Wall clock time and date at job start Wed Apr 1 2020 01:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 114.00032 * 2 1 4 4 C 1.53000 * 109.47311 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47058 * 179.97438 * 4 3 2 6 6 O 1.21281 * 120.00580 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99941 * 179.97438 * 5 4 3 8 8 C 1.46500 * 119.99944 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.47381 * 325.00307 * 8 7 5 10 10 C 1.52999 * 109.46944 * 85.00803 * 8 7 5 11 11 C 1.53006 * 109.47249 * 205.00159 * 8 7 5 12 12 C 1.53112 * 109.52104 * 299.87900 * 11 8 7 13 13 C 1.53048 * 109.27319 * 182.50237 * 12 11 8 14 14 N 1.46840 * 109.57592 * 59.08379 * 13 12 11 15 15 C 1.46902 * 111.00039 * 174.19360 * 14 13 12 16 16 C 1.50696 * 109.47062 * 294.20473 * 15 14 13 17 17 O 1.21289 * 120.00163 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99772 * 179.97438 * 16 15 14 19 19 C 1.37105 * 119.99808 * 180.02562 * 18 16 15 20 20 H 1.07999 * 119.99973 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99726 * 180.02562 * 19 18 16 22 22 N 1.31412 * 120.00423 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99684 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46905 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47059 * 120.00294 * 23 21 19 26 26 H 1.48499 * 109.46910 * 239.99817 * 23 21 19 27 27 C 1.46850 * 111.19681 * 298.29076 * 14 13 12 28 28 C 1.53029 * 109.52255 * 61.74243 * 27 14 13 29 29 H 1.09001 * 109.47584 * 59.99907 * 1 2 3 30 30 H 1.09000 * 109.47002 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47095 * 299.99769 * 1 2 3 32 32 H 1.08993 * 109.47524 * 59.99779 * 3 2 1 33 33 H 1.09000 * 109.47152 * 300.00012 * 3 2 1 34 34 H 1.09005 * 109.47030 * 60.00160 * 4 3 2 35 35 H 1.09000 * 109.46985 * 300.00068 * 4 3 2 36 36 H 0.96998 * 120.00178 * 0.02562 * 7 5 4 37 37 H 1.09001 * 109.47362 * 180.02562 * 10 8 7 38 38 H 1.09002 * 109.46716 * 299.99651 * 10 8 7 39 39 H 1.09000 * 109.47486 * 59.99569 * 10 8 7 40 40 H 1.09004 * 109.51986 * 60.00128 * 11 8 7 41 41 H 1.08996 * 109.50857 * 302.37585 * 12 11 8 42 42 H 1.08995 * 109.51130 * 62.49943 * 12 11 8 43 43 H 1.08999 * 109.40834 * 299.06374 * 13 12 11 44 44 H 1.09001 * 109.45676 * 179.12397 * 13 12 11 45 45 H 1.08997 * 109.47322 * 54.21146 * 15 14 13 46 46 H 1.09004 * 109.46834 * 174.20495 * 15 14 13 47 47 H 0.97000 * 120.00217 * 0.02562 * 18 16 15 48 48 H 0.96995 * 120.00033 * 179.97438 * 22 21 19 49 49 H 1.09001 * 109.46089 * 301.72464 * 27 14 13 50 50 H 1.09006 * 109.45416 * 181.75362 * 27 14 13 51 51 H 1.09010 * 109.50481 * 180.88053 * 28 27 14 52 52 H 1.08997 * 109.54108 * 60.78590 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1483 2.5614 -0.0013 6 8 3.4355 3.5427 -0.0008 7 7 5.4887 2.7023 -0.0014 8 6 6.0845 4.0407 -0.0026 9 1 5.4633 4.7145 -0.5926 10 6 6.1772 4.5589 1.4340 11 6 7.4863 3.9744 -0.6122 12 6 8.3610 3.0305 0.2176 13 6 9.7782 3.0167 -0.3600 14 7 10.3325 4.3763 -0.3362 15 6 11.7405 4.3782 -0.7552 16 6 12.5674 3.6304 0.2588 17 8 12.0360 3.1433 1.2342 18 7 13.8972 3.5020 0.0811 19 6 14.6494 2.8212 1.0033 20 1 14.1763 2.3882 1.8723 21 6 16.0204 2.6892 0.8204 22 7 16.5961 3.2165 -0.2367 23 14 17.0454 1.7623 2.0774 24 1 16.1653 1.2697 3.1673 25 1 17.7120 0.6099 1.4196 26 1 18.0738 2.6711 2.6446 27 6 9.5354 5.2892 -1.1654 28 6 8.1115 5.3721 -0.6110 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8567 0.6440 -0.8909 35 1 3.8574 0.6436 0.8891 36 1 6.0589 1.9176 -0.0014 37 1 6.6201 5.5549 1.4332 38 1 5.1786 4.6062 1.8683 39 1 6.7985 3.8851 2.0240 40 1 7.4213 3.6052 -1.6357 41 1 8.3933 3.3778 1.2502 42 1 7.9437 2.0242 0.1844 43 1 9.7470 2.6551 -1.3877 44 1 10.4075 2.3575 0.2380 45 1 11.8311 3.8929 -1.7270 46 1 12.0966 5.4058 -0.8277 47 1 14.3221 3.8911 -0.6992 48 1 17.5533 3.1247 -0.3641 49 1 9.5054 4.9170 -2.1895 50 1 9.9885 6.2805 -1.1525 51 1 7.5158 6.0377 -1.2359 52 1 8.1389 5.7577 0.4081 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486442071.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:31 Heat of formation + Delta-G solvation = -150.649133 kcal Electronic energy + Delta-G solvation = -29928.139365 eV Core-core repulsion = 25733.218559 eV Total energy + Delta-G solvation = -4194.920806 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.29862 -40.52705 -39.46080 -38.69918 -36.99938 -35.85728 -34.09493 -33.25527 -32.77175 -31.74324 -30.77980 -28.57308 -27.55088 -26.58840 -25.39583 -24.38856 -24.08978 -22.19689 -21.25197 -20.98947 -20.04144 -19.84383 -18.48439 -17.71252 -17.37728 -17.18102 -16.90676 -16.62809 -16.44267 -16.30363 -15.99753 -15.74966 -15.61343 -15.47515 -15.33330 -15.03987 -14.66204 -14.31721 -14.26475 -13.85579 -13.78159 -13.48987 -13.46916 -13.18092 -12.90263 -12.80575 -12.77535 -12.58083 -12.50930 -12.39140 -12.36927 -12.15546 -12.10952 -11.82329 -11.60184 -11.50974 -11.34264 -11.09487 -10.89992 -10.69136 -10.19850 -10.08409 -9.96724 -9.11025 -8.44744 -5.92956 1.37293 1.42505 1.56371 1.60364 2.01980 2.08728 2.29743 2.82923 2.96798 3.22470 3.42886 3.65331 3.74960 3.81149 3.92687 4.03211 4.13590 4.24524 4.29530 4.35372 4.39544 4.43763 4.50101 4.50924 4.51899 4.53425 4.55028 4.60461 4.65543 4.77725 4.82367 4.82956 4.84854 4.85843 4.92704 5.00197 5.05544 5.11040 5.25206 5.28464 5.31530 5.43137 5.52615 5.59412 5.95081 6.13191 6.16285 6.34787 6.53215 6.63543 7.15778 7.21878 7.59878 8.15791 8.72924 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019010 B = 0.001778 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.550136 B =15742.366835 C =16704.731571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.078 3.922 4 C -0.135 4.135 5 C 0.519 3.481 6 O -0.583 6.583 7 N -0.714 5.714 8 C 0.156 3.844 9 H 0.080 0.920 10 C -0.163 4.163 11 C -0.084 4.084 12 C -0.102 4.102 13 C 0.054 3.946 14 N -0.533 5.533 15 C 0.057 3.943 16 C 0.442 3.558 17 O -0.612 6.612 18 N -0.576 5.576 19 C -0.330 4.330 20 H 0.079 0.921 21 C -0.013 4.013 22 N -0.922 5.922 23 Si 0.991 3.009 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.272 1.272 27 C 0.055 3.945 28 C -0.106 4.106 29 H 0.048 0.952 30 H 0.102 0.898 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.412 0.588 37 H 0.075 0.925 38 H 0.044 0.956 39 H 0.060 0.940 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.030 0.970 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.107 0.893 47 H 0.395 0.605 48 H 0.276 0.724 49 H 0.041 0.959 50 H 0.083 0.917 51 H 0.089 0.911 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.637 -0.969 -5.216 26.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C 0.001 3.999 4 C -0.175 4.175 5 C 0.306 3.694 6 O -0.464 6.464 7 N -0.367 5.367 8 C 0.051 3.949 9 H 0.098 0.902 10 C -0.221 4.221 11 C -0.103 4.103 12 C -0.140 4.140 13 C -0.074 4.074 14 N -0.258 5.258 15 C -0.074 4.074 16 C 0.230 3.770 17 O -0.498 6.498 18 N -0.214 5.214 19 C -0.460 4.460 20 H 0.097 0.903 21 C -0.213 4.213 22 N -0.563 5.563 23 Si 0.815 3.185 24 H -0.198 1.198 25 H -0.197 1.197 26 H -0.198 1.198 27 C -0.072 4.072 28 C -0.144 4.144 29 H 0.067 0.933 30 H 0.120 0.880 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.250 0.750 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.048 0.952 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.125 0.875 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.059 0.941 50 H 0.101 0.899 51 H 0.108 0.892 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -26.206 -0.592 -4.151 26.539 hybrid contribution 1.249 -0.564 -0.537 1.471 sum -24.958 -1.156 -4.688 25.420 Atomic orbital electron populations 1.22936 0.79286 1.04015 1.00795 1.87775 1.21614 1.28079 1.95635 1.22109 0.92675 0.84096 1.01061 1.21470 0.94657 0.94002 1.07379 1.20753 0.82485 0.91395 0.74719 1.90696 1.61878 1.42180 1.51626 1.46112 1.06342 1.09886 1.74328 1.20843 0.93301 0.83922 0.96816 0.90194 1.22232 1.01245 1.02257 0.96321 1.21390 0.92427 0.96805 0.99630 1.21602 0.92779 0.99632 0.99962 1.22129 0.96750 0.89796 0.98693 1.61482 1.00106 1.09776 1.54465 1.21708 0.89242 1.01404 0.95028 1.20796 0.82658 0.84656 0.88922 1.90457 1.71954 1.53613 1.33728 1.41955 1.06346 1.49534 1.23563 1.19688 0.90290 1.31635 1.04340 0.90313 1.26004 0.97548 0.98399 0.99329 1.69677 1.12342 1.45691 1.28581 0.84892 0.77764 0.77986 0.77820 1.19810 1.19673 1.19754 1.22196 0.94076 0.96750 0.94195 1.21641 0.94052 0.96060 1.02660 0.93313 0.88007 0.93440 0.93258 0.93036 0.86162 0.86447 0.75005 0.90653 0.93684 0.92135 0.89960 0.91801 0.90323 0.95160 0.92212 0.91873 0.87452 0.77134 0.91407 0.94112 0.89854 0.89239 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -6.89 10.70 -148.98 -1.59 -8.48 16 3 C 0.08 1.26 5.23 71.98 0.38 1.63 16 4 C -0.14 -1.78 6.07 29.85 0.18 -1.60 16 5 C 0.52 9.48 7.79 87.66 0.68 10.16 16 6 O -0.58 -15.20 15.65 -3.03 -0.05 -15.25 16 7 N -0.71 -10.99 5.00 -442.52 -2.21 -13.20 16 8 C 0.16 2.72 2.41 44.99 0.11 2.83 16 9 H 0.08 1.57 7.58 -2.39 -0.02 1.55 16 10 C -0.16 -3.12 8.78 71.98 0.63 -2.49 16 11 C -0.08 -1.45 2.25 -10.72 -0.02 -1.47 16 12 C -0.10 -2.25 4.87 30.65 0.15 -2.10 16 13 C 0.05 1.61 5.10 86.33 0.44 2.05 16 14 N -0.53 -16.28 4.40 -900.92 -3.96 -20.24 16 15 C 0.06 1.95 5.45 85.56 0.47 2.41 16 16 C 0.44 20.73 7.46 87.66 0.65 21.38 16 17 O -0.61 -33.02 13.90 -3.06 -0.04 -33.06 16 18 N -0.58 -29.34 5.29 -306.99 -1.62 -30.96 16 19 C -0.33 -18.62 9.68 84.04 0.81 -17.81 16 20 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 21 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 22 N -0.92 -49.56 13.05 21.66 0.28 -49.28 16 23 Si 0.99 42.81 29.55 68.60 2.03 44.83 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 27 C 0.06 1.20 5.46 86.32 0.47 1.67 16 28 C -0.11 -1.92 5.09 30.64 0.16 -1.76 16 29 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 33 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 34 H 0.12 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.41 4.67 6.92 -92.71 -0.64 4.03 16 37 H 0.07 1.37 6.38 -2.39 -0.02 1.36 16 38 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.06 1.22 6.38 -2.39 -0.02 1.20 16 40 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.06 1.66 6.31 -2.39 -0.02 1.64 16 42 H 0.08 1.38 6.61 -2.39 -0.02 1.37 16 43 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.06 2.33 5.78 -2.39 -0.01 2.31 16 45 H 0.06 1.93 8.12 -2.39 -0.02 1.91 16 46 H 0.11 3.22 7.99 -2.38 -0.02 3.20 16 47 H 0.40 19.16 7.90 -92.71 -0.73 18.43 16 48 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 49 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.08 1.68 8.02 -2.38 -0.02 1.66 16 51 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 52 H 0.07 1.44 6.31 -2.39 -0.02 1.43 16 Total: -1.00 -72.21 408.38 -0.79 -73.01 By element: Atomic # 1 Polarization: 36.88 SS G_CDS: -0.44 Total: 36.44 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: 6.82 Total: 16.19 kcal Atomic # 7 Polarization: -106.16 SS G_CDS: -7.51 Total: -113.68 kcal Atomic # 8 Polarization: -55.11 SS G_CDS: -1.68 Total: -56.79 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -72.21 -0.79 -73.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486442071.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.643 kcal (2) G-P(sol) polarization free energy of solvation -72.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds