Wall clock time and date at job start Wed Apr 1 2020 00:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47001 * 2 1 4 4 O 1.21283 * 120.00032 * 359.97438 * 3 2 1 5 5 N 1.34771 * 120.00191 * 180.02562 * 3 2 1 6 6 C 1.47023 * 125.64838 * 359.97199 * 5 3 2 7 7 C 1.54322 * 107.27511 * 178.99874 * 6 5 3 8 8 C 1.55161 * 102.94116 * 337.80906 * 7 6 5 9 9 H 1.09004 * 111.00307 * 277.38906 * 8 7 6 10 10 C 1.50698 * 111.00383 * 153.57547 * 8 7 6 11 11 O 1.21285 * 119.99882 * 269.81490 * 10 8 7 12 12 N 1.34779 * 119.99933 * 89.54147 * 10 8 7 13 13 C 1.46498 * 119.99983 * 5.41929 * 12 10 8 14 14 C 1.46499 * 119.99665 * 185.42130 * 12 10 8 15 15 C 1.53002 * 109.47323 * 90.00293 * 14 12 10 16 16 H 1.08998 * 109.47088 * 59.99710 * 15 14 12 17 17 O 1.42900 * 109.46795 * 299.99715 * 15 14 12 18 18 C 1.53001 * 109.47258 * 179.97438 * 15 14 12 19 19 N 1.46500 * 109.47129 * 184.99553 * 18 15 14 20 20 C 1.46497 * 119.99601 * 89.99936 * 19 18 15 21 21 C 1.36929 * 120.00034 * 270.00172 * 19 18 15 22 22 H 1.08000 * 120.00014 * 143.91104 * 21 19 18 23 23 C 1.38815 * 119.99850 * 323.90520 * 21 19 18 24 24 N 1.31622 * 119.99869 * 158.98890 * 23 21 19 25 25 Si 1.86798 * 120.00293 * 338.99030 * 23 21 19 26 26 H 1.48497 * 109.47038 * 95.35918 * 25 23 21 27 27 H 1.48501 * 109.47327 * 215.36197 * 25 23 21 28 28 H 1.48501 * 109.47130 * 335.35702 * 25 23 21 29 29 C 1.47466 * 125.63306 * 180.02562 * 5 3 2 30 30 H 1.09000 * 109.47113 * 59.99745 * 1 2 3 31 31 H 1.09002 * 109.46988 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46912 * 299.99817 * 1 2 3 33 33 H 1.09003 * 109.47277 * 240.00329 * 2 1 3 34 34 H 1.09000 * 109.47113 * 120.00255 * 2 1 3 35 35 H 1.09007 * 109.88158 * 59.58247 * 6 5 3 36 36 H 1.08999 * 109.88354 * 298.41849 * 6 5 3 37 37 H 1.09005 * 110.72058 * 219.44774 * 7 6 5 38 38 H 1.09002 * 110.72017 * 96.17105 * 7 6 5 39 39 H 1.09002 * 109.47169 * 84.76956 * 13 12 10 40 40 H 1.09003 * 109.47159 * 204.76797 * 13 12 10 41 41 H 1.08997 * 109.47429 * 324.77024 * 13 12 10 42 42 H 1.09006 * 109.46759 * 209.99831 * 14 12 10 43 43 H 1.09000 * 109.47193 * 329.99585 * 14 12 10 44 44 H 0.96702 * 113.99773 * 300.00200 * 17 15 14 45 45 H 1.09005 * 109.46762 * 304.99643 * 18 15 14 46 46 H 1.09002 * 109.46770 * 64.99277 * 18 15 14 47 47 H 1.09002 * 109.47269 * 85.25283 * 20 19 18 48 48 H 1.09009 * 109.47197 * 205.25138 * 20 19 18 49 49 H 1.09001 * 109.47538 * 325.25050 * 20 19 18 50 50 H 0.96993 * 120.00305 * 180.02562 * 24 23 21 51 51 H 1.09004 * 110.35324 * 85.22771 * 29 5 3 52 52 H 1.09004 * 110.40556 * 322.89048 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3573 1.6672 -0.0005 6 6 4.4181 0.6492 -0.0005 7 6 5.7689 1.3949 -0.0270 8 6 5.3891 2.7812 -0.6114 9 1 5.3413 2.7465 -1.6999 10 6 6.3522 3.8443 -0.1497 11 8 6.1310 4.4609 0.8711 12 7 7.4621 4.1061 -0.8680 13 6 7.6736 3.4432 -2.1572 14 6 8.4571 5.0536 -0.3596 15 6 9.4900 4.3044 0.4847 16 1 9.9851 3.5524 -0.1297 17 8 8.8351 3.6664 1.5829 18 6 10.5295 5.2938 1.0152 19 7 11.5832 4.5625 1.7231 20 6 12.7634 4.0906 0.9946 21 6 11.4649 4.3199 3.0655 22 1 11.8267 3.3907 3.4803 23 6 10.8799 5.2684 3.8933 24 7 10.3893 4.9099 5.0609 25 14 10.7890 7.0533 3.3502 26 1 9.4680 7.3134 2.7237 27 1 10.9604 7.9390 4.5297 28 1 11.8664 7.3266 2.3654 29 6 3.9829 3.0026 -0.0001 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 4.3260 0.0177 -0.8843 36 1 4.3482 0.0408 0.9012 37 1 6.4790 0.8837 -0.6771 38 1 6.1721 1.4985 0.9804 39 1 7.1577 3.9988 -2.9404 40 1 8.7405 3.4098 -2.3780 41 1 7.2798 2.4278 -2.1126 42 1 8.9567 5.5402 -1.1973 43 1 7.9620 5.8056 0.2548 44 1 8.3724 4.2767 2.1733 45 1 10.9661 5.8439 0.1815 46 1 10.0494 5.9929 1.7000 47 1 13.5026 4.8900 0.9437 48 1 13.1913 3.2325 1.5130 49 1 12.4744 3.7982 -0.0149 50 1 9.9803 5.5725 5.6391 51 1 4.0673 3.3813 1.0186 52 1 3.4060 3.6927 -0.6157 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486355810.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:53 Heat of formation + Delta-G solvation = -112.132835 kcal Electronic energy + Delta-G solvation = -31525.513554 eV Core-core repulsion = 27332.262940 eV Total energy + Delta-G solvation = -4193.250614 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.66274 -40.64625 -39.06764 -38.10759 -36.79224 -35.96810 -33.93615 -33.69242 -32.81668 -31.34052 -30.21300 -28.41284 -27.85395 -27.28166 -25.93776 -23.97686 -23.53544 -22.72284 -22.33156 -20.26636 -19.98466 -19.01958 -18.55158 -18.28677 -17.59973 -17.38794 -16.99457 -16.57695 -16.47119 -16.12560 -16.06055 -15.60964 -15.46795 -15.12351 -14.69684 -14.57879 -14.52743 -14.30705 -14.12856 -13.98234 -13.79320 -13.70622 -13.57323 -13.27167 -13.14122 -13.05565 -12.86000 -12.68179 -12.62104 -12.53717 -12.33059 -12.27497 -12.07752 -12.03859 -11.94929 -11.85447 -11.47100 -11.11907 -10.98563 -10.79439 -10.62059 -9.74842 -9.56403 -8.70231 -8.14074 -5.49367 1.25972 1.37390 1.47521 1.55432 1.58137 1.76492 2.16347 2.41293 3.06295 3.29093 3.36349 3.42400 3.63714 3.74536 3.76447 3.94886 4.05963 4.16519 4.19409 4.20235 4.21606 4.27543 4.32536 4.37897 4.50630 4.52221 4.63563 4.67946 4.71566 4.74534 4.75170 4.78688 4.84204 4.87989 4.96785 5.01918 5.03851 5.05417 5.08467 5.13252 5.19884 5.22845 5.35530 5.52921 5.96331 6.18865 6.39541 6.46401 6.83390 7.02785 7.08188 7.20887 7.67062 8.05832 9.06132 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017297 B = 0.002650 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.395165 B =10562.280505 C =11046.938559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 C 0.515 3.485 4 O -0.595 6.595 5 N -0.620 5.620 6 C 0.102 3.898 7 C -0.111 4.111 8 C -0.109 4.109 9 H 0.139 0.861 10 C 0.521 3.479 11 O -0.583 6.583 12 N -0.605 5.605 13 C 0.068 3.932 14 C 0.084 3.916 15 C 0.083 3.917 16 H 0.102 0.898 17 O -0.554 6.554 18 C 0.101 3.899 19 N -0.619 5.619 20 C 0.124 3.876 21 C -0.233 4.233 22 H 0.034 0.966 23 C -0.024 4.024 24 N -0.951 5.951 25 Si 0.943 3.057 26 H -0.280 1.280 27 H -0.316 1.316 28 H -0.256 1.256 29 C 0.120 3.880 30 H 0.048 0.952 31 H 0.089 0.911 32 H 0.040 0.960 33 H 0.126 0.874 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.085 0.915 37 H 0.123 0.877 38 H 0.056 0.944 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.120 0.880 43 H 0.055 0.945 44 H 0.361 0.639 45 H 0.084 0.916 46 H 0.029 0.971 47 H 0.017 0.983 48 H 0.036 0.964 49 H 0.064 0.936 50 H 0.258 0.742 51 H 0.049 0.951 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.117 -11.705 -23.002 28.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.169 4.169 3 C 0.307 3.693 4 O -0.476 6.476 5 N -0.354 5.354 6 C -0.019 4.019 7 C -0.149 4.149 8 C -0.131 4.131 9 H 0.157 0.843 10 C 0.309 3.691 11 O -0.463 6.463 12 N -0.336 5.336 13 C -0.073 4.073 14 C -0.040 4.040 15 C 0.021 3.979 16 H 0.120 0.880 17 O -0.357 6.357 18 C -0.025 4.025 19 N -0.344 5.344 20 C -0.020 4.020 21 C -0.363 4.363 22 H 0.052 0.948 23 C -0.219 4.219 24 N -0.597 5.597 25 Si 0.773 3.227 26 H -0.207 1.207 27 H -0.246 1.246 28 H -0.180 1.180 29 C -0.004 4.004 30 H 0.067 0.933 31 H 0.108 0.892 32 H 0.059 0.941 33 H 0.144 0.856 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.103 0.897 37 H 0.141 0.859 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.138 0.862 43 H 0.074 0.926 44 H 0.207 0.793 45 H 0.102 0.898 46 H 0.047 0.953 47 H 0.035 0.965 48 H 0.055 0.945 49 H 0.082 0.918 50 H 0.067 0.933 51 H 0.067 0.933 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.470 -11.443 -22.671 27.865 hybrid contribution -0.188 1.953 1.205 2.303 sum -11.658 -9.490 -21.466 26.206 Atomic orbital electron populations 1.21558 0.93477 1.02808 1.01736 1.21698 0.98007 0.90478 1.06751 1.21417 0.79913 0.93401 0.74583 1.90690 1.55656 1.48770 1.52493 1.48687 1.05829 1.07999 1.72892 1.22342 0.84331 0.90573 1.04701 1.22615 0.97792 0.92247 1.02267 1.22414 0.92278 0.94855 1.03523 0.84279 1.20664 0.82143 0.83298 0.82977 1.90706 1.76218 1.52454 1.26911 1.47752 1.19716 1.44221 1.21951 1.22176 1.04320 0.98447 0.82393 1.22228 0.90133 0.91860 0.99813 1.22951 0.91578 0.96048 0.87331 0.88038 1.86463 1.71405 1.37803 1.40068 1.21969 0.90655 0.93996 0.95894 1.44045 1.18337 1.66977 1.05002 1.21190 0.87910 0.97200 0.95725 1.18521 1.36108 0.98393 0.83309 0.94824 1.25925 0.99366 1.01203 0.95433 1.70000 1.41664 1.34599 1.13415 0.85888 0.78212 0.82246 0.76310 1.20733 1.24563 1.18029 1.21884 0.91987 0.85915 1.00577 0.93315 0.89191 0.94111 0.85618 0.86881 0.86720 0.89714 0.85861 0.92543 0.90526 0.89247 0.89228 0.86182 0.92625 0.79331 0.89818 0.95302 0.96472 0.94491 0.91753 0.93315 0.93267 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.20 71.98 0.66 -1.27 16 2 C -0.13 -1.58 5.61 29.85 0.17 -1.41 16 3 C 0.52 11.67 7.85 87.66 0.69 12.36 16 4 O -0.60 -19.53 16.24 -3.04 -0.05 -19.58 16 5 N -0.62 -12.64 3.33 -811.63 -2.70 -15.34 16 6 C 0.10 1.23 6.49 86.73 0.56 1.79 16 7 C -0.11 -1.75 6.28 31.78 0.20 -1.55 16 8 C -0.11 -2.10 2.42 -10.14 -0.02 -2.13 16 9 H 0.14 1.66 6.84 -2.38 -0.02 1.64 16 10 C 0.52 14.61 6.31 87.66 0.55 15.16 16 11 O -0.58 -23.00 14.50 -1.43 -0.02 -23.02 16 12 N -0.60 -13.76 2.83 -846.75 -2.39 -16.15 16 13 C 0.07 0.76 9.85 127.77 1.26 2.02 16 14 C 0.08 2.26 5.15 86.38 0.44 2.70 16 15 C 0.08 2.83 3.48 30.60 0.11 2.93 16 16 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 17 O -0.55 -24.44 11.74 -147.36 -1.73 -26.17 16 18 C 0.10 3.92 4.19 86.38 0.36 4.28 16 19 N -0.62 -28.22 2.50 -726.93 -1.81 -30.04 16 20 C 0.12 4.48 10.70 127.77 1.37 5.85 16 21 C -0.23 -13.30 9.43 84.04 0.79 -12.51 16 22 H 0.03 2.18 8.06 -2.91 -0.02 2.16 16 23 C -0.02 -1.42 5.34 84.86 0.45 -0.97 16 24 N -0.95 -61.30 13.97 21.65 0.30 -61.00 16 25 Si 0.94 47.31 24.88 68.60 1.71 49.02 16 26 H -0.28 -13.53 6.69 99.48 0.67 -12.86 16 27 H -0.32 -16.40 7.11 99.48 0.71 -15.69 16 28 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 29 C 0.12 3.06 6.23 86.85 0.54 3.61 16 30 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 31 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.04 0.73 8.10 -2.39 -0.02 0.72 16 33 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.11 0.51 8.14 -2.38 -0.02 0.50 16 36 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.12 1.14 7.69 -2.38 -0.02 1.12 16 38 H 0.06 1.34 8.03 -2.39 -0.02 1.32 16 39 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.09 0.80 8.03 -2.39 -0.02 0.78 16 41 H 0.09 0.65 6.13 -2.39 -0.01 0.64 16 42 H 0.12 2.25 8.07 -2.38 -0.02 2.23 16 43 H 0.06 1.86 7.36 -2.39 -0.02 1.84 16 44 H 0.36 17.79 8.62 -74.06 -0.64 17.15 16 45 H 0.08 2.61 8.07 -2.38 -0.02 2.59 16 46 H 0.03 1.31 2.96 -2.39 -0.01 1.30 16 47 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.04 1.38 8.00 -2.38 -0.02 1.36 16 49 H 0.06 1.81 8.11 -2.39 -0.02 1.80 16 50 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 51 H 0.05 1.64 7.21 -2.38 -0.02 1.62 16 52 H 0.07 1.85 8.04 -2.38 -0.02 1.83 16 Total: -1.00 -88.86 410.26 1.66 -87.20 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 0.23 Total: 24.21 kcal Atomic # 6 Polarization: 22.73 SS G_CDS: 8.13 Total: 30.87 kcal Atomic # 7 Polarization: -115.92 SS G_CDS: -6.61 Total: -122.53 kcal Atomic # 8 Polarization: -66.97 SS G_CDS: -1.80 Total: -68.77 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.71 Total: 49.02 kcal Total: -88.86 1.66 -87.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486355810.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.931 kcal (2) G-P(sol) polarization free energy of solvation -88.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds