Wall clock time and date at job start Wed Apr 1 2020 00:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.46833 * 2 1 4 4 O 1.21280 * 120.00405 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00185 * 180.02562 * 3 2 1 6 6 C 1.47027 * 125.64927 * 359.97391 * 5 3 2 7 7 C 1.54317 * 107.27335 * 178.97406 * 6 5 3 8 8 C 1.55149 * 102.94427 * 337.80828 * 7 6 5 9 9 H 1.09002 * 111.00838 * 277.38674 * 8 7 6 10 10 C 1.50701 * 111.00687 * 153.57636 * 8 7 6 11 11 O 1.21284 * 119.99862 * 244.58404 * 10 8 7 12 12 N 1.34773 * 120.00160 * 64.58371 * 10 8 7 13 13 C 1.46499 * 119.99899 * 359.97438 * 12 10 8 14 14 C 1.46500 * 120.00246 * 180.02562 * 12 10 8 15 15 C 1.53006 * 109.47073 * 89.99558 * 14 12 10 16 16 H 1.09000 * 109.47351 * 305.00204 * 15 14 12 17 17 O 1.42903 * 109.47175 * 65.00242 * 15 14 12 18 18 C 1.53004 * 109.47038 * 185.00046 * 15 14 12 19 19 N 1.46496 * 109.47142 * 180.02562 * 18 15 14 20 20 C 1.46502 * 120.00019 * 89.99659 * 19 18 15 21 21 C 1.36938 * 119.99910 * 270.00473 * 19 18 15 22 22 H 1.07999 * 120.00472 * 23.18471 * 21 19 18 23 23 C 1.38819 * 119.99724 * 203.18626 * 21 19 18 24 24 N 1.31621 * 119.99722 * 13.71091 * 23 21 19 25 25 Si 1.86796 * 119.99991 * 193.70408 * 23 21 19 26 26 H 1.48500 * 109.47196 * 60.00398 * 25 23 21 27 27 H 1.48496 * 109.47091 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47295 * 300.00177 * 25 23 21 29 29 C 1.47468 * 125.63360 * 179.97438 * 5 3 2 30 30 H 1.09008 * 109.47028 * 299.99710 * 1 2 3 31 31 H 1.08989 * 109.47523 * 60.00338 * 1 2 3 32 32 H 1.09006 * 109.46662 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47452 * 240.00457 * 2 1 3 34 34 H 1.08998 * 109.47689 * 119.99455 * 2 1 3 35 35 H 1.09007 * 109.88188 * 59.55661 * 6 5 3 36 36 H 1.08993 * 109.88084 * 298.39516 * 6 5 3 37 37 H 1.09004 * 110.72143 * 219.44079 * 7 6 5 38 38 H 1.09001 * 110.87224 * 96.24437 * 7 6 5 39 39 H 1.08992 * 109.47645 * 270.00865 * 13 12 10 40 40 H 1.09004 * 109.46945 * 30.01075 * 13 12 10 41 41 H 1.09003 * 109.47273 * 150.00332 * 13 12 10 42 42 H 1.09001 * 109.47407 * 209.99202 * 14 12 10 43 43 H 1.08995 * 109.46944 * 329.99815 * 14 12 10 44 44 H 0.96699 * 113.99918 * 59.99631 * 17 15 14 45 45 H 1.09000 * 109.47179 * 300.00263 * 18 15 14 46 46 H 1.08997 * 109.46781 * 59.99952 * 18 15 14 47 47 H 1.09005 * 109.46559 * 95.15871 * 20 19 18 48 48 H 1.09005 * 109.47254 * 215.15866 * 20 19 18 49 49 H 1.08999 * 109.47576 * 335.16330 * 20 19 18 50 50 H 0.97004 * 119.99530 * 180.02562 * 24 23 21 51 51 H 1.09001 * 110.34851 * 85.24798 * 29 5 3 52 52 H 1.09000 * 110.40382 * 322.91570 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3573 1.6672 -0.0005 6 6 4.4181 0.6493 -0.0006 7 6 5.7688 1.3951 -0.0276 8 6 5.3889 2.7811 -0.6123 9 1 5.3407 2.7462 -1.7007 10 6 6.3520 3.8444 -0.1512 11 8 5.9627 4.7501 0.5553 12 7 7.6461 3.7890 -0.5237 13 6 8.1165 2.6946 -1.3765 14 6 8.5825 4.8224 -0.0750 15 6 9.2122 4.3979 1.2533 16 1 8.4253 4.1812 1.9757 17 8 10.0083 3.2285 1.0510 18 6 10.0943 5.5297 1.7843 19 7 10.6978 5.1231 3.0558 20 6 11.9931 4.4387 3.0662 21 6 10.0510 5.3826 4.2346 22 1 8.9811 5.5295 4.2426 23 6 10.7706 5.4569 5.4193 24 7 12.0832 5.5490 5.3873 25 14 9.8762 5.4264 7.0589 26 1 9.1119 4.1591 7.1823 27 1 10.8642 5.5186 8.1636 28 1 8.9412 6.5776 7.1343 29 6 3.9828 3.0027 -0.0011 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 4.3257 0.0176 -0.8841 36 1 4.3484 0.0412 0.9013 37 1 6.4788 0.8837 -0.6777 38 1 6.1752 1.4992 0.9784 39 1 8.4496 1.8652 -0.7528 40 1 7.3032 2.3608 -2.0209 41 1 8.9467 3.0437 -1.9907 42 1 9.3649 4.9531 -0.8225 43 1 8.0483 5.7627 0.0603 44 1 10.7299 3.3486 0.4185 45 1 10.8813 5.7465 1.0619 46 1 9.4871 6.4216 1.9386 47 1 12.7879 5.1679 3.2236 48 1 12.0093 3.7039 3.8712 49 1 12.1457 3.9353 2.1115 50 1 12.5861 5.6005 6.2152 51 1 4.0673 3.3821 1.0172 52 1 3.4058 3.6923 -0.6171 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486355811.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:58 Heat of formation + Delta-G solvation = -91.621459 kcal Electronic energy + Delta-G solvation = -30996.112076 eV Core-core repulsion = 26803.750902 eV Total energy + Delta-G solvation = -4192.361174 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.82378 -39.71268 -37.80384 -37.10076 -35.42335 -34.53233 -33.25032 -32.13183 -31.31524 -29.81390 -29.42057 -26.97661 -26.36195 -25.71354 -24.95764 -23.11833 -22.53199 -21.62065 -20.59520 -19.49090 -19.12898 -17.69857 -17.53531 -16.84658 -16.33294 -16.11473 -15.86647 -15.59022 -15.14888 -14.93401 -14.71919 -14.56827 -14.18072 -13.88537 -13.61421 -13.46247 -13.30223 -13.15861 -12.94592 -12.87702 -12.74643 -12.57841 -12.37115 -12.22836 -11.98011 -11.86429 -11.55083 -11.52577 -11.45524 -11.24498 -11.10155 -10.82658 -10.67517 -10.53165 -10.35426 -10.10579 -10.08207 -9.88481 -9.81752 -9.70420 -8.94756 -8.65244 -8.37102 -6.63895 -5.66779 -3.13147 2.37273 2.49241 2.59831 2.98683 3.43984 3.48036 3.50853 3.95087 4.04787 4.38359 4.42539 4.54302 4.61295 4.70975 4.73497 4.84397 4.86872 4.91974 4.96217 5.08558 5.14401 5.23117 5.24904 5.33438 5.37354 5.44270 5.47986 5.53845 5.59661 5.62520 5.66550 5.77041 5.81308 5.87285 5.90451 5.93577 5.97734 6.02828 6.45948 6.62993 6.76157 6.84501 7.18635 7.29779 7.45335 7.76568 7.86617 7.89222 8.10411 8.15948 8.45517 9.29459 9.92357 10.40859 11.37269 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012943 B = 0.002525 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.738301 B =11087.218533 C =12369.971791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.526 3.474 4 O -0.539 6.539 5 N -0.623 5.623 6 C 0.102 3.898 7 C -0.123 4.123 8 C -0.122 4.122 9 H 0.109 0.891 10 C 0.522 3.478 11 O -0.531 6.531 12 N -0.603 5.603 13 C 0.080 3.920 14 C 0.083 3.917 15 C 0.071 3.929 16 H 0.096 0.904 17 O -0.549 6.549 18 C 0.126 3.874 19 N -0.591 5.591 20 C 0.170 3.830 21 C -0.254 4.254 22 H 0.065 0.935 23 C 0.002 3.998 24 N -0.908 5.908 25 Si 0.904 3.096 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.283 1.283 29 C 0.125 3.875 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.357 0.643 45 H 0.037 0.963 46 H 0.056 0.944 47 H 0.026 0.974 48 H 0.037 0.963 49 H 0.000 1.000 50 H 0.252 0.748 51 H 0.085 0.915 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.430 -13.936 -19.318 26.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.179 4.179 3 C 0.315 3.685 4 O -0.415 6.415 5 N -0.358 5.358 6 C -0.021 4.021 7 C -0.161 4.161 8 C -0.144 4.144 9 H 0.127 0.873 10 C 0.309 3.691 11 O -0.407 6.407 12 N -0.336 5.336 13 C -0.063 4.063 14 C -0.040 4.040 15 C 0.008 3.992 16 H 0.114 0.886 17 O -0.352 6.352 18 C -0.003 4.003 19 N -0.313 5.313 20 C 0.026 3.974 21 C -0.383 4.383 22 H 0.083 0.917 23 C -0.196 4.196 24 N -0.553 5.553 25 Si 0.734 3.266 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.209 1.209 29 C 0.002 3.998 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.109 0.891 44 H 0.202 0.798 45 H 0.056 0.944 46 H 0.074 0.926 47 H 0.044 0.956 48 H 0.056 0.944 49 H 0.018 0.982 50 H 0.062 0.938 51 H 0.103 0.897 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.420 -13.202 -18.334 26.278 hybrid contribution 0.221 0.113 0.491 0.550 sum -13.199 -13.089 -17.843 25.766 Atomic orbital electron populations 1.21545 0.92923 1.01624 1.03460 1.21617 0.98591 0.93404 1.04279 1.20499 0.80169 0.92031 0.75799 1.90725 1.54250 1.46795 1.49767 1.48580 1.05280 1.08088 1.73883 1.22076 0.86495 0.91350 1.02220 1.22743 0.96520 0.93376 1.03423 1.22422 0.94898 0.95061 1.02037 0.87330 1.20095 0.82413 0.86171 0.80446 1.90762 1.77290 1.35714 1.36897 1.47697 1.08249 1.27017 1.50628 1.21886 1.00012 0.90371 0.94021 1.22401 0.92315 0.91680 0.97591 1.23269 0.93915 0.88171 0.93856 0.88566 1.86630 1.45944 1.36163 1.66499 1.21280 0.95155 0.94567 0.89300 1.43685 1.21169 1.66062 1.00389 1.20726 0.86719 0.94781 0.95210 1.19128 0.90973 1.43443 0.84778 0.91694 1.24991 0.95530 1.00829 0.98264 1.70068 1.04913 1.54309 1.26019 0.86348 0.78606 0.78130 0.83565 1.21121 1.21654 1.20891 1.22018 0.90475 0.84581 1.02677 0.91894 0.91976 0.91993 0.88987 0.88885 0.90887 0.90738 0.88791 0.89369 0.91572 0.91624 0.91227 0.90592 0.89140 0.79786 0.94432 0.92615 0.95586 0.94439 0.98165 0.93798 0.89686 0.89840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.20 37.16 0.34 -0.66 16 2 C -0.14 -0.95 5.61 -27.88 -0.16 -1.11 16 3 C 0.53 5.83 7.85 -10.99 -0.09 5.74 16 4 O -0.54 -8.27 16.24 5.56 0.09 -8.18 16 5 N -0.62 -6.19 3.33 -170.49 -0.57 -6.76 16 6 C 0.10 0.66 6.49 -3.06 -0.02 0.64 16 7 C -0.12 -0.89 5.56 -24.90 -0.14 -1.03 16 8 C -0.12 -1.14 2.43 -89.63 -0.22 -1.35 16 9 H 0.11 0.77 7.41 -51.93 -0.38 0.39 16 10 C 0.52 6.80 7.06 -10.99 -0.08 6.72 16 11 O -0.53 -9.34 15.34 5.55 0.09 -9.26 16 12 N -0.60 -6.84 2.84 -181.57 -0.52 -7.36 16 13 C 0.08 0.58 8.63 59.85 0.52 1.10 16 14 C 0.08 1.08 5.11 -4.04 -0.02 1.06 16 15 C 0.07 1.20 3.48 -26.73 -0.09 1.10 16 16 H 0.10 2.02 8.14 -51.93 -0.42 1.60 16 17 O -0.55 -8.81 11.70 -35.23 -0.41 -9.22 16 18 C 0.13 2.50 5.34 -4.04 -0.02 2.48 16 19 N -0.59 -14.97 2.84 -181.11 -0.51 -15.48 16 20 C 0.17 4.21 8.66 59.85 0.52 4.73 16 21 C -0.25 -7.20 9.65 -15.06 -0.15 -7.34 16 22 H 0.07 1.84 7.87 -52.49 -0.41 1.43 16 23 C 0.00 0.06 5.09 -17.43 -0.09 -0.03 16 24 N -0.91 -27.08 10.76 55.49 0.60 -26.48 16 25 Si 0.90 22.71 29.58 -169.99 -5.03 17.68 16 26 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 29 C 0.13 1.46 6.00 -2.51 -0.02 1.44 16 30 H 0.06 0.54 8.10 -51.92 -0.42 0.12 16 31 H 0.06 0.51 8.10 -51.94 -0.42 0.08 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.09 0.45 6.63 -51.93 -0.34 0.11 16 38 H 0.09 0.84 8.03 -51.93 -0.42 0.42 16 39 H 0.07 0.51 7.76 -51.93 -0.40 0.10 16 40 H 0.07 0.33 6.03 -51.93 -0.31 0.02 16 41 H 0.07 0.42 7.89 -51.93 -0.41 0.01 16 42 H 0.08 0.77 7.89 -51.93 -0.41 0.36 16 43 H 0.09 1.31 7.42 -51.93 -0.39 0.92 16 44 H 0.36 4.43 8.79 45.56 0.40 4.83 16 45 H 0.04 0.66 8.07 -51.93 -0.42 0.24 16 46 H 0.06 1.14 8.04 -51.93 -0.42 0.73 16 47 H 0.03 0.70 7.33 -51.93 -0.38 0.31 16 48 H 0.04 1.01 7.37 -51.93 -0.38 0.63 16 49 H 0.00 0.00 7.00 -51.93 -0.36 -0.37 16 50 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 51 H 0.08 1.21 7.45 -51.93 -0.39 0.82 16 52 H 0.08 1.05 8.04 -51.93 -0.42 0.63 16 LS Contribution 412.49 15.07 6.22 6.22 Total: -1.00 -37.26 412.49 -8.11 -45.38 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -8.36 Total: -0.02 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: 0.30 Total: 13.48 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: -1.00 Total: -56.08 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.24 Total: -26.65 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.03 Total: 17.68 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -37.26 -8.11 -45.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486355811.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.246 kcal (2) G-P(sol) polarization free energy of solvation -37.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds