6 8.3637 5.2568 0.0040 28 1 8.1239 5.8203 -0.8978 29 6 7.9840 6.0709 1.2425 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6887 1.8464 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.8574 0.6436 -0.8891 36 1 3.8568 0.6438 0.8909 37 1 3.8358 3.1230 0.8913 38 1 3.8366 3.1235 -0.8887 39 1 6.0047 1.9210 -0.8888 40 1 6.0046 1.9202 0.8911 41 1 8.8054 2.5390 -1.0162 42 1 8.2598 2.0502 0.6162 43 1 11.0054 2.4797 -0.7992 44 1 10.5139 0.9269 1.0047 45 1 11.5285 1.9473 2.0524 46 1 12.5653 -0.5368 1.9647 47 1 14.2949 -3.2236 2.9285 48 1 10.4059 5.6180 0.6817 49 1 10.2872 4.9420 -0.9761 50 1 8.2192 5.4986 2.1398 51 1 8.5460 7.0049 1.2496 52 1 6.9164 6.2895 1.2204 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486108877.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:42:06 Heat of formation + Delta-G solvation = -153.658313 kcal Electronic energy + Delta-G solvation = -29354.681231 eV Core-core repulsion = 25159.629937 eV Total energy + Delta-G solvation = -4195.051294 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.40207 -40.12644 -39.13577 -38.79958 -36.24602 -35.76848 -35.50318 -33.24362 -33.10272 -30.99386 -30.61902 -27.89791 -27.45457 -26.77178 -25.78491 -25.08844 -23.15385 -22.20811 -21.47427 -21.03127 -19.95624 -19.88980 -18.21230 -17.63483 -17.45822 -17.31460 -17.17607 -16.86472 -16.44957 -16.24971 -16.17489 -15.77853 -15.68928 -15.21638 -15.07217 -14.66594 -14.39272 -14.26388 -14.09890 -13.77811 -13.66432 -13.52352 -13.44586 -13.27888 -13.07285 -12.98554 -12.83604 -12.63895 -12.46879 -12.38702 -12.36860 -12.24751 -12.10668 -11.93501 -11.89907 -11.63897 -11.57798 -11.48711 -10.82821 -10.63676 -10.31213 -9.98292 -9.74059 -9.30826 -8.44606 -5.92670 1.38290 1.44105 1.57572 1.60802 1.89876 2.09254 2.31024 2.78445 2.92026 3.23406 3.39703 3.50525 3.72216 3.81079 3.91386 3.94341 4.04470 4.11542 4.26637 4.28019 4.32417 4.36090 4.37223 4.42246 4.48414 4.51459 4.52371 4.61066 4.65032 4.70460 4.72098 4.75661 4.76937 4.82360 4.84713 4.96200 4.97792 5.07480 5.12923 5.25449 5.30495 5.35621 5.44020 5.44973 5.91186 6.11794 6.21691 6.37679 6.50476 6.63052 7.13761 7.15930 7.60253 8.15484 8.72820 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.008963 B = 0.002018 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3123.294968 B =13869.855733 C =16601.369262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.057 3.943 4 C -0.113 4.113 5 C -0.092 4.092 6 C -0.133 4.133 7 C 0.523 3.477 8 O -0.579 6.579 9 N -0.611 5.611 10 C 0.068 3.932 11 C 0.083 3.917 12 H 0.104 0.896 13 N -0.664 5.664 14 C 0.064 3.936 15 C 0.438 3.562 16 O -0.624 6.624 17 N -0.574 5.574 18 C -0.332 4.332 19 H 0.079 0.921 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.990 3.010 23 H -0.274 1.274 24 H -0.273 1.273 25 H -0.272 1.272 26 C -0.110 4.110 27 C 0.132 3.868 28 H 0.067 0.933 29 C -0.155 4.155 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.095 0.905 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.349 0.651 44 H 0.075 0.925 45 H 0.106 0.894 46 H 0.397 0.603 47 H 0.277 0.723 48 H 0.095 0.905 49 H 0.079 0.921 50 H 0.059 0.941 51 H 0.079 0.921 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.023 9.209 -1.023 24.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C -0.019 4.019 4 C -0.151 4.151 5 C -0.130 4.130 6 C -0.172 4.172 7 C 0.314 3.686 8 O -0.459 6.459 9 N -0.345 5.345 10 C -0.057 4.057 11 C -0.028 4.028 12 H 0.122 0.878 13 N -0.296 5.296 14 C -0.068 4.068 15 C 0.225 3.775 16 O -0.510 6.510 17 N -0.211 5.211 18 C -0.461 4.461 19 H 0.097 0.903 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.814 3.186 23 H -0.198 1.198 24 H -0.198 1.198 25 H -0.197 1.197 26 C -0.148 4.148 27 C 0.029 3.971 28 H 0.085 0.915 29 C -0.213 4.213 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.114 0.886 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.094 0.906 42 H 0.113 0.887 43 H 0.169 0.831 44 H 0.093 0.907 45 H 0.124 0.876 46 H 0.231 0.769 47 H 0.086 0.914 48 H 0.114 0.886 49 H 0.097 0.903 50 H 0.078 0.922 51 H 0.098 0.902 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -22.484 10.065 -1.216 24.664 hybrid contribution -0.289 -1.009 -0.170 1.063 sum -22.773 9.056 -1.387 24.547 Atomic orbital electron populations 1.22917 0.79645 1.03760 1.00793 1.87832 1.21407 1.29047 1.95607 1.22621 0.94309 0.84211 1.00791 1.21466 0.92972 0.96961 1.03701 1.21126 0.92859 0.96136 1.02917 1.21693 0.96448 0.92927 1.06134 1.20915 0.80356 0.92438 0.74879 1.90667 1.60869 1.42349 1.51989 1.48596 1.04899 1.08333 1.72679 1.23296 0.89661 0.90587 1.02112 1.22797 0.85782 0.93730 1.00499 0.87805 1.60101 1.37009 1.25698 1.06779 1.21602 0.94451 0.92175 0.98565 1.20930 0.88718 0.82368 0.85458 1.90506 1.61608 1.68346 1.30574 1.41936 1.25728 1.24961 1.28478 1.19687 1.04700 1.08811 1.12930 0.90345 1.25991 1.01920 0.97454 0.95883 1.69667 1.41453 1.25279 1.19677 0.84907 0.77575 0.77915 0.78177 1.19829 1.19797 1.19688 1.22669 0.92942 0.96272 1.02934 1.21622 0.91457 0.85151 0.98887 0.91487 1.22068 1.01774 1.00399 0.97062 0.93246 0.93273 0.88646 0.92751 0.92801 0.90834 0.90732 0.91809 0.91953 0.87344 0.87054 0.90593 0.88670 0.83079 0.90723 0.87608 0.76910 0.91369 0.88624 0.90275 0.92239 0.90220 0.93330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 11.01 113.37 1.25 1.53 16 2 O -0.42 -7.49 10.70 -148.98 -1.59 -9.09 16 3 C 0.06 0.83 5.94 71.98 0.43 1.26 16 4 C -0.11 -1.56 5.58 30.59 0.17 -1.39 16 5 C -0.09 -1.39 4.50 30.60 0.14 -1.25 16 6 C -0.13 -1.91 4.71 29.85 0.14 -1.77 16 7 C 0.52 11.01 7.63 87.66 0.67 11.68 16 8 O -0.58 -16.25 14.87 -3.06 -0.05 -16.30 16 9 N -0.61 -11.51 3.08 -788.07 -2.43 -13.94 16 10 C 0.07 1.10 6.27 86.86 0.54 1.65 16 11 C 0.08 1.55 3.32 46.31 0.15 1.70 16 12 H 0.10 1.81 7.92 -2.39 -0.02 1.79 16 13 N -0.66 -17.45 6.00 -488.40 -2.93 -20.39 16 14 C 0.06 1.88 6.04 85.56 0.52 2.40 16 15 C 0.44 19.38 7.82 87.66 0.69 20.06 16 16 O -0.62 -32.84 15.78 -3.07 -0.05 -32.88 16 17 N -0.57 -27.99 5.29 -306.98 -1.62 -29.62 16 18 C -0.33 -18.29 9.68 84.04 0.81 -17.48 16 19 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 20 C -0.01 -0.66 5.50 84.92 0.47 -0.20 16 21 N -0.92 -48.36 13.05 21.66 0.28 -48.08 16 22 Si 0.99 42.08 29.55 68.60 2.03 44.11 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 26 C -0.11 -1.93 6.19 31.78 0.20 -1.74 16 27 C 0.13 2.47 3.49 45.34 0.16 2.63 16 28 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 29 C -0.16 -2.83 9.07 71.98 0.65 -2.17 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 38 H 0.06 1.05 8.10 -2.39 -0.02 1.03 16 39 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.11 1.26 7.85 -2.39 -0.02 1.24 16 41 H 0.08 1.23 7.80 -2.39 -0.02 1.21 16 42 H 0.10 1.24 7.48 -2.39 -0.02 1.22 16 43 H 0.35 9.68 8.00 -89.70 -0.72 8.97 16 44 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 45 H 0.11 2.79 8.09 -2.39 -0.02 2.77 16 46 H 0.40 18.28 7.90 -92.71 -0.73 17.54 16 47 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16 48 H 0.10 1.57 7.83 -2.39 -0.02 1.55 16 49 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 50 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 51 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 52 H 0.05 1.10 6.73 -2.39 -0.02 1.09 16 Total: -1.00 -71.10 423.51 0.08 -71.01 By element: Atomic # 1 Polarization: 38.77 SS G_CDS: -0.54 Total: 38.23 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: 6.98 Total: 16.92 kcal Atomic # 7 Polarization: -105.32 SS G_CDS: -6.70 Total: -112.02 kcal Atomic # 8 Polarization: -56.58 SS G_CDS: -1.69 Total: -58.26 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -71.10 0.08 -71.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486108877.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.644 kcal (2) G-P(sol) polarization free energy of solvation -71.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds