Wall clock time and date at job start Wed Apr 1 2020 00:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50692 * 109.47284 * 2 1 4 4 O 1.21289 * 119.99685 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00589 * 180.02562 * 3 2 1 6 6 C 1.47432 * 125.64098 * 359.97438 * 5 3 2 7 7 C 1.54912 * 104.82815 * 155.91147 * 6 5 3 8 8 C 1.55151 * 101.58326 * 37.00505 * 7 6 5 9 9 H 1.09002 * 110.72302 * 83.04244 * 8 7 6 10 10 C 1.50704 * 110.72063 * 206.13375 * 8 7 6 11 11 O 1.21288 * 119.99678 * 104.09392 * 10 8 7 12 12 N 1.34770 * 120.00297 * 284.09701 * 10 8 7 13 13 C 1.46504 * 119.99749 * 5.17898 * 12 10 8 14 14 C 1.46495 * 120.00384 * 185.18146 * 12 10 8 15 15 C 1.52998 * 109.47207 * 269.99882 * 14 12 10 16 16 H 1.08997 * 109.47314 * 304.99784 * 15 14 12 17 17 O 1.42906 * 109.46920 * 65.00212 * 15 14 12 18 18 C 1.53001 * 109.47027 * 184.99477 * 15 14 12 19 19 N 1.46500 * 109.46934 * 180.02562 * 18 15 14 20 20 C 1.46508 * 119.99977 * 270.00270 * 19 18 15 21 21 C 1.36934 * 120.00200 * 90.00842 * 19 18 15 22 22 H 1.08001 * 119.99514 * 334.12423 * 21 19 18 23 23 C 1.38808 * 120.00427 * 154.12843 * 21 19 18 24 24 N 1.31619 * 119.99781 * 348.36684 * 23 21 19 25 25 Si 1.86801 * 120.00044 * 168.35909 * 23 21 19 26 26 H 1.48496 * 109.47418 * 270.00302 * 25 23 21 27 27 H 1.48502 * 109.46874 * 30.00575 * 25 23 21 28 28 H 1.48507 * 109.46805 * 149.99939 * 25 23 21 29 29 C 1.47314 * 125.62094 * 180.20051 * 5 3 2 30 30 H 1.08995 * 109.47154 * 299.99707 * 1 2 3 31 31 H 1.09001 * 109.47550 * 60.00224 * 1 2 3 32 32 H 1.09008 * 109.47244 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.47050 * 239.99687 * 2 1 3 34 34 H 1.08999 * 109.47238 * 120.00485 * 2 1 3 35 35 H 1.08998 * 110.36629 * 37.07216 * 6 5 3 36 36 H 1.08998 * 110.36253 * 274.74113 * 6 5 3 37 37 H 1.09002 * 110.99921 * 278.93203 * 7 6 5 38 38 H 1.08998 * 111.03876 * 155.09481 * 7 6 5 39 39 H 1.08999 * 109.47523 * 264.60858 * 13 12 10 40 40 H 1.08997 * 109.47104 * 24.61440 * 13 12 10 41 41 H 1.09007 * 109.46758 * 144.60752 * 13 12 10 42 42 H 1.09001 * 109.47221 * 149.99388 * 14 12 10 43 43 H 1.08999 * 109.47062 * 30.00121 * 14 12 10 44 44 H 0.96697 * 113.99717 * 59.99788 * 17 15 14 45 45 H 1.09008 * 109.47031 * 60.00404 * 18 15 14 46 46 H 1.09001 * 109.47782 * 300.00395 * 18 15 14 47 47 H 1.09000 * 109.46720 * 271.42282 * 20 19 18 48 48 H 1.08992 * 109.46809 * 31.42060 * 20 19 18 49 49 H 1.08998 * 109.46799 * 151.42663 * 20 19 18 50 50 H 0.97006 * 120.00049 * 180.02562 * 24 23 21 51 51 H 1.09002 * 110.06347 * 61.67535 * 29 5 3 52 52 H 1.09003 * 109.85176 * 300.42007 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 1.2441 2.3426 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.4210 0.6462 -0.0006 7 6 5.6535 1.3578 -0.6124 8 6 5.5100 2.7876 -0.0273 9 1 5.9267 2.8362 0.9787 10 6 6.1720 3.8003 -0.9259 11 8 5.4960 4.5151 -1.6352 12 7 7.5150 3.9116 -0.9413 13 6 8.3366 2.9739 -0.1718 14 6 8.1534 4.9702 -1.7274 15 6 8.4357 4.4563 -3.1406 16 1 9.0256 3.5416 -3.0835 17 8 7.1996 4.1854 -3.8047 18 6 9.2131 5.5167 -3.9230 19 7 9.4829 5.0249 -5.2763 20 6 10.7104 4.2739 -5.5517 21 6 8.5879 5.2671 -6.2840 22 1 7.5449 5.4264 -6.0531 23 6 9.0210 5.3080 -7.6021 24 7 10.3090 5.3439 -7.8708 25 14 7.7759 5.3117 -8.9947 26 1 7.4782 3.9135 -9.3964 27 1 6.5264 5.9727 -8.5396 28 1 8.3333 6.0522 -10.1550 29 6 3.9820 3.0013 0.0036 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 4.1299 -0.2049 -0.6162 36 1 4.6365 0.3229 1.0178 37 1 5.5952 1.3733 -1.7008 38 1 6.5803 0.8906 -0.2795 39 1 8.5776 3.4121 0.7967 40 1 7.7856 2.0452 -0.0235 41 1 9.2579 2.7667 -0.7163 42 1 9.0904 5.2607 -1.2524 43 1 7.4901 5.8335 -1.7804 44 1 6.6225 4.9564 -3.8913 45 1 10.1560 5.7234 -3.4164 46 1 8.6232 6.4315 -3.9801 47 1 11.5085 4.9672 -5.8172 48 1 10.9986 3.7108 -4.6641 49 1 10.5372 3.5854 -6.3787 50 1 10.6117 5.3728 -8.7920 51 1 3.7016 3.5427 0.9071 52 1 3.6679 3.5598 -0.8782 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486355809.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:50 Heat of formation + Delta-G solvation = -88.711956 kcal Electronic energy + Delta-G solvation = -31123.410153 eV Core-core repulsion = 26931.175145 eV Total energy + Delta-G solvation = -4192.235009 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.80395 -39.65558 -37.70957 -36.90348 -35.41523 -34.45104 -33.21456 -32.07685 -31.28780 -29.69064 -29.36450 -27.06866 -26.29902 -25.76685 -24.92172 -23.18425 -22.55718 -21.47582 -20.41228 -19.44458 -19.11967 -17.80297 -17.47904 -16.83606 -16.20345 -16.14304 -15.70781 -15.64741 -15.13531 -14.85737 -14.76509 -14.42562 -13.93417 -13.90487 -13.63833 -13.43414 -13.30033 -13.21388 -13.00083 -12.77109 -12.74462 -12.56626 -12.28290 -12.03081 -11.95546 -11.83165 -11.60467 -11.53776 -11.49736 -11.21720 -11.02492 -10.81321 -10.60678 -10.52208 -10.34048 -10.06439 -9.91593 -9.86442 -9.75352 -9.56821 -8.91375 -8.58619 -8.32986 -6.59240 -5.65699 -3.11381 2.41374 2.58046 2.59721 2.99634 3.45739 3.51479 3.54092 3.98953 4.06431 4.33635 4.45339 4.57514 4.65196 4.73376 4.76622 4.84216 4.89182 4.92599 5.03838 5.06173 5.11892 5.22540 5.30331 5.31076 5.44792 5.46772 5.52028 5.53303 5.57024 5.63304 5.69139 5.71461 5.84489 5.89551 5.90908 5.98320 6.01281 6.08344 6.48060 6.55711 6.73207 6.82251 7.21055 7.34995 7.38738 7.70979 7.93084 7.93151 8.18375 8.45645 8.54305 9.32082 9.93744 10.43828 11.41049 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013236 B = 0.002555 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.986809 B =10955.912084 C =12287.628766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.525 3.475 4 O -0.538 6.538 5 N -0.622 5.622 6 C 0.101 3.899 7 C -0.123 4.123 8 C -0.121 4.121 9 H 0.105 0.895 10 C 0.526 3.474 11 O -0.522 6.522 12 N -0.608 5.608 13 C 0.071 3.929 14 C 0.082 3.918 15 C 0.073 3.927 16 H 0.083 0.917 17 O -0.539 6.539 18 C 0.124 3.876 19 N -0.591 5.591 20 C 0.164 3.836 21 C -0.237 4.237 22 H 0.068 0.932 23 C -0.003 4.003 24 N -0.913 5.913 25 Si 0.905 3.095 26 H -0.289 1.289 27 H -0.279 1.279 28 H -0.293 1.293 29 C 0.119 3.881 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.369 0.631 45 H 0.041 0.959 46 H 0.050 0.950 47 H 0.022 0.978 48 H -0.009 1.009 49 H 0.049 0.951 50 H 0.251 0.749 51 H 0.071 0.929 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.351 -12.502 23.172 27.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.179 4.179 3 C 0.314 3.686 4 O -0.414 6.414 5 N -0.357 5.357 6 C -0.022 4.022 7 C -0.162 4.162 8 C -0.143 4.143 9 H 0.124 0.876 10 C 0.313 3.687 11 O -0.397 6.397 12 N -0.341 5.341 13 C -0.072 4.072 14 C -0.041 4.041 15 C 0.009 3.991 16 H 0.101 0.899 17 O -0.343 6.343 18 C -0.005 4.005 19 N -0.313 5.313 20 C 0.019 3.981 21 C -0.367 4.367 22 H 0.086 0.914 23 C -0.201 4.201 24 N -0.559 5.559 25 Si 0.735 3.265 26 H -0.216 1.216 27 H -0.205 1.205 28 H -0.220 1.220 29 C -0.004 4.004 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.215 0.785 45 H 0.059 0.941 46 H 0.069 0.931 47 H 0.040 0.960 48 H 0.009 0.991 49 H 0.068 0.932 50 H 0.061 0.939 51 H 0.089 0.911 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.876 -12.213 22.572 26.845 hybrid contribution -0.340 0.407 -0.680 0.862 sum -8.216 -11.806 21.892 26.195 Atomic orbital electron populations 1.21545 0.92905 1.01620 1.03487 1.21618 0.98630 0.93426 1.04219 1.20499 0.80172 0.92017 0.75869 1.90728 1.54275 1.46784 1.49640 1.48606 1.05274 1.07887 1.73927 1.22371 0.86946 0.91833 1.01068 1.22892 0.98130 0.92690 1.02444 1.22306 0.96158 0.95633 1.00235 0.87647 1.20004 0.82007 0.84016 0.82676 1.90700 1.62821 1.44845 1.41342 1.47666 1.05558 1.32368 1.48463 1.21943 0.96389 0.93157 0.95704 1.22409 0.97992 0.90346 0.93352 1.23094 0.87178 1.00416 0.88425 0.89948 1.86541 1.29143 1.38601 1.80014 1.21336 0.97094 0.94526 0.87580 1.43691 1.22296 1.61725 1.03596 1.20746 0.88105 0.94056 0.95146 1.19182 0.89336 1.42468 0.85734 0.91406 1.25069 0.95807 1.01182 0.97999 1.70055 1.12361 1.55477 1.18003 0.86239 0.80695 0.77542 0.81985 1.21641 1.20451 1.21958 1.21862 0.89592 0.84864 1.04047 0.91991 0.91843 0.91997 0.88871 0.89033 0.89968 0.90840 0.89186 0.88719 0.92717 0.90669 0.90885 0.90160 0.89875 0.78470 0.94093 0.93145 0.95996 0.99050 0.93230 0.93937 0.91099 0.88777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.20 37.16 0.34 -0.71 16 2 C -0.14 -1.00 5.43 -27.89 -0.15 -1.15 16 3 C 0.53 6.03 7.85 -10.99 -0.09 5.94 16 4 O -0.54 -8.52 16.31 5.55 0.09 -8.43 16 5 N -0.62 -6.27 3.33 -170.28 -0.57 -6.84 16 6 C 0.10 0.63 6.69 -2.52 -0.02 0.61 16 7 C -0.12 -0.90 5.89 -24.58 -0.14 -1.04 16 8 C -0.12 -1.10 2.35 -89.94 -0.21 -1.31 16 9 H 0.11 0.68 7.80 -51.93 -0.41 0.27 16 10 C 0.53 6.75 6.66 -10.99 -0.07 6.68 16 11 O -0.52 -8.89 13.69 -7.55 -0.10 -8.99 16 12 N -0.61 -6.91 2.86 -181.57 -0.52 -7.43 16 13 C 0.07 0.52 10.10 59.85 0.60 1.12 16 14 C 0.08 1.07 5.12 -4.05 -0.02 1.05 16 15 C 0.07 1.24 3.48 -26.73 -0.09 1.14 16 16 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 17 O -0.54 -10.86 11.03 -48.33 -0.53 -11.39 16 18 C 0.12 2.44 5.39 -4.04 -0.02 2.42 16 19 N -0.59 -14.93 2.86 -181.11 -0.52 -15.45 16 20 C 0.16 4.08 8.99 59.85 0.54 4.62 16 21 C -0.24 -6.65 9.08 -15.06 -0.14 -6.79 16 22 H 0.07 1.89 7.44 -52.49 -0.39 1.50 16 23 C 0.00 -0.09 5.07 -17.43 -0.09 -0.18 16 24 N -0.91 -27.26 10.86 55.49 0.60 -26.66 16 25 Si 0.90 22.83 29.57 -169.99 -5.03 17.81 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 29 C 0.12 1.36 6.39 -2.91 -0.02 1.34 16 30 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 31 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 32 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 33 H 0.09 0.54 7.85 -51.92 -0.41 0.13 16 34 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.40 7.48 -51.93 -0.39 0.01 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.09 0.90 8.04 -51.93 -0.42 0.49 16 38 H 0.09 0.44 6.28 -51.93 -0.33 0.11 16 39 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.07 0.41 4.36 -51.93 -0.23 0.18 16 41 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 42 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 43 H 0.08 1.18 7.50 -51.93 -0.39 0.79 16 44 H 0.37 7.26 8.61 45.56 0.39 7.65 16 45 H 0.04 0.73 8.07 -51.92 -0.42 0.31 16 46 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 47 H 0.02 0.58 7.66 -51.93 -0.40 0.18 16 48 H -0.01 -0.19 8.08 -51.93 -0.42 -0.61 16 49 H 0.05 1.35 7.06 -51.93 -0.37 0.98 16 50 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 51 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 52 H 0.09 1.41 6.72 -51.93 -0.35 1.06 16 LS Contribution 410.05 15.07 6.18 6.18 Total: -1.00 -37.17 410.05 -8.25 -45.43 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -8.28 Total: 2.03 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: 0.42 Total: 13.73 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -1.00 Total: -56.37 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.55 Total: -28.81 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.03 Total: 17.81 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -37.17 -8.25 -45.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486355809.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.283 kcal (2) G-P(sol) polarization free energy of solvation -37.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds