Wall clock time and date at job start Wed Apr 1 2020 01:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 114.00032 * 2 1 4 4 C 1.53000 * 109.47311 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47058 * 179.97438 * 4 3 2 6 6 O 1.21281 * 120.00580 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99941 * 179.97438 * 5 4 3 8 8 C 1.46500 * 119.99944 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.47381 * 325.00307 * 8 7 5 10 10 C 1.52999 * 109.46944 * 85.00803 * 8 7 5 11 11 C 1.53006 * 109.47249 * 205.00159 * 8 7 5 12 12 C 1.53112 * 109.52104 * 299.87900 * 11 8 7 13 13 C 1.53048 * 109.27319 * 182.50237 * 12 11 8 14 14 N 1.46840 * 109.57592 * 59.08379 * 13 12 11 15 15 C 1.46902 * 111.00039 * 174.19360 * 14 13 12 16 16 C 1.50696 * 109.47062 * 294.20473 * 15 14 13 17 17 O 1.21289 * 120.00163 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99772 * 179.97438 * 16 15 14 19 19 C 1.37105 * 119.99808 * 180.02562 * 18 16 15 20 20 H 1.07999 * 119.99973 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99726 * 180.02562 * 19 18 16 22 22 N 1.31412 * 120.00423 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99684 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46905 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47059 * 120.00294 * 23 21 19 26 26 H 1.48499 * 109.46910 * 239.99817 * 23 21 19 27 27 C 1.46850 * 111.19681 * 298.29076 * 14 13 12 28 28 C 1.53029 * 109.52255 * 61.74243 * 27 14 13 29 29 H 1.09001 * 109.47584 * 59.99907 * 1 2 3 30 30 H 1.09000 * 109.47002 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47095 * 299.99769 * 1 2 3 32 32 H 1.08993 * 109.47524 * 59.99779 * 3 2 1 33 33 H 1.09000 * 109.47152 * 300.00012 * 3 2 1 34 34 H 1.09005 * 109.47030 * 60.00160 * 4 3 2 35 35 H 1.09000 * 109.46985 * 300.00068 * 4 3 2 36 36 H 0.96998 * 120.00178 * 0.02562 * 7 5 4 37 37 H 1.09001 * 109.47362 * 180.02562 * 10 8 7 38 38 H 1.09002 * 109.46716 * 299.99651 * 10 8 7 39 39 H 1.09000 * 109.47486 * 59.99569 * 10 8 7 40 40 H 1.09004 * 109.51986 * 60.00128 * 11 8 7 41 41 H 1.08996 * 109.50857 * 302.37585 * 12 11 8 42 42 H 1.08995 * 109.51130 * 62.49943 * 12 11 8 43 43 H 1.08999 * 109.40834 * 299.06374 * 13 12 11 44 44 H 1.09001 * 109.45676 * 179.12397 * 13 12 11 45 45 H 1.08997 * 109.47322 * 54.21146 * 15 14 13 46 46 H 1.09004 * 109.46834 * 174.20495 * 15 14 13 47 47 H 0.97000 * 120.00217 * 0.02562 * 18 16 15 48 48 H 0.96995 * 120.00033 * 179.97438 * 22 21 19 49 49 H 1.09001 * 109.46089 * 301.72464 * 27 14 13 50 50 H 1.09006 * 109.45416 * 181.75362 * 27 14 13 51 51 H 1.09010 * 109.50481 * 180.88053 * 28 27 14 52 52 H 1.08997 * 109.54108 * 60.78590 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1483 2.5614 -0.0013 6 8 3.4355 3.5427 -0.0008 7 7 5.4887 2.7023 -0.0014 8 6 6.0845 4.0407 -0.0026 9 1 5.4633 4.7145 -0.5926 10 6 6.1772 4.5589 1.4340 11 6 7.4863 3.9744 -0.6122 12 6 8.3610 3.0305 0.2176 13 6 9.7782 3.0167 -0.3600 14 7 10.3325 4.3763 -0.3362 15 6 11.7405 4.3782 -0.7552 16 6 12.5674 3.6304 0.2588 17 8 12.0360 3.1433 1.2342 18 7 13.8972 3.5020 0.0811 19 6 14.6494 2.8212 1.0033 20 1 14.1763 2.3882 1.8723 21 6 16.0204 2.6892 0.8204 22 7 16.5961 3.2165 -0.2367 23 14 17.0454 1.7623 2.0774 24 1 16.1653 1.2697 3.1673 25 1 17.7120 0.6099 1.4196 26 1 18.0738 2.6711 2.6446 27 6 9.5354 5.2892 -1.1654 28 6 8.1115 5.3721 -0.6110 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8567 0.6440 -0.8909 35 1 3.8574 0.6436 0.8891 36 1 6.0589 1.9176 -0.0014 37 1 6.6201 5.5549 1.4332 38 1 5.1786 4.6062 1.8683 39 1 6.7985 3.8851 2.0240 40 1 7.4213 3.6052 -1.6357 41 1 8.3933 3.3778 1.2502 42 1 7.9437 2.0242 0.1844 43 1 9.7470 2.6551 -1.3877 44 1 10.4075 2.3575 0.2380 45 1 11.8311 3.8929 -1.7270 46 1 12.0966 5.4058 -0.8277 47 1 14.3221 3.8911 -0.6992 48 1 17.5533 3.1247 -0.3641 49 1 9.5054 4.9170 -2.1895 50 1 9.9885 6.2805 -1.1525 51 1 7.5158 6.0377 -1.2359 52 1 8.1389 5.7577 0.4081 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486442071.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:32 Heat of formation + Delta-G solvation = -125.943017 kcal Electronic energy + Delta-G solvation = -29927.068027 eV Core-core repulsion = 25733.218559 eV Total energy + Delta-G solvation = -4193.849469 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.44532 -39.29816 -38.21973 -37.80515 -35.91646 -33.93582 -33.13522 -32.07514 -31.25105 -30.72013 -29.84787 -27.20399 -27.02131 -25.14836 -24.27740 -23.39487 -23.09948 -21.22932 -20.47782 -19.21343 -19.11787 -17.86114 -17.77665 -16.71246 -16.40773 -16.21127 -15.98154 -15.51879 -15.23763 -15.12744 -14.99742 -14.64427 -14.58909 -13.99556 -13.98519 -13.78347 -13.66250 -13.43617 -13.09866 -12.90655 -12.74297 -12.31530 -12.23222 -12.05472 -11.85316 -11.80553 -11.58431 -11.52920 -11.48709 -11.38319 -11.05469 -10.89766 -10.68337 -10.43817 -10.34984 -10.23151 -10.12084 -10.08647 -10.07129 -9.47314 -9.30185 -8.42215 -7.97625 -7.82161 -6.42213 -3.82932 2.35729 2.70354 3.15633 3.26327 3.33269 3.56906 3.90249 4.00010 4.24247 4.37763 4.52271 4.61631 4.69562 4.73590 4.75459 4.95047 4.97337 5.06623 5.10655 5.16958 5.23528 5.24961 5.26652 5.31151 5.37836 5.40343 5.43518 5.47058 5.58201 5.65544 5.69600 5.78388 5.79183 5.84532 5.88548 5.99878 6.05633 6.12900 6.19545 6.28409 6.30657 6.46105 6.53122 6.70772 7.23221 7.32653 7.45768 7.54983 7.94174 8.06575 8.61645 9.17989 9.54577 10.06286 10.75617 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019010 B = 0.001778 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.550136 B =15742.366835 C =16704.731571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.396 6.396 3 C 0.077 3.923 4 C -0.142 4.142 5 C 0.519 3.481 6 O -0.545 6.545 7 N -0.722 5.722 8 C 0.149 3.851 9 H 0.086 0.914 10 C -0.167 4.167 11 C -0.097 4.097 12 C -0.110 4.110 13 C 0.053 3.947 14 N -0.514 5.514 15 C 0.046 3.954 16 C 0.444 3.556 17 O -0.577 6.577 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.055 3.945 28 C -0.108 4.108 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.402 0.598 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.019 0.981 44 H 0.104 0.896 45 H 0.046 0.954 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.028 0.972 50 H 0.074 0.926 51 H 0.065 0.935 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.978 -0.803 -4.202 25.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C 0.000 4.000 4 C -0.182 4.182 5 C 0.305 3.695 6 O -0.423 6.423 7 N -0.374 5.374 8 C 0.045 3.955 9 H 0.104 0.896 10 C -0.225 4.225 11 C -0.116 4.116 12 C -0.147 4.147 13 C -0.075 4.075 14 N -0.239 5.239 15 C -0.085 4.085 16 C 0.230 3.770 17 O -0.461 6.461 18 N -0.202 5.202 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.073 4.073 28 C -0.146 4.146 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.238 0.762 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.076 0.924 43 H 0.037 0.963 44 H 0.122 0.878 45 H 0.064 0.936 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.080 0.920 49 H 0.046 0.954 50 H 0.093 0.907 51 H 0.084 0.916 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -25.551 -0.423 -3.114 25.744 hybrid contribution 1.111 -0.622 -0.858 1.535 sum -24.440 -1.045 -3.972 24.783 Atomic orbital electron populations 1.22737 0.80543 1.02795 1.00222 1.87806 1.20116 1.28020 1.95572 1.22151 0.91901 0.84213 1.01759 1.21494 0.95539 0.95348 1.05854 1.20377 0.82488 0.90967 0.75681 1.90709 1.61031 1.40778 1.49771 1.46178 1.06437 1.09787 1.75042 1.20986 0.93647 0.83520 0.97393 0.89624 1.22279 1.02071 1.02051 0.96084 1.21512 0.93043 0.97440 0.99570 1.21673 0.94287 0.97861 1.00915 1.22235 0.95811 0.90662 0.98773 1.61494 1.00612 1.08878 1.52867 1.21835 0.88856 1.01296 0.96538 1.19754 0.82996 0.85739 0.88545 1.90476 1.71351 1.52459 1.31853 1.41886 1.05592 1.49036 1.23663 1.19746 0.89251 1.29863 1.03892 0.87865 1.25254 0.97112 0.97995 0.97591 1.69618 1.11791 1.45309 1.27625 0.85813 0.79476 0.78897 0.80232 1.19236 1.20807 1.20767 1.22087 0.93759 0.97325 0.94117 1.21628 0.94815 0.95457 1.02705 0.93939 0.89494 0.93922 0.92370 0.92418 0.87963 0.87870 0.76227 0.91037 0.92597 0.91627 0.91089 0.90069 0.92353 0.96269 0.87791 0.93638 0.89406 0.77524 0.91952 0.95398 0.90730 0.91600 0.90200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.40 -3.54 10.70 -35.23 -0.38 -3.92 16 3 C 0.08 0.65 5.23 37.16 0.19 0.85 16 4 C -0.14 -1.05 6.07 -27.88 -0.17 -1.22 16 5 C 0.52 5.07 7.79 -10.99 -0.09 4.99 16 6 O -0.55 -7.25 15.65 5.56 0.09 -7.16 16 7 N -0.72 -6.21 5.00 -53.80 -0.27 -6.48 16 8 C 0.15 1.42 2.41 -67.93 -0.16 1.26 16 9 H 0.09 0.92 7.58 -51.93 -0.39 0.53 16 10 C -0.17 -1.67 8.78 37.16 0.33 -1.34 16 11 C -0.10 -0.95 2.25 -90.50 -0.20 -1.15 16 12 C -0.11 -1.28 4.87 -26.65 -0.13 -1.41 16 13 C 0.05 0.80 5.10 -3.83 -0.02 0.78 16 14 N -0.51 -8.14 4.40 -236.11 -1.04 -9.18 16 15 C 0.05 0.80 5.45 -4.98 -0.03 0.78 16 16 C 0.44 10.23 7.46 -10.99 -0.08 10.15 16 17 O -0.58 -15.06 13.90 5.55 0.08 -14.99 16 18 N -0.57 -14.09 5.29 -10.96 -0.06 -14.15 16 19 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 20 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.33 13.05 55.50 0.72 -23.61 16 23 Si 0.93 20.86 29.55 -169.99 -5.02 15.83 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 C 0.06 0.67 5.46 -3.84 -0.02 0.65 16 28 C -0.11 -1.11 5.09 -26.66 -0.14 -1.25 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.52 8.10 -51.93 -0.42 0.09 16 33 H 0.06 0.51 8.10 -51.93 -0.42 0.08 16 34 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.40 2.75 6.92 -40.82 -0.28 2.47 16 37 H 0.07 0.69 6.38 -51.93 -0.33 0.35 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.68 6.38 -51.93 -0.33 0.35 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 1.07 6.31 -51.93 -0.33 0.74 16 42 H 0.06 0.56 6.61 -51.93 -0.34 0.22 16 43 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.10 1.97 5.78 -51.93 -0.30 1.67 16 45 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 46 H 0.09 1.39 7.99 -51.93 -0.41 0.98 16 47 H 0.39 9.38 7.90 -40.82 -0.32 9.05 16 48 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 49 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.07 0.86 8.02 -51.93 -0.42 0.44 16 51 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 52 H 0.08 0.88 6.31 -51.93 -0.33 0.55 16 LS Contribution 408.38 15.07 6.15 6.15 Total: -1.00 -32.71 408.38 -8.16 -40.87 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -8.79 Total: 10.08 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 0.36 Total: 6.54 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.64 Total: -53.41 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.21 Total: -26.07 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.71 -8.16 -40.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486442071.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.073 kcal (2) G-P(sol) polarization free energy of solvation -32.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds