Wall clock time and date at job start Wed Apr 1 2020 00:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47033 * 2 1 4 4 O 1.21283 * 119.99943 * 0.02562 * 3 2 1 5 5 N 1.34776 * 119.99898 * 180.02562 * 3 2 1 6 6 C 1.47424 * 125.65113 * 359.97438 * 5 3 2 7 7 C 1.54903 * 104.83379 * 155.90800 * 6 5 3 8 8 C 1.55151 * 101.58297 * 37.00889 * 7 6 5 9 9 H 1.09002 * 110.72321 * 83.03781 * 8 7 6 10 10 C 1.50703 * 110.71997 * 206.13384 * 8 7 6 11 11 O 1.21283 * 119.99739 * 93.45393 * 10 8 7 12 12 N 1.34777 * 120.00108 * 273.45029 * 10 8 7 13 13 C 1.46494 * 119.99980 * 355.14347 * 12 10 8 14 14 C 1.46504 * 119.99999 * 175.13473 * 12 10 8 15 15 C 1.52999 * 109.46462 * 90.00651 * 14 12 10 16 16 H 1.08996 * 109.47961 * 59.99977 * 15 14 12 17 17 O 1.42906 * 109.47265 * 299.99763 * 15 14 12 18 18 C 1.53004 * 109.47148 * 179.97438 * 15 14 12 19 19 N 1.46492 * 109.47485 * 184.99650 * 18 15 14 20 20 C 1.46495 * 120.00314 * 269.99993 * 19 18 15 21 21 C 1.36938 * 119.99830 * 89.99824 * 19 18 15 22 22 H 1.08002 * 120.00109 * 332.95628 * 21 19 18 23 23 C 1.38813 * 120.00117 * 152.94865 * 21 19 18 24 24 N 1.31627 * 119.99899 * 349.82352 * 23 21 19 25 25 Si 1.86794 * 120.00141 * 169.82004 * 23 21 19 26 26 H 1.48502 * 109.47314 * 179.97438 * 25 23 21 27 27 H 1.48496 * 109.47250 * 299.99806 * 25 23 21 28 28 H 1.48498 * 109.47132 * 60.00377 * 25 23 21 29 29 C 1.47318 * 125.61363 * 180.19960 * 5 3 2 30 30 H 1.09006 * 109.47006 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46989 * 299.99556 * 1 2 3 32 32 H 1.08994 * 109.47459 * 60.00300 * 1 2 3 33 33 H 1.08999 * 109.46789 * 240.00061 * 2 1 3 34 34 H 1.08995 * 109.47456 * 120.00256 * 2 1 3 35 35 H 1.08999 * 110.36460 * 37.06732 * 6 5 3 36 36 H 1.09004 * 110.36145 * 274.74588 * 6 5 3 37 37 H 1.08996 * 111.00700 * 278.93112 * 7 6 5 38 38 H 1.09000 * 111.03867 * 155.09543 * 7 6 5 39 39 H 1.09002 * 109.47472 * 274.92869 * 13 12 10 40 40 H 1.08999 * 109.47221 * 34.92972 * 13 12 10 41 41 H 1.08998 * 109.47214 * 154.92953 * 13 12 10 42 42 H 1.09000 * 109.47182 * 330.00814 * 14 12 10 43 43 H 1.08993 * 109.47255 * 210.00281 * 14 12 10 44 44 H 0.96701 * 113.99718 * 300.00367 * 17 15 14 45 45 H 1.09005 * 109.46745 * 64.99687 * 18 15 14 46 46 H 1.08995 * 109.47113 * 305.00426 * 18 15 14 47 47 H 1.08993 * 109.47474 * 272.20145 * 20 19 18 48 48 H 1.09001 * 109.47298 * 32.20420 * 20 19 18 49 49 H 1.09007 * 109.47578 * 152.20320 * 20 19 18 50 50 H 0.97003 * 119.99707 * 180.02562 * 24 23 21 51 51 H 1.08998 * 110.06383 * 61.67898 * 29 5 3 52 52 H 1.09001 * 109.85567 * 300.41801 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3426 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.4210 0.6463 -0.0006 7 6 5.6534 1.3578 -0.6125 8 6 5.5100 2.7876 -0.0274 9 1 5.9266 2.8363 0.9787 10 6 6.1719 3.8003 -0.9260 11 8 5.5215 4.3779 -1.7711 12 7 7.4867 4.0642 -0.7904 13 6 8.2491 3.4472 0.2978 14 6 8.1533 4.9678 -1.7313 15 6 8.0726 6.4021 -1.2048 16 1 8.5645 6.4611 -0.2339 17 8 6.7020 6.7831 -1.0682 18 6 8.7693 7.3459 -2.1870 19 7 8.7971 8.6995 -1.6274 20 6 7.6958 9.6268 -1.8980 21 6 9.8526 9.0980 -0.8513 22 1 10.4188 8.3670 -0.2931 23 6 10.1951 10.4414 -0.7821 24 7 9.6428 11.3047 -1.6081 25 14 11.4396 11.0241 0.4831 26 1 11.6301 12.4909 0.3511 27 1 10.9432 10.7098 1.8469 28 1 12.7353 10.3349 0.2569 29 6 3.9819 3.0013 0.0036 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5137 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 4.1299 -0.2048 -0.6162 36 1 4.6365 0.3230 1.0179 37 1 5.5953 1.3733 -1.7007 38 1 6.5803 0.8907 -0.2795 39 1 8.1433 4.0474 1.2015 40 1 7.8700 2.4421 0.4827 41 1 9.3014 3.3929 0.0188 42 1 7.6613 4.9090 -2.7021 43 1 9.1986 4.6773 -1.8354 44 1 6.2015 6.7540 -1.8951 45 1 8.2247 7.3542 -3.1312 46 1 9.7895 7.0028 -2.3590 47 1 7.8936 10.1655 -2.8246 48 1 6.7652 9.0675 -1.9945 49 1 7.6089 10.3376 -1.0761 50 1 9.8824 12.2435 -1.5600 51 1 3.7015 3.5427 0.9071 52 1 3.6678 3.5598 -0.8782 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486355808.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:46 Heat of formation + Delta-G solvation = -92.749144 kcal Electronic energy + Delta-G solvation = -30859.096566 eV Core-core repulsion = 26666.686492 eV Total energy + Delta-G solvation = -4192.410074 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.81371 -39.68569 -37.75931 -36.91257 -35.40206 -34.49700 -33.25342 -32.07690 -31.29204 -29.84378 -29.35903 -27.04836 -26.29987 -25.68072 -24.96079 -23.19206 -22.65364 -21.39897 -20.52359 -19.48087 -19.08579 -17.82261 -17.51366 -16.84445 -16.33180 -16.00317 -15.82094 -15.72015 -15.05733 -14.81487 -14.76433 -14.54634 -14.00575 -13.86824 -13.68508 -13.51637 -13.27605 -13.15872 -13.02259 -12.84853 -12.67581 -12.61044 -12.30924 -12.20033 -11.99574 -11.81751 -11.71369 -11.54943 -11.41222 -11.24620 -11.07746 -10.85105 -10.66774 -10.49956 -10.26832 -10.09636 -10.03759 -9.89221 -9.79907 -9.57793 -8.94503 -8.61470 -8.36554 -6.57241 -5.68946 -3.17681 2.38326 2.49505 2.60797 2.99300 3.39144 3.44730 3.45576 3.96905 4.01154 4.28880 4.42409 4.51396 4.63756 4.68762 4.73266 4.82681 4.87142 4.89234 4.99790 5.06298 5.13767 5.17080 5.22206 5.34841 5.42216 5.45811 5.47542 5.49601 5.55888 5.58965 5.62549 5.73161 5.82615 5.86257 5.89319 5.95606 6.03463 6.11531 6.49306 6.63049 6.78773 7.01086 7.18065 7.33781 7.50882 7.76809 7.84939 7.90241 8.15512 8.40196 8.48011 9.28934 9.91655 10.43823 11.36283 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.022518 B = 0.002093 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.174599 B =13372.809197 C =13869.611558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.138 4.138 3 C 0.524 3.476 4 O -0.535 6.535 5 N -0.622 5.622 6 C 0.101 3.899 7 C -0.118 4.118 8 C -0.122 4.122 9 H 0.106 0.894 10 C 0.530 3.470 11 O -0.527 6.527 12 N -0.606 5.606 13 C 0.076 3.924 14 C 0.083 3.917 15 C 0.070 3.930 16 H 0.091 0.909 17 O -0.547 6.547 18 C 0.126 3.874 19 N -0.591 5.591 20 C 0.167 3.833 21 C -0.256 4.256 22 H 0.062 0.938 23 C 0.003 3.997 24 N -0.905 5.905 25 Si 0.905 3.095 26 H -0.290 1.290 27 H -0.284 1.284 28 H -0.283 1.283 29 C 0.119 3.881 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.366 0.634 45 H 0.038 0.962 46 H 0.052 0.948 47 H 0.016 0.984 48 H 0.002 0.998 49 H 0.046 0.954 50 H 0.253 0.747 51 H 0.073 0.927 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.181 -28.983 3.404 30.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.178 4.178 3 C 0.313 3.687 4 O -0.412 6.412 5 N -0.357 5.357 6 C -0.022 4.022 7 C -0.157 4.157 8 C -0.144 4.144 9 H 0.124 0.876 10 C 0.316 3.684 11 O -0.403 6.403 12 N -0.338 5.338 13 C -0.067 4.067 14 C -0.041 4.041 15 C 0.007 3.993 16 H 0.109 0.891 17 O -0.351 6.351 18 C -0.003 4.003 19 N -0.313 5.313 20 C 0.023 3.977 21 C -0.386 4.386 22 H 0.080 0.920 23 C -0.195 4.195 24 N -0.550 5.550 25 Si 0.735 3.265 26 H -0.216 1.216 27 H -0.211 1.211 28 H -0.210 1.210 29 C -0.004 4.004 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.213 0.787 45 H 0.057 0.943 46 H 0.071 0.929 47 H 0.034 0.966 48 H 0.021 0.979 49 H 0.065 0.935 50 H 0.063 0.937 51 H 0.091 0.909 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.838 -27.878 3.548 29.460 hybrid contribution 0.971 0.312 0.309 1.066 sum -7.868 -27.566 3.857 28.925 Atomic orbital electron populations 1.21548 0.92888 1.01604 1.03546 1.21614 0.98650 0.93437 1.04133 1.20498 0.80191 0.92006 0.75984 1.90740 1.54233 1.46753 1.49447 1.48613 1.05245 1.07890 1.73997 1.22349 0.86916 0.91747 1.01169 1.22753 0.98323 0.92841 1.01759 1.22329 0.96249 0.95278 1.00592 0.87638 1.19949 0.81682 0.82447 0.84298 1.90670 1.62517 1.50847 1.36298 1.47674 1.08865 1.46638 1.30648 1.21849 0.96958 0.97570 0.90334 1.22428 0.97377 0.91222 0.93039 1.23218 0.83960 0.90350 1.01779 0.89066 1.86555 1.21315 1.90533 1.36709 1.21304 0.98277 0.87291 0.93461 1.43655 1.20976 1.08450 1.58236 1.20721 0.86018 0.91368 0.99631 1.19065 1.07650 0.91975 1.19939 0.91998 1.25113 0.98823 0.97122 0.98456 1.70052 1.45494 1.02351 1.37089 0.86343 0.81207 0.77575 0.81394 1.21620 1.21086 1.20968 1.21884 0.89500 0.84745 1.04234 0.92013 0.91917 0.91867 0.89003 0.89021 0.90063 0.90782 0.89774 0.88961 0.92292 0.91449 0.90625 0.90041 0.89964 0.78712 0.94348 0.92930 0.96602 0.97913 0.93478 0.93696 0.90874 0.88852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.20 37.16 0.34 -0.63 16 2 C -0.14 -0.89 5.43 -27.89 -0.15 -1.04 16 3 C 0.52 5.73 7.85 -10.99 -0.09 5.64 16 4 O -0.54 -8.33 16.31 5.55 0.09 -8.24 16 5 N -0.62 -5.92 3.33 -170.29 -0.57 -6.49 16 6 C 0.10 0.53 6.69 -2.53 -0.02 0.52 16 7 C -0.12 -0.69 6.32 -24.59 -0.16 -0.85 16 8 C -0.12 -1.09 2.33 -89.94 -0.21 -1.30 16 9 H 0.11 0.76 6.96 -51.93 -0.36 0.40 16 10 C 0.53 6.66 6.46 -10.98 -0.07 6.59 16 11 O -0.53 -8.62 13.63 -8.05 -0.11 -8.73 16 12 N -0.61 -6.95 2.83 -181.58 -0.51 -7.47 16 13 C 0.08 0.59 9.90 59.84 0.59 1.18 16 14 C 0.08 1.08 5.18 -4.04 -0.02 1.06 16 15 C 0.07 1.23 3.48 -26.73 -0.09 1.13 16 16 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 17 O -0.55 -10.68 10.84 -48.84 -0.53 -11.21 16 18 C 0.13 2.54 5.34 -4.04 -0.02 2.52 16 19 N -0.59 -15.22 2.88 -181.12 -0.52 -15.74 16 20 C 0.17 4.37 8.82 59.84 0.53 4.89 16 21 C -0.26 -7.13 9.62 -15.06 -0.14 -7.28 16 22 H 0.06 1.66 7.85 -52.49 -0.41 1.24 16 23 C 0.00 0.10 5.10 -17.43 -0.09 0.01 16 24 N -0.91 -27.11 10.86 55.49 0.60 -26.51 16 25 Si 0.90 22.09 29.57 -169.99 -5.03 17.07 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 29 C 0.12 1.36 6.43 -2.90 -0.02 1.34 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 32 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 33 H 0.09 0.42 7.85 -51.93 -0.41 0.02 16 34 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.28 7.48 -51.93 -0.39 -0.11 16 36 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 37 H 0.08 0.61 8.04 -51.93 -0.42 0.19 16 38 H 0.09 0.31 7.43 -51.93 -0.39 -0.08 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.33 5.85 -51.93 -0.30 0.03 16 41 H 0.07 0.50 7.84 -51.93 -0.41 0.10 16 42 H 0.08 1.12 7.49 -51.93 -0.39 0.73 16 43 H 0.08 0.90 7.86 -51.93 -0.41 0.49 16 44 H 0.37 6.73 8.31 45.56 0.38 7.11 16 45 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 46 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 47 H 0.02 0.44 7.68 -51.93 -0.40 0.04 16 48 H 0.00 0.06 7.08 -51.93 -0.37 -0.31 16 49 H 0.05 1.34 7.05 -51.93 -0.37 0.97 16 50 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 51 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 52 H 0.09 1.37 6.74 -51.93 -0.35 1.02 16 LS Contribution 410.66 15.07 6.19 6.19 Total: -1.00 -37.05 410.66 -8.33 -45.38 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -8.33 Total: 1.96 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: 0.38 Total: 13.79 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: -1.00 Total: -56.21 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.55 Total: -28.18 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -37.05 -8.33 -45.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486355808.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.370 kcal (2) G-P(sol) polarization free energy of solvation -37.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds