Wall clock time and date at job start Wed Apr 1 2020 01:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 114.00228 * 2 1 4 4 C 1.53002 * 109.46942 * 180.02562 * 3 2 1 5 5 C 1.53008 * 109.46846 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.46846 * 179.97438 * 5 4 3 7 7 H 1.08992 * 109.47458 * 305.00167 * 6 5 4 8 8 C 1.53009 * 109.47002 * 65.00004 * 6 5 4 9 9 C 1.50696 * 109.47184 * 184.99708 * 6 5 4 10 10 O 1.21286 * 120.00055 * 329.88928 * 9 6 5 11 11 N 1.34777 * 120.00162 * 149.88271 * 9 6 5 12 12 C 1.47022 * 125.65098 * 174.93744 * 11 9 6 13 13 C 1.54319 * 107.40222 * 178.82997 * 12 11 9 14 14 C 1.55402 * 102.83146 * 337.97911 * 13 12 11 15 15 H 1.08998 * 110.89263 * 277.27103 * 14 13 12 16 16 N 1.46901 * 111.07068 * 153.48092 * 14 13 12 17 17 C 1.46906 * 110.99483 * 92.66953 * 16 14 13 18 18 C 1.50699 * 109.46713 * 180.02562 * 17 16 14 19 19 O 1.21289 * 120.00523 * 359.97438 * 18 17 16 20 20 N 1.34784 * 119.99774 * 180.02562 * 18 17 16 21 21 C 1.37093 * 119.99998 * 179.97438 * 20 18 17 22 22 H 1.08004 * 120.00183 * 0.02562 * 21 20 18 23 23 C 1.38944 * 119.99975 * 179.97438 * 21 20 18 24 24 N 1.31408 * 120.00307 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99975 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47487 * 89.99931 * 25 23 21 27 27 H 1.48503 * 109.47184 * 209.99815 * 25 23 21 28 28 H 1.48500 * 109.47310 * 329.99473 * 25 23 21 29 29 C 1.47426 * 125.64645 * 354.90381 * 11 9 6 30 30 H 1.09006 * 109.46532 * 300.00008 * 1 2 3 31 31 H 1.08998 * 109.47114 * 59.99111 * 1 2 3 32 32 H 1.08996 * 109.47849 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46791 * 60.00616 * 3 2 1 34 34 H 1.08994 * 109.47893 * 300.00546 * 3 2 1 35 35 H 1.09000 * 109.46978 * 60.00604 * 4 3 2 36 36 H 1.08993 * 109.47385 * 300.00112 * 4 3 2 37 37 H 1.09000 * 109.47194 * 60.00301 * 5 4 3 38 38 H 1.09003 * 109.46806 * 300.00039 * 5 4 3 39 39 H 1.08998 * 109.46751 * 53.62775 * 8 6 5 40 40 H 1.08994 * 109.47231 * 173.62257 * 8 6 5 41 41 H 1.08996 * 109.46939 * 293.62577 * 8 6 5 42 42 H 1.09002 * 109.88355 * 298.33026 * 12 11 9 43 43 H 1.09000 * 109.87615 * 59.33832 * 12 11 9 44 44 H 1.09001 * 110.72057 * 96.25108 * 13 12 11 45 45 H 1.08997 * 110.72342 * 219.52039 * 13 12 11 46 46 H 1.00900 * 111.00421 * 328.71668 * 16 14 13 47 47 H 1.08999 * 109.46671 * 299.99512 * 17 16 14 48 48 H 1.08991 * 109.47324 * 59.99539 * 17 16 14 49 49 H 0.97002 * 119.99402 * 359.97438 * 20 18 17 50 50 H 0.96999 * 120.00753 * 180.02562 * 24 23 21 51 51 H 1.08999 * 110.36348 * 323.00007 * 29 11 9 52 52 H 1.09003 * 110.36660 * 85.20976 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1844 -0.0006 5 6 4.1579 2.5822 0.0000 6 6 5.6831 2.4613 0.0000 7 1 5.9987 1.8447 0.8415 8 6 6.1434 1.8138 -1.3077 9 6 6.2957 3.8325 0.1244 10 8 5.7158 4.7988 -0.3240 11 7 7.4880 3.9852 0.7340 12 6 8.2458 5.2412 0.8318 13 6 9.5282 4.9450 1.6375 14 6 9.1490 3.6639 2.4312 15 1 8.5928 3.9163 3.3339 16 7 10.3423 2.8709 2.7556 17 6 10.8706 3.2319 4.0780 18 6 12.0918 2.4003 4.3750 19 8 12.4832 1.5867 3.5652 20 7 12.7484 2.5600 5.5412 21 6 13.8590 1.8031 5.8117 22 1 14.2080 1.0792 5.0902 23 6 14.5363 1.9681 7.0137 24 7 15.6011 1.2430 7.2728 25 14 13.9331 3.2207 8.2613 26 1 12.9637 2.5749 9.1823 27 1 15.0865 3.7384 9.0403 28 1 13.2697 4.3448 7.5531 29 6 8.2481 2.9203 1.4137 30 1 -0.3632 0.5139 0.8901 31 1 -0.3633 0.5140 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6887 1.8462 0.8901 34 1 1.6887 1.8464 -0.8898 35 1 3.8567 0.6438 -0.8909 36 1 3.8575 0.6434 0.8890 37 1 3.8367 3.1226 0.8905 38 1 3.8359 3.1237 -0.8896 39 1 5.7324 2.3678 -2.1517 40 1 7.2320 1.8304 -1.3579 41 1 5.7936 0.7822 -1.3451 42 1 8.5079 5.5948 -0.1654 43 1 7.6499 5.9944 1.3472 44 1 10.3671 4.7500 0.9693 45 1 9.7568 5.7677 2.3150 46 1 11.0495 2.9738 2.0433 47 1 11.1401 4.2881 4.0855 48 1 10.1103 3.0455 4.8363 49 1 12.4351 3.2105 6.1890 50 1 16.0737 1.3579 8.1120 51 1 7.5701 2.2422 1.9319 52 1 8.8571 2.3713 0.6955 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490849467.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:23 Heat of formation + Delta-G solvation = -148.317305 kcal Electronic energy + Delta-G solvation = -29291.707541 eV Core-core repulsion = 25096.887851 eV Total energy + Delta-G solvation = -4194.819691 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.36420 -40.29119 -39.16044 -38.78448 -36.52661 -36.18152 -35.52198 -33.71976 -32.67174 -31.36770 -29.98381 -28.06755 -27.81040 -26.61289 -25.59703 -25.03551 -23.32761 -22.07983 -21.63892 -21.26837 -20.31036 -19.86849 -18.39298 -17.75136 -17.43976 -17.27508 -17.15452 -16.93829 -16.59676 -16.35624 -15.96217 -15.63784 -15.58364 -15.25011 -14.97193 -14.70446 -14.46891 -14.34469 -14.19477 -14.06380 -13.94806 -13.81047 -13.47034 -13.17700 -13.10529 -12.93392 -12.76993 -12.68711 -12.64660 -12.50388 -12.38491 -12.24245 -12.06127 -11.96082 -11.77984 -11.70090 -11.57880 -11.48584 -10.79148 -10.61013 -10.41273 -10.22108 -9.72524 -9.31307 -8.38904 -5.99768 1.32135 1.38062 1.46587 1.55118 1.87755 1.99393 2.25234 2.69572 2.84487 3.17827 3.25620 3.50825 3.69537 3.71449 3.85904 3.90943 4.02763 4.16467 4.17703 4.21303 4.26914 4.33926 4.36228 4.48367 4.49312 4.51561 4.53424 4.61227 4.62962 4.67922 4.71420 4.78664 4.82846 4.85580 4.88620 4.91288 4.97043 5.01373 5.05813 5.14356 5.25360 5.33720 5.37928 5.55079 5.92371 6.04632 6.23409 6.35117 6.45240 6.62126 6.91161 7.08961 7.43011 7.99773 8.78686 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014481 B = 0.001736 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.161342 B =16125.166704 C =17113.765575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.057 3.943 4 C -0.113 4.113 5 C -0.091 4.091 6 C -0.102 4.102 7 H 0.110 0.890 8 C -0.138 4.138 9 C 0.530 3.470 10 O -0.584 6.584 11 N -0.617 5.617 12 C 0.109 3.891 13 C -0.155 4.155 14 C 0.082 3.918 15 H 0.108 0.892 16 N -0.670 5.670 17 C 0.064 3.936 18 C 0.448 3.552 19 O -0.614 6.614 20 N -0.591 5.591 21 C -0.328 4.328 22 H 0.055 0.945 23 C -0.015 4.015 24 N -0.936 5.936 25 Si 0.964 3.036 26 H -0.258 1.258 27 H -0.278 1.278 28 H -0.229 1.229 29 C 0.110 3.890 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.088 0.912 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.080 0.920 45 H 0.099 0.901 46 H 0.350 0.650 47 H 0.081 0.919 48 H 0.118 0.882 49 H 0.390 0.610 50 H 0.278 0.722 51 H 0.095 0.905 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.936 7.697 -11.736 31.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C -0.019 4.019 4 C -0.150 4.150 5 C -0.130 4.130 6 C -0.123 4.123 7 H 0.128 0.872 8 C -0.196 4.196 9 C 0.320 3.680 10 O -0.464 6.464 11 N -0.350 5.350 12 C -0.014 4.014 13 C -0.195 4.195 14 C -0.029 4.029 15 H 0.126 0.874 16 N -0.302 5.302 17 C -0.068 4.068 18 C 0.236 3.764 19 O -0.498 6.498 20 N -0.233 5.233 21 C -0.458 4.458 22 H 0.073 0.927 23 C -0.214 4.214 24 N -0.576 5.576 25 Si 0.784 3.216 26 H -0.183 1.183 27 H -0.203 1.203 28 H -0.152 1.152 29 C -0.013 4.013 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.113 0.887 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.107 0.893 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.099 0.901 45 H 0.118 0.882 46 H 0.170 0.830 47 H 0.099 0.901 48 H 0.136 0.864 49 H 0.226 0.774 50 H 0.088 0.912 51 H 0.113 0.887 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -28.114 6.884 -12.185 31.405 hybrid contribution 0.692 1.443 0.563 1.697 sum -27.422 8.327 -11.623 30.926 Atomic orbital electron populations 1.22911 0.79692 1.03744 1.00760 1.87828 1.21337 1.28997 1.95600 1.22614 0.94302 0.84240 1.00758 1.21495 0.92842 0.96744 1.03944 1.21252 0.92144 0.96687 1.02875 1.21325 0.96511 0.92250 1.02225 0.87239 1.21748 1.01544 1.01781 0.94527 1.20863 0.79159 0.91807 0.76134 1.90669 1.62045 1.43168 1.50514 1.48589 1.19666 1.11811 1.54974 1.21876 0.92360 0.86791 1.00417 1.23427 0.96582 0.99947 0.99495 1.22786 0.91568 0.90305 0.98250 0.87369 1.59888 1.09254 1.57673 1.03361 1.21667 0.94257 0.97356 0.93569 1.21021 0.86891 0.86392 0.82060 1.90555 1.70210 1.40157 1.48920 1.42032 1.26329 1.37048 1.17914 1.19006 1.04552 1.18506 1.03689 0.92663 1.26109 0.95597 1.00129 0.99543 1.69804 1.19860 1.41902 1.26057 0.85373 0.79000 0.78838 0.78347 1.18255 1.20328 1.15176 1.22338 0.94482 0.89701 0.94825 0.93330 0.93269 0.88651 0.92833 0.92792 0.90359 0.90693 0.91885 0.91598 0.92605 0.92257 0.89332 0.92038 0.91481 0.90126 0.88245 0.82981 0.90107 0.86445 0.77444 0.91227 0.88666 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 11.01 113.37 1.25 1.51 16 2 O -0.42 -6.98 10.70 -148.98 -1.59 -8.57 16 3 C 0.06 0.77 5.94 71.98 0.43 1.20 16 4 C -0.11 -1.43 5.34 30.60 0.16 -1.27 16 5 C -0.09 -1.33 4.19 30.60 0.13 -1.20 16 6 C -0.10 -1.54 2.36 -11.54 -0.03 -1.56 16 7 H 0.11 1.33 6.50 -2.39 -0.02 1.31 16 8 C -0.14 -1.86 8.77 71.99 0.63 -1.23 16 9 C 0.53 11.25 6.89 87.66 0.60 11.86 16 10 O -0.58 -16.78 16.61 -3.05 -0.05 -16.83 16 11 N -0.62 -11.37 3.33 -811.78 -2.70 -14.07 16 12 C 0.11 1.86 6.86 86.73 0.60 2.45 16 13 C -0.15 -2.21 6.57 31.87 0.21 -2.00 16 14 C 0.08 1.34 3.38 46.39 0.16 1.50 16 15 H 0.11 1.53 7.83 -2.39 -0.02 1.51 16 16 N -0.67 -16.01 6.04 -487.96 -2.95 -18.95 16 17 C 0.06 1.64 6.03 85.56 0.52 2.16 16 18 C 0.45 18.74 7.82 87.66 0.69 19.43 16 19 O -0.61 -32.21 15.78 -3.06 -0.05 -32.25 16 20 N -0.59 -26.41 5.09 -306.98 -1.56 -27.98 16 21 C -0.33 -18.70 10.16 84.04 0.85 -17.84 16 22 H 0.06 3.77 7.39 -2.91 -0.02 3.75 16 23 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 24 N -0.94 -55.58 13.96 21.66 0.30 -55.28 16 25 Si 0.96 37.51 27.74 68.60 1.90 39.42 16 26 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 27 H -0.28 -10.86 7.11 99.48 0.71 -10.16 16 28 H -0.23 -7.30 6.52 99.48 0.65 -6.65 16 29 C 0.11 1.76 6.29 86.86 0.55 2.31 16 30 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.08 0.96 6.71 -2.39 -0.02 0.95 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 37 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 1.10 8.02 -2.39 -0.02 1.08 16 39 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.09 0.92 6.89 -2.39 -0.02 0.90 16 42 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.08 1.21 7.76 -2.39 -0.02 1.19 16 45 H 0.10 1.15 8.14 -2.39 -0.02 1.14 16 46 H 0.35 9.14 7.90 -89.69 -0.71 8.44 16 47 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.12 2.47 8.08 -2.39 -0.02 2.45 16 49 H 0.39 14.20 5.76 -92.71 -0.53 13.66 16 50 H 0.28 15.13 8.31 -92.71 -0.77 14.36 16 51 H 0.10 1.33 6.87 -2.39 -0.02 1.31 16 52 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -79.81 419.10 0.12 -79.69 By element: Atomic # 1 Polarization: 38.27 SS G_CDS: -0.38 Total: 37.89 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 7.21 Total: 16.94 kcal Atomic # 7 Polarization: -109.37 SS G_CDS: -6.91 Total: -116.27 kcal Atomic # 8 Polarization: -55.97 SS G_CDS: -1.69 Total: -57.66 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 1.90 Total: 39.42 kcal Total: -79.81 0.12 -79.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490849467.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.631 kcal (2) G-P(sol) polarization free energy of solvation -79.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds