Wall clock time and date at job start Wed Apr 1 2020 01:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 114.00228 * 2 1 4 4 C 1.53002 * 109.46942 * 180.02562 * 3 2 1 5 5 C 1.53008 * 109.46846 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.46846 * 179.97438 * 5 4 3 7 7 H 1.08992 * 109.47458 * 305.00167 * 6 5 4 8 8 C 1.53009 * 109.47002 * 65.00004 * 6 5 4 9 9 C 1.50696 * 109.47184 * 184.99708 * 6 5 4 10 10 O 1.21286 * 120.00055 * 329.88928 * 9 6 5 11 11 N 1.34777 * 120.00162 * 149.88271 * 9 6 5 12 12 C 1.47022 * 125.65098 * 174.93744 * 11 9 6 13 13 C 1.54319 * 107.40222 * 178.82997 * 12 11 9 14 14 C 1.55402 * 102.83146 * 337.97911 * 13 12 11 15 15 H 1.08998 * 110.89263 * 277.27103 * 14 13 12 16 16 N 1.46901 * 111.07068 * 153.48092 * 14 13 12 17 17 C 1.46906 * 110.99483 * 92.66953 * 16 14 13 18 18 C 1.50699 * 109.46713 * 180.02562 * 17 16 14 19 19 O 1.21289 * 120.00523 * 359.97438 * 18 17 16 20 20 N 1.34784 * 119.99774 * 180.02562 * 18 17 16 21 21 C 1.37093 * 119.99998 * 179.97438 * 20 18 17 22 22 H 1.08004 * 120.00183 * 0.02562 * 21 20 18 23 23 C 1.38944 * 119.99975 * 179.97438 * 21 20 18 24 24 N 1.31408 * 120.00307 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99975 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47487 * 89.99931 * 25 23 21 27 27 H 1.48503 * 109.47184 * 209.99815 * 25 23 21 28 28 H 1.48500 * 109.47310 * 329.99473 * 25 23 21 29 29 C 1.47426 * 125.64645 * 354.90381 * 11 9 6 30 30 H 1.09006 * 109.46532 * 300.00008 * 1 2 3 31 31 H 1.08998 * 109.47114 * 59.99111 * 1 2 3 32 32 H 1.08996 * 109.47849 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46791 * 60.00616 * 3 2 1 34 34 H 1.08994 * 109.47893 * 300.00546 * 3 2 1 35 35 H 1.09000 * 109.46978 * 60.00604 * 4 3 2 36 36 H 1.08993 * 109.47385 * 300.00112 * 4 3 2 37 37 H 1.09000 * 109.47194 * 60.00301 * 5 4 3 38 38 H 1.09003 * 109.46806 * 300.00039 * 5 4 3 39 39 H 1.08998 * 109.46751 * 53.62775 * 8 6 5 40 40 H 1.08994 * 109.47231 * 173.62257 * 8 6 5 41 41 H 1.08996 * 109.46939 * 293.62577 * 8 6 5 42 42 H 1.09002 * 109.88355 * 298.33026 * 12 11 9 43 43 H 1.09000 * 109.87615 * 59.33832 * 12 11 9 44 44 H 1.09001 * 110.72057 * 96.25108 * 13 12 11 45 45 H 1.08997 * 110.72342 * 219.52039 * 13 12 11 46 46 H 1.00900 * 111.00421 * 328.71668 * 16 14 13 47 47 H 1.08999 * 109.46671 * 299.99512 * 17 16 14 48 48 H 1.08991 * 109.47324 * 59.99539 * 17 16 14 49 49 H 0.97002 * 119.99402 * 359.97438 * 20 18 17 50 50 H 0.96999 * 120.00753 * 180.02562 * 24 23 21 51 51 H 1.08999 * 110.36348 * 323.00007 * 29 11 9 52 52 H 1.09003 * 110.36660 * 85.20976 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1844 -0.0006 5 6 4.1579 2.5822 0.0000 6 6 5.6831 2.4613 0.0000 7 1 5.9987 1.8447 0.8415 8 6 6.1434 1.8138 -1.3077 9 6 6.2957 3.8325 0.1244 10 8 5.7158 4.7988 -0.3240 11 7 7.4880 3.9852 0.7340 12 6 8.2458 5.2412 0.8318 13 6 9.5282 4.9450 1.6375 14 6 9.1490 3.6639 2.4312 15 1 8.5928 3.9163 3.3339 16 7 10.3423 2.8709 2.7556 17 6 10.8706 3.2319 4.0780 18 6 12.0918 2.4003 4.3750 19 8 12.4832 1.5867 3.5652 20 7 12.7484 2.5600 5.5412 21 6 13.8590 1.8031 5.8117 22 1 14.2080 1.0792 5.0902 23 6 14.5363 1.9681 7.0137 24 7 15.6011 1.2430 7.2728 25 14 13.9331 3.2207 8.2613 26 1 12.9637 2.5749 9.1823 27 1 15.0865 3.7384 9.0403 28 1 13.2697 4.3448 7.5531 29 6 8.2481 2.9203 1.4137 30 1 -0.3632 0.5139 0.8901 31 1 -0.3633 0.5140 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6887 1.8462 0.8901 34 1 1.6887 1.8464 -0.8898 35 1 3.8567 0.6438 -0.8909 36 1 3.8575 0.6434 0.8890 37 1 3.8367 3.1226 0.8905 38 1 3.8359 3.1237 -0.8896 39 1 5.7324 2.3678 -2.1517 40 1 7.2320 1.8304 -1.3579 41 1 5.7936 0.7822 -1.3451 42 1 8.5079 5.5948 -0.1654 43 1 7.6499 5.9944 1.3472 44 1 10.3671 4.7500 0.9693 45 1 9.7568 5.7677 2.3150 46 1 11.0495 2.9738 2.0433 47 1 11.1401 4.2881 4.0855 48 1 10.1103 3.0455 4.8363 49 1 12.4351 3.2105 6.1890 50 1 16.0737 1.3579 8.1120 51 1 7.5701 2.2422 1.9319 52 1 8.8571 2.3713 0.6955 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490849467.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:24 Heat of formation + Delta-G solvation = -121.955843 kcal Electronic energy + Delta-G solvation = -29290.564423 eV Core-core repulsion = 25096.887851 eV Total energy + Delta-G solvation = -4193.676572 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.54333 -38.80457 -38.39700 -37.88055 -35.82925 -34.82620 -33.88885 -32.00325 -31.70587 -30.57000 -29.06458 -27.55118 -26.36870 -26.02658 -24.58740 -23.73771 -22.64830 -21.34912 -20.93645 -19.48369 -19.13014 -18.43919 -17.57090 -16.73478 -16.62192 -16.59043 -16.29885 -15.67171 -15.50045 -15.15169 -14.97158 -14.86350 -14.55437 -14.07435 -13.88993 -13.75651 -13.42613 -13.36188 -13.09603 -13.04781 -12.76161 -12.63217 -12.51741 -12.25265 -12.16603 -12.08829 -12.04368 -11.77737 -11.71774 -11.59318 -11.48338 -11.20147 -11.12287 -11.03605 -10.96233 -10.63446 -10.08114 -10.01756 -9.92074 -9.61860 -8.91293 -8.66453 -8.28337 -8.21684 -6.34989 -3.86798 2.39421 2.65450 2.98669 3.03662 3.12240 3.33612 3.67531 3.83226 4.06415 4.21467 4.35164 4.37411 4.49599 4.53229 4.69519 4.74326 4.79550 4.84237 4.89216 4.92839 4.99583 5.00641 5.08727 5.10111 5.18030 5.18481 5.25178 5.27815 5.38653 5.42870 5.48570 5.49261 5.53568 5.57121 5.62348 5.67667 5.72040 5.73851 5.76820 5.88802 5.92728 5.93927 6.03305 6.74304 6.93455 7.25152 7.40966 7.53375 7.92672 8.09842 8.54826 8.90588 9.37804 9.77037 10.77992 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014481 B = 0.001736 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.161342 B =16125.166704 C =17113.765575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.060 3.940 4 C -0.120 4.120 5 C -0.099 4.099 6 C -0.106 4.106 7 H 0.095 0.905 8 C -0.141 4.141 9 C 0.535 3.465 10 O -0.544 6.544 11 N -0.619 5.619 12 C 0.111 3.889 13 C -0.166 4.166 14 C 0.078 3.922 15 H 0.094 0.906 16 N -0.656 5.656 17 C 0.049 3.951 18 C 0.448 3.552 19 O -0.565 6.565 20 N -0.589 5.589 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.108 3.892 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.356 0.644 47 H 0.047 0.953 48 H 0.089 0.911 49 H 0.371 0.629 50 H 0.274 0.726 51 H 0.083 0.917 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.653 5.754 -12.968 29.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.016 4.016 4 C -0.157 4.157 5 C -0.137 4.137 6 C -0.127 4.127 7 H 0.113 0.887 8 C -0.199 4.199 9 C 0.324 3.676 10 O -0.421 6.421 11 N -0.353 5.353 12 C -0.012 4.012 13 C -0.206 4.206 14 C -0.034 4.034 15 H 0.112 0.888 16 N -0.288 5.288 17 C -0.084 4.084 18 C 0.234 3.766 19 O -0.447 6.447 20 N -0.228 5.228 21 C -0.435 4.435 22 H 0.138 0.862 23 C -0.161 4.161 24 N -0.520 5.520 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 C -0.015 4.015 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.177 0.823 47 H 0.065 0.935 48 H 0.107 0.893 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.101 0.899 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -25.809 4.933 -13.407 29.499 hybrid contribution -0.024 2.137 1.088 2.398 sum -25.833 7.071 -12.319 29.481 Atomic orbital electron populations 1.22740 0.81000 1.02790 0.99975 1.87872 1.19744 1.28197 1.95437 1.22554 0.94225 0.84549 1.00293 1.21570 0.92914 0.97419 1.03824 1.21344 0.92376 0.96388 1.03585 1.21284 0.96463 0.93700 1.01261 0.88696 1.21756 1.01747 1.01107 0.95287 1.20354 0.79177 0.91236 0.76842 1.90690 1.60943 1.41733 1.48773 1.48528 1.19933 1.11340 1.55531 1.21823 0.91993 0.86900 1.00461 1.23494 0.97303 1.00118 0.99643 1.22779 0.92938 0.90261 0.97445 0.88822 1.59924 1.08546 1.56198 1.04097 1.21740 0.97182 0.97352 0.92099 1.19665 0.86052 0.87249 0.83637 1.90572 1.68588 1.37989 1.47518 1.42202 1.27228 1.36783 1.16623 1.19431 1.02071 1.17961 1.04050 0.86245 1.25039 0.95999 0.97681 0.97367 1.69616 1.17950 1.39472 1.24929 0.86672 0.79277 0.81348 0.82066 1.19571 1.20173 1.19553 1.22316 0.94401 0.89874 0.94919 0.94069 0.94103 0.89592 0.93280 0.93240 0.90559 0.90816 0.91464 0.90557 0.91884 0.92014 0.90884 0.91502 0.91408 0.89994 0.89799 0.82324 0.93493 0.89299 0.79679 0.91564 0.89862 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.49 10.70 -35.23 -0.38 -3.87 16 3 C 0.06 0.44 5.94 37.16 0.22 0.66 16 4 C -0.12 -0.84 5.34 -26.73 -0.14 -0.98 16 5 C -0.10 -0.77 4.19 -26.73 -0.11 -0.88 16 6 C -0.11 -0.87 2.36 -91.77 -0.22 -1.08 16 7 H 0.09 0.68 6.50 -51.93 -0.34 0.34 16 8 C -0.14 -1.03 8.77 37.16 0.33 -0.71 16 9 C 0.53 5.94 6.89 -10.99 -0.08 5.87 16 10 O -0.54 -7.88 16.61 5.55 0.09 -7.79 16 11 N -0.62 -6.22 3.33 -170.52 -0.57 -6.79 16 12 C 0.11 1.05 6.86 -3.07 -0.02 1.03 16 13 C -0.17 -1.43 6.57 -24.77 -0.16 -1.59 16 14 C 0.08 0.76 3.38 -65.43 -0.22 0.54 16 15 H 0.09 0.88 7.83 -51.93 -0.41 0.48 16 16 N -0.66 -8.71 6.04 -105.58 -0.64 -9.35 16 17 C 0.05 0.72 6.03 -4.97 -0.03 0.69 16 18 C 0.45 9.61 7.82 -10.98 -0.09 9.52 16 19 O -0.56 -14.49 15.78 5.55 0.09 -14.40 16 20 N -0.59 -13.48 5.09 -10.96 -0.06 -13.53 16 21 C -0.31 -8.46 10.16 -14.94 -0.15 -8.61 16 22 H 0.12 3.78 7.39 -52.48 -0.39 3.40 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.27 13.96 55.50 0.77 -24.50 16 25 Si 0.88 18.88 27.74 -169.99 -4.71 14.16 16 26 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 27 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 28 H -0.27 -5.23 6.52 56.52 0.37 -4.86 16 29 C 0.11 1.00 6.29 -2.53 -0.02 0.98 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.52 6.71 -51.93 -0.35 0.17 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.65 8.02 -51.93 -0.42 0.23 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.44 6.89 -51.93 -0.36 0.08 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.08 0.71 7.76 -51.93 -0.40 0.31 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.36 4.95 7.90 -39.29 -0.31 4.63 16 47 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.09 1.17 8.08 -51.93 -0.42 0.75 16 49 H 0.37 7.40 5.76 -40.82 -0.24 7.16 16 50 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 51 H 0.08 0.70 6.87 -51.93 -0.36 0.35 16 52 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 419.10 15.07 6.32 6.32 Total: -1.00 -34.19 419.10 -7.82 -42.01 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -9.07 Total: 9.96 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: 0.33 Total: 7.78 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: -0.49 Total: -54.17 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.20 Total: -26.06 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -4.71 Total: 14.16 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -34.19 -7.82 -42.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490849467.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.943 kcal (2) G-P(sol) polarization free energy of solvation -34.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds