Wall clock time and date at job start Wed Apr 1 2020 00:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.46833 * 2 1 4 4 O 1.21280 * 120.00405 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00185 * 180.02562 * 3 2 1 6 6 C 1.47027 * 125.64927 * 359.97391 * 5 3 2 7 7 C 1.54317 * 107.27335 * 178.97406 * 6 5 3 8 8 C 1.55149 * 102.94427 * 337.80828 * 7 6 5 9 9 H 1.09002 * 111.00838 * 277.38674 * 8 7 6 10 10 C 1.50701 * 111.00687 * 153.57636 * 8 7 6 11 11 O 1.21284 * 119.99862 * 244.58404 * 10 8 7 12 12 N 1.34773 * 120.00160 * 64.58371 * 10 8 7 13 13 C 1.46499 * 119.99899 * 359.97438 * 12 10 8 14 14 C 1.46500 * 120.00246 * 180.02562 * 12 10 8 15 15 C 1.53006 * 109.47073 * 89.99558 * 14 12 10 16 16 H 1.09000 * 109.47351 * 305.00204 * 15 14 12 17 17 O 1.42903 * 109.47175 * 65.00242 * 15 14 12 18 18 C 1.53004 * 109.47038 * 185.00046 * 15 14 12 19 19 N 1.46496 * 109.47142 * 180.02562 * 18 15 14 20 20 C 1.46502 * 120.00019 * 89.99659 * 19 18 15 21 21 C 1.36938 * 119.99910 * 270.00473 * 19 18 15 22 22 H 1.07999 * 120.00472 * 23.18471 * 21 19 18 23 23 C 1.38819 * 119.99724 * 203.18626 * 21 19 18 24 24 N 1.31621 * 119.99722 * 13.71091 * 23 21 19 25 25 Si 1.86796 * 119.99991 * 193.70408 * 23 21 19 26 26 H 1.48500 * 109.47196 * 60.00398 * 25 23 21 27 27 H 1.48496 * 109.47091 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47295 * 300.00177 * 25 23 21 29 29 C 1.47468 * 125.63360 * 179.97438 * 5 3 2 30 30 H 1.09008 * 109.47028 * 299.99710 * 1 2 3 31 31 H 1.08989 * 109.47523 * 60.00338 * 1 2 3 32 32 H 1.09006 * 109.46662 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47452 * 240.00457 * 2 1 3 34 34 H 1.08998 * 109.47689 * 119.99455 * 2 1 3 35 35 H 1.09007 * 109.88188 * 59.55661 * 6 5 3 36 36 H 1.08993 * 109.88084 * 298.39516 * 6 5 3 37 37 H 1.09004 * 110.72143 * 219.44079 * 7 6 5 38 38 H 1.09001 * 110.87224 * 96.24437 * 7 6 5 39 39 H 1.08992 * 109.47645 * 270.00865 * 13 12 10 40 40 H 1.09004 * 109.46945 * 30.01075 * 13 12 10 41 41 H 1.09003 * 109.47273 * 150.00332 * 13 12 10 42 42 H 1.09001 * 109.47407 * 209.99202 * 14 12 10 43 43 H 1.08995 * 109.46944 * 329.99815 * 14 12 10 44 44 H 0.96699 * 113.99918 * 59.99631 * 17 15 14 45 45 H 1.09000 * 109.47179 * 300.00263 * 18 15 14 46 46 H 1.08997 * 109.46781 * 59.99952 * 18 15 14 47 47 H 1.09005 * 109.46559 * 95.15871 * 20 19 18 48 48 H 1.09005 * 109.47254 * 215.15866 * 20 19 18 49 49 H 1.08999 * 109.47576 * 335.16330 * 20 19 18 50 50 H 0.97004 * 119.99530 * 180.02562 * 24 23 21 51 51 H 1.09001 * 110.34851 * 85.24798 * 29 5 3 52 52 H 1.09000 * 110.40382 * 322.91570 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3573 1.6672 -0.0005 6 6 4.4181 0.6493 -0.0006 7 6 5.7688 1.3951 -0.0276 8 6 5.3889 2.7811 -0.6123 9 1 5.3407 2.7462 -1.7007 10 6 6.3520 3.8444 -0.1512 11 8 5.9627 4.7501 0.5553 12 7 7.6461 3.7890 -0.5237 13 6 8.1165 2.6946 -1.3765 14 6 8.5825 4.8224 -0.0750 15 6 9.2122 4.3979 1.2533 16 1 8.4253 4.1812 1.9757 17 8 10.0083 3.2285 1.0510 18 6 10.0943 5.5297 1.7843 19 7 10.6978 5.1231 3.0558 20 6 11.9931 4.4387 3.0662 21 6 10.0510 5.3826 4.2346 22 1 8.9811 5.5295 4.2426 23 6 10.7706 5.4569 5.4193 24 7 12.0832 5.5490 5.3873 25 14 9.8762 5.4264 7.0589 26 1 9.1119 4.1591 7.1823 27 1 10.8642 5.5186 8.1636 28 1 8.9412 6.5776 7.1343 29 6 3.9828 3.0027 -0.0011 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 4.3257 0.0176 -0.8841 36 1 4.3484 0.0412 0.9013 37 1 6.4788 0.8837 -0.6777 38 1 6.1752 1.4992 0.9784 39 1 8.4496 1.8652 -0.7528 40 1 7.3032 2.3608 -2.0209 41 1 8.9467 3.0437 -1.9907 42 1 9.3649 4.9531 -0.8225 43 1 8.0483 5.7627 0.0603 44 1 10.7299 3.3486 0.4185 45 1 10.8813 5.7465 1.0619 46 1 9.4871 6.4216 1.9386 47 1 12.7879 5.1679 3.2236 48 1 12.0093 3.7039 3.8712 49 1 12.1457 3.9353 2.1115 50 1 12.5861 5.6005 6.2152 51 1 4.0673 3.3821 1.0172 52 1 3.4058 3.6923 -0.6171 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486355811.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:57 Heat of formation + Delta-G solvation = -120.237109 kcal Electronic energy + Delta-G solvation = -30997.352943 eV Core-core repulsion = 26803.750902 eV Total energy + Delta-G solvation = -4193.602042 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.70340 -40.65285 -39.05049 -38.13856 -36.86168 -35.98849 -33.95516 -33.33789 -32.83650 -31.12168 -30.20052 -28.11591 -27.76117 -27.31138 -25.95023 -24.11333 -23.51318 -22.70348 -22.27838 -20.27349 -20.02872 -18.85148 -18.48188 -18.29370 -17.63400 -17.02768 -16.92008 -16.73741 -16.46267 -16.19208 -16.13041 -15.60708 -15.33834 -15.08108 -14.76521 -14.62107 -14.40088 -14.33082 -14.05479 -13.81645 -13.65080 -13.58453 -13.14863 -13.13353 -13.01422 -12.86531 -12.82446 -12.63033 -12.60102 -12.44367 -12.30014 -12.21996 -12.08800 -12.04876 -11.99591 -11.87313 -11.82280 -11.30135 -10.98691 -10.85677 -10.62773 -9.75892 -9.58993 -8.67912 -7.84446 -5.32925 1.40336 1.42140 1.49307 1.52650 1.56236 1.77203 2.15421 2.47413 3.19918 3.25442 3.35993 3.56394 3.66127 3.73478 3.77573 3.96901 4.13274 4.15909 4.19499 4.20709 4.22559 4.27368 4.38716 4.50351 4.53468 4.56763 4.68031 4.74947 4.75712 4.80681 4.83432 4.91910 4.92687 4.96875 4.99244 5.03172 5.07456 5.10951 5.19709 5.25017 5.35075 5.39700 5.55665 5.59258 5.73466 6.30906 6.37700 6.45997 7.04518 7.08109 7.14138 7.14805 7.88297 8.28548 9.15998 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012943 B = 0.002525 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.738301 B =11087.218533 C =12369.971791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.514 3.486 4 O -0.596 6.596 5 N -0.622 5.622 6 C 0.099 3.901 7 C -0.115 4.115 8 C -0.107 4.107 9 H 0.144 0.856 10 C 0.512 3.488 11 O -0.591 6.591 12 N -0.599 5.599 13 C 0.071 3.929 14 C 0.093 3.907 15 C 0.095 3.905 16 H 0.045 0.955 17 O -0.556 6.556 18 C 0.121 3.879 19 N -0.610 5.610 20 C 0.186 3.814 21 C -0.263 4.263 22 H 0.054 0.946 23 C -0.050 4.050 24 N -0.934 5.934 25 Si 0.961 3.039 26 H -0.283 1.283 27 H -0.287 1.287 28 H -0.279 1.279 29 C 0.122 3.878 30 H 0.039 0.961 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.126 0.874 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.086 0.914 37 H 0.132 0.868 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.119 0.881 43 H 0.069 0.931 44 H 0.379 0.621 45 H 0.071 0.929 46 H 0.039 0.961 47 H 0.000 1.000 48 H 0.003 0.997 49 H 0.044 0.956 50 H 0.249 0.751 51 H 0.045 0.955 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.820 -17.110 -22.290 30.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.306 3.694 4 O -0.477 6.477 5 N -0.356 5.356 6 C -0.023 4.023 7 C -0.153 4.153 8 C -0.129 4.129 9 H 0.162 0.838 10 C 0.300 3.700 11 O -0.472 6.472 12 N -0.330 5.330 13 C -0.070 4.070 14 C -0.031 4.031 15 C 0.032 3.968 16 H 0.064 0.936 17 O -0.362 6.362 18 C -0.006 4.006 19 N -0.333 5.333 20 C 0.042 3.958 21 C -0.393 4.393 22 H 0.071 0.929 23 C -0.246 4.246 24 N -0.580 5.580 25 Si 0.790 3.210 26 H -0.210 1.210 27 H -0.212 1.212 28 H -0.205 1.205 29 C -0.002 4.002 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.144 0.856 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.104 0.896 37 H 0.151 0.849 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.114 0.886 41 H 0.110 0.890 42 H 0.137 0.863 43 H 0.087 0.913 44 H 0.227 0.773 45 H 0.089 0.911 46 H 0.058 0.942 47 H 0.019 0.981 48 H 0.022 0.978 49 H 0.062 0.938 50 H 0.058 0.942 51 H 0.063 0.937 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.771 -16.436 -21.374 29.834 hybrid contribution 0.050 1.101 1.353 1.745 sum -12.721 -15.335 -20.022 28.246 Atomic orbital electron populations 1.21562 0.93600 1.02804 1.01691 1.21690 0.97914 0.90424 1.06797 1.21448 0.79997 0.93403 0.74591 1.90696 1.55745 1.48824 1.52429 1.48717 1.05871 1.08051 1.72939 1.22386 0.84466 0.90601 1.04802 1.22787 0.97868 0.92182 1.02501 1.22363 0.91947 0.94885 1.03667 0.83800 1.20827 0.83475 0.86132 0.79544 1.90740 1.78509 1.38274 1.39681 1.47788 1.07345 1.27554 1.50292 1.22237 1.01989 0.88902 0.93910 1.22159 0.93243 0.91238 0.96482 1.22627 0.92261 0.87022 0.94874 0.93628 1.86591 1.46809 1.35289 1.67532 1.21517 0.96082 0.95088 0.87901 1.43909 1.21398 1.66611 1.01367 1.20471 0.85816 0.93390 0.96152 1.19320 0.90771 1.42698 0.86549 0.92865 1.25681 0.96328 1.01352 1.01199 1.70204 1.05894 1.55560 1.26371 0.85437 0.77587 0.78040 0.79984 1.20975 1.21241 1.20468 1.21805 0.92354 0.85708 1.00291 0.94162 0.93397 0.89165 0.85565 0.86776 0.86717 0.89607 0.84941 0.92236 0.91434 0.88597 0.89024 0.86334 0.91284 0.77327 0.91119 0.94228 0.98131 0.97823 0.93756 0.94178 0.93686 0.91724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.20 71.98 0.66 -1.19 16 2 C -0.13 -1.43 5.61 29.85 0.17 -1.26 16 3 C 0.51 11.18 7.85 87.66 0.69 11.87 16 4 O -0.60 -19.34 16.24 -3.03 -0.05 -19.39 16 5 N -0.62 -11.76 3.33 -811.68 -2.70 -14.46 16 6 C 0.10 0.92 6.49 86.73 0.56 1.48 16 7 C -0.12 -1.33 5.56 31.78 0.18 -1.15 16 8 C -0.11 -1.82 2.43 -10.15 -0.02 -1.85 16 9 H 0.14 1.47 7.41 -2.39 -0.02 1.46 16 10 C 0.51 13.28 7.06 87.66 0.62 13.90 16 11 O -0.59 -22.35 15.34 -3.04 -0.05 -22.39 16 12 N -0.60 -12.34 2.84 -846.75 -2.40 -14.74 16 13 C 0.07 0.69 8.63 127.77 1.10 1.79 16 14 C 0.09 2.25 5.11 86.38 0.44 2.69 16 15 C 0.10 3.16 3.48 30.60 0.11 3.27 16 16 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 17 O -0.56 -16.42 11.70 -148.98 -1.74 -18.16 16 18 C 0.12 4.76 5.34 86.38 0.46 5.22 16 19 N -0.61 -31.20 2.84 -726.92 -2.07 -33.26 16 20 C 0.19 9.19 8.66 127.77 1.11 10.29 16 21 C -0.26 -15.34 9.65 84.03 0.81 -14.53 16 22 H 0.05 3.16 7.87 -2.91 -0.02 3.14 16 23 C -0.05 -2.96 5.09 84.86 0.43 -2.53 16 24 N -0.93 -56.89 10.76 21.65 0.23 -56.66 16 25 Si 0.96 47.79 29.58 68.60 2.03 49.82 16 26 H -0.28 -13.89 7.11 99.48 0.71 -13.19 16 27 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 28 H -0.28 -13.55 7.11 99.48 0.71 -12.85 16 29 C 0.12 2.99 6.00 86.85 0.52 3.51 16 30 H 0.04 0.70 8.10 -2.38 -0.02 0.69 16 31 H 0.05 0.76 8.10 -2.39 -0.02 0.75 16 32 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.11 0.24 8.14 -2.38 -0.02 0.22 16 36 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.13 0.54 6.63 -2.39 -0.02 0.52 16 38 H 0.06 1.06 8.03 -2.39 -0.02 1.05 16 39 H 0.07 0.70 7.76 -2.39 -0.02 0.69 16 40 H 0.10 0.39 6.03 -2.38 -0.01 0.37 16 41 H 0.09 0.56 7.89 -2.39 -0.02 0.54 16 42 H 0.12 1.90 7.89 -2.39 -0.02 1.88 16 43 H 0.07 2.02 7.42 -2.39 -0.02 2.00 16 44 H 0.38 7.69 8.79 -74.06 -0.65 7.04 16 45 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 46 H 0.04 1.67 8.04 -2.39 -0.02 1.65 16 47 H 0.00 0.02 7.33 -2.38 -0.02 0.01 16 48 H 0.00 0.16 7.37 -2.38 -0.02 0.14 16 49 H 0.04 1.74 7.00 -2.39 -0.02 1.73 16 50 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 51 H 0.04 1.44 7.45 -2.39 -0.02 1.42 16 52 H 0.06 1.78 8.04 -2.39 -0.02 1.76 16 Total: -1.00 -90.44 412.49 1.34 -89.10 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 0.25 Total: 8.63 kcal Atomic # 6 Polarization: 23.69 SS G_CDS: 7.83 Total: 31.53 kcal Atomic # 7 Polarization: -112.19 SS G_CDS: -6.94 Total: -119.13 kcal Atomic # 8 Polarization: -58.11 SS G_CDS: -1.84 Total: -59.95 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.82 kcal Total: -90.44 1.34 -89.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486355811.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.133 kcal (2) G-P(sol) polarization free energy of solvation -90.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds