Wall clock time and date at job start Wed Apr 1 2020 00:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47033 * 2 1 4 4 O 1.21283 * 119.99943 * 0.02562 * 3 2 1 5 5 N 1.34776 * 119.99898 * 180.02562 * 3 2 1 6 6 C 1.47424 * 125.65113 * 359.97438 * 5 3 2 7 7 C 1.54903 * 104.83379 * 155.90800 * 6 5 3 8 8 C 1.55151 * 101.58297 * 37.00889 * 7 6 5 9 9 H 1.09002 * 110.72321 * 83.03781 * 8 7 6 10 10 C 1.50703 * 110.71997 * 206.13384 * 8 7 6 11 11 O 1.21283 * 119.99739 * 93.45393 * 10 8 7 12 12 N 1.34777 * 120.00108 * 273.45029 * 10 8 7 13 13 C 1.46494 * 119.99980 * 355.14347 * 12 10 8 14 14 C 1.46504 * 119.99999 * 175.13473 * 12 10 8 15 15 C 1.52999 * 109.46462 * 90.00651 * 14 12 10 16 16 H 1.08996 * 109.47961 * 59.99977 * 15 14 12 17 17 O 1.42906 * 109.47265 * 299.99763 * 15 14 12 18 18 C 1.53004 * 109.47148 * 179.97438 * 15 14 12 19 19 N 1.46492 * 109.47485 * 184.99650 * 18 15 14 20 20 C 1.46495 * 120.00314 * 269.99993 * 19 18 15 21 21 C 1.36938 * 119.99830 * 89.99824 * 19 18 15 22 22 H 1.08002 * 120.00109 * 332.95628 * 21 19 18 23 23 C 1.38813 * 120.00117 * 152.94865 * 21 19 18 24 24 N 1.31627 * 119.99899 * 349.82352 * 23 21 19 25 25 Si 1.86794 * 120.00141 * 169.82004 * 23 21 19 26 26 H 1.48502 * 109.47314 * 179.97438 * 25 23 21 27 27 H 1.48496 * 109.47250 * 299.99806 * 25 23 21 28 28 H 1.48498 * 109.47132 * 60.00377 * 25 23 21 29 29 C 1.47318 * 125.61363 * 180.19960 * 5 3 2 30 30 H 1.09006 * 109.47006 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46989 * 299.99556 * 1 2 3 32 32 H 1.08994 * 109.47459 * 60.00300 * 1 2 3 33 33 H 1.08999 * 109.46789 * 240.00061 * 2 1 3 34 34 H 1.08995 * 109.47456 * 120.00256 * 2 1 3 35 35 H 1.08999 * 110.36460 * 37.06732 * 6 5 3 36 36 H 1.09004 * 110.36145 * 274.74588 * 6 5 3 37 37 H 1.08996 * 111.00700 * 278.93112 * 7 6 5 38 38 H 1.09000 * 111.03867 * 155.09543 * 7 6 5 39 39 H 1.09002 * 109.47472 * 274.92869 * 13 12 10 40 40 H 1.08999 * 109.47221 * 34.92972 * 13 12 10 41 41 H 1.08998 * 109.47214 * 154.92953 * 13 12 10 42 42 H 1.09000 * 109.47182 * 330.00814 * 14 12 10 43 43 H 1.08993 * 109.47255 * 210.00281 * 14 12 10 44 44 H 0.96701 * 113.99718 * 300.00367 * 17 15 14 45 45 H 1.09005 * 109.46745 * 64.99687 * 18 15 14 46 46 H 1.08995 * 109.47113 * 305.00426 * 18 15 14 47 47 H 1.08993 * 109.47474 * 272.20145 * 20 19 18 48 48 H 1.09001 * 109.47298 * 32.20420 * 20 19 18 49 49 H 1.09007 * 109.47578 * 152.20320 * 20 19 18 50 50 H 0.97003 * 119.99707 * 180.02562 * 24 23 21 51 51 H 1.08998 * 110.06383 * 61.67898 * 29 5 3 52 52 H 1.09001 * 109.85567 * 300.41801 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3426 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.4210 0.6463 -0.0006 7 6 5.6534 1.3578 -0.6125 8 6 5.5100 2.7876 -0.0274 9 1 5.9266 2.8363 0.9787 10 6 6.1719 3.8003 -0.9260 11 8 5.5215 4.3779 -1.7711 12 7 7.4867 4.0642 -0.7904 13 6 8.2491 3.4472 0.2978 14 6 8.1533 4.9678 -1.7313 15 6 8.0726 6.4021 -1.2048 16 1 8.5645 6.4611 -0.2339 17 8 6.7020 6.7831 -1.0682 18 6 8.7693 7.3459 -2.1870 19 7 8.7971 8.6995 -1.6274 20 6 7.6958 9.6268 -1.8980 21 6 9.8526 9.0980 -0.8513 22 1 10.4188 8.3670 -0.2931 23 6 10.1951 10.4414 -0.7821 24 7 9.6428 11.3047 -1.6081 25 14 11.4396 11.0241 0.4831 26 1 11.6301 12.4909 0.3511 27 1 10.9432 10.7098 1.8469 28 1 12.7353 10.3349 0.2569 29 6 3.9819 3.0013 0.0036 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5137 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 4.1299 -0.2048 -0.6162 36 1 4.6365 0.3230 1.0179 37 1 5.5953 1.3733 -1.7007 38 1 6.5803 0.8907 -0.2795 39 1 8.1433 4.0474 1.2015 40 1 7.8700 2.4421 0.4827 41 1 9.3014 3.3929 0.0188 42 1 7.6613 4.9090 -2.7021 43 1 9.1986 4.6773 -1.8354 44 1 6.2015 6.7540 -1.8951 45 1 8.2247 7.3542 -3.1312 46 1 9.7895 7.0028 -2.3590 47 1 7.8936 10.1655 -2.8246 48 1 6.7652 9.0675 -1.9945 49 1 7.6089 10.3376 -1.0761 50 1 9.8824 12.2435 -1.5600 51 1 3.7015 3.5427 0.9071 52 1 3.6678 3.5598 -0.8782 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486355808.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:45 Heat of formation + Delta-G solvation = -119.979444 kcal Electronic energy + Delta-G solvation = -30860.277361 eV Core-core repulsion = 26666.686492 eV Total energy + Delta-G solvation = -4193.590869 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.64550 -40.60465 -38.97941 -38.02193 -36.75613 -36.07451 -33.92791 -33.30662 -32.76966 -31.12011 -30.14633 -28.17092 -27.77066 -27.26755 -25.94070 -24.08161 -23.64213 -22.60087 -22.14474 -20.17577 -19.96590 -18.80930 -18.64641 -18.23499 -17.55855 -16.98533 -16.83331 -16.76506 -16.51724 -16.20292 -16.00584 -15.51900 -15.40218 -14.96303 -14.78408 -14.64007 -14.33181 -14.28021 -13.92758 -13.84528 -13.72332 -13.44671 -13.15369 -13.05618 -12.98739 -12.86390 -12.78672 -12.63859 -12.57850 -12.50799 -12.31843 -12.25708 -12.07027 -12.05401 -11.96424 -11.84388 -11.80960 -11.22613 -10.95553 -10.77638 -10.57772 -9.72173 -9.57158 -8.62997 -7.83163 -5.35222 1.44499 1.48504 1.54563 1.59277 1.59814 1.83137 2.17975 2.50355 3.30190 3.31006 3.42136 3.55838 3.63871 3.75144 3.78298 4.07920 4.16114 4.17512 4.22234 4.24715 4.27124 4.32377 4.35752 4.51392 4.57958 4.59031 4.68635 4.71238 4.75755 4.79245 4.85487 4.90160 4.91345 4.97193 4.98027 5.04467 5.05530 5.13238 5.21117 5.25075 5.34940 5.36229 5.56479 5.58474 5.64437 6.34271 6.42892 6.49939 6.91129 7.12338 7.14307 7.23162 7.85743 8.34148 9.20656 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.022518 B = 0.002093 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.174599 B =13372.809197 C =13869.611558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.127 4.127 3 C 0.510 3.490 4 O -0.599 6.599 5 N -0.622 5.622 6 C 0.097 3.903 7 C -0.109 4.109 8 C -0.112 4.112 9 H 0.132 0.868 10 C 0.520 3.480 11 O -0.576 6.576 12 N -0.605 5.605 13 C 0.067 3.933 14 C 0.094 3.906 15 C 0.082 3.918 16 H 0.076 0.924 17 O -0.566 6.566 18 C 0.123 3.877 19 N -0.611 5.611 20 C 0.186 3.814 21 C -0.262 4.262 22 H 0.073 0.927 23 C -0.058 4.058 24 N -0.942 5.942 25 Si 0.973 3.027 26 H -0.297 1.297 27 H -0.280 1.280 28 H -0.268 1.268 29 C 0.117 3.883 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.040 0.960 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.068 0.932 38 H 0.133 0.867 39 H 0.051 0.949 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.113 0.887 44 H 0.369 0.631 45 H 0.045 0.955 46 H 0.064 0.936 47 H -0.007 1.007 48 H 0.023 0.977 49 H 0.014 0.986 50 H 0.247 0.753 51 H 0.056 0.944 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.105 -33.575 4.860 34.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.302 3.698 4 O -0.480 6.480 5 N -0.355 5.355 6 C -0.023 4.023 7 C -0.147 4.147 8 C -0.133 4.133 9 H 0.150 0.850 10 C 0.309 3.691 11 O -0.455 6.455 12 N -0.336 5.336 13 C -0.074 4.074 14 C -0.030 4.030 15 C 0.020 3.980 16 H 0.094 0.906 17 O -0.371 6.371 18 C -0.004 4.004 19 N -0.334 5.334 20 C 0.040 3.960 21 C -0.392 4.392 22 H 0.090 0.910 23 C -0.253 4.253 24 N -0.589 5.589 25 Si 0.801 3.199 26 H -0.223 1.223 27 H -0.206 1.206 28 H -0.193 1.193 29 C -0.007 4.007 30 H 0.110 0.890 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.087 0.913 38 H 0.151 0.849 39 H 0.070 0.930 40 H 0.122 0.878 41 H 0.110 0.890 42 H 0.092 0.908 43 H 0.131 0.869 44 H 0.216 0.784 45 H 0.063 0.937 46 H 0.083 0.917 47 H 0.011 0.989 48 H 0.041 0.959 49 H 0.033 0.967 50 H 0.056 0.944 51 H 0.074 0.926 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.704 -32.574 5.025 33.635 hybrid contribution 0.291 1.706 -0.169 1.739 sum -6.412 -30.868 4.857 31.899 Atomic orbital electron populations 1.21567 0.93787 1.02801 1.01583 1.21683 0.97786 0.90345 1.06844 1.21513 0.80174 0.93417 0.74740 1.90707 1.55965 1.48952 1.52423 1.48775 1.05879 1.08091 1.72798 1.22741 0.84944 0.91086 1.03577 1.22842 1.00574 0.90478 1.00850 1.22304 0.93562 0.96214 1.01262 0.85037 1.20644 0.81870 0.82537 0.84072 1.90655 1.63695 1.52721 1.38459 1.47764 1.08836 1.45906 1.31104 1.22163 0.97701 0.98985 0.88575 1.22155 0.99253 0.88770 0.92838 1.22959 0.82404 0.92566 1.00088 0.90646 1.86525 1.22373 1.91011 1.37210 1.21526 0.99499 0.85153 0.94263 1.43904 1.20422 1.10320 1.58709 1.20397 0.87339 0.91119 0.97118 1.19478 1.07566 0.92356 1.19847 0.90966 1.25976 1.01214 0.97455 1.00633 1.70232 1.47368 1.02219 1.39035 0.85259 0.79331 0.76535 0.78811 1.22319 1.20637 1.19312 1.21689 0.91869 0.85861 1.01298 0.89035 0.93765 0.94112 0.86281 0.85776 0.87298 0.87702 0.91312 0.84903 0.93027 0.87792 0.88964 0.90769 0.86907 0.78389 0.93698 0.91734 0.98898 0.95903 0.96671 0.94352 0.92599 0.93290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.20 71.98 0.66 -1.17 16 2 C -0.13 -1.31 5.43 29.85 0.16 -1.14 16 3 C 0.51 11.03 7.85 87.66 0.69 11.72 16 4 O -0.60 -20.01 16.31 -3.04 -0.05 -20.06 16 5 N -0.62 -11.09 3.33 -811.05 -2.70 -13.80 16 6 C 0.10 0.60 6.69 86.85 0.58 1.18 16 7 C -0.11 -0.84 6.32 31.98 0.20 -0.63 16 8 C -0.11 -1.77 2.33 -10.35 -0.02 -1.79 16 9 H 0.13 1.42 6.96 -2.39 -0.02 1.40 16 10 C 0.52 12.63 6.46 87.66 0.57 13.20 16 11 O -0.58 -19.50 13.63 9.97 0.14 -19.36 16 12 N -0.60 -12.51 2.83 -846.77 -2.39 -14.91 16 13 C 0.07 0.77 9.90 127.77 1.26 2.04 16 14 C 0.09 2.29 5.18 86.38 0.45 2.74 16 15 C 0.08 2.82 3.48 30.60 0.11 2.93 16 16 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 17 O -0.57 -22.47 10.84 -135.97 -1.47 -23.94 16 18 C 0.12 4.90 5.34 86.38 0.46 5.36 16 19 N -0.61 -31.78 2.88 -726.96 -2.09 -33.87 16 20 C 0.19 10.02 8.82 127.77 1.13 11.15 16 21 C -0.26 -14.60 9.62 84.03 0.81 -13.79 16 22 H 0.07 3.79 7.85 -2.91 -0.02 3.77 16 23 C -0.06 -3.34 5.10 84.86 0.43 -2.90 16 24 N -0.94 -57.99 10.86 21.65 0.24 -57.76 16 25 Si 0.97 45.67 29.57 68.60 2.03 47.70 16 26 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 27 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 28 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 29 C 0.12 2.75 6.43 86.67 0.56 3.31 16 30 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.04 0.73 8.10 -2.38 -0.02 0.71 16 32 H 0.04 0.70 8.10 -2.39 -0.02 0.68 16 33 H 0.12 0.62 7.85 -2.39 -0.02 0.60 16 34 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.11 0.15 7.48 -2.39 -0.02 0.13 16 36 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 37 H 0.07 0.79 8.04 -2.39 -0.02 0.77 16 38 H 0.13 0.00 7.43 -2.39 -0.02 -0.02 16 39 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.10 0.43 5.85 -2.39 -0.01 0.42 16 41 H 0.09 0.80 7.84 -2.39 -0.02 0.78 16 42 H 0.07 1.96 7.49 -2.39 -0.02 1.94 16 43 H 0.11 2.08 7.86 -2.39 -0.02 2.07 16 44 H 0.37 14.05 8.31 -74.06 -0.62 13.44 16 45 H 0.04 1.73 8.07 -2.38 -0.02 1.71 16 46 H 0.06 2.41 8.04 -2.39 -0.02 2.40 16 47 H -0.01 -0.42 7.68 -2.39 -0.02 -0.44 16 48 H 0.02 1.11 7.08 -2.39 -0.02 1.09 16 49 H 0.01 0.87 7.05 -2.38 -0.02 0.85 16 50 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 51 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 52 H 0.05 1.59 6.74 -2.39 -0.02 1.58 16 Total: -1.00 -88.41 410.66 2.02 -86.39 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.29 Total: 17.42 kcal Atomic # 6 Polarization: 24.13 SS G_CDS: 8.04 Total: 32.18 kcal Atomic # 7 Polarization: -113.38 SS G_CDS: -6.95 Total: -120.33 kcal Atomic # 8 Polarization: -61.98 SS G_CDS: -1.39 Total: -63.36 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -88.41 2.02 -86.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486355808.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.587 kcal (2) G-P(sol) polarization free energy of solvation -88.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds