Wall clock time and date at job start Wed Apr 1 2020 01:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99821 * 2 1 4 4 C 1.53000 * 109.46787 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47211 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47211 * 180.02562 * 5 4 3 7 7 H 1.08995 * 109.47294 * 54.99723 * 6 5 4 8 8 C 1.53005 * 109.47117 * 295.00238 * 6 5 4 9 9 C 1.50696 * 109.47041 * 175.00142 * 6 5 4 10 10 O 1.21275 * 120.00142 * 26.17668 * 9 6 5 11 11 N 1.34780 * 119.99823 * 206.17394 * 9 6 5 12 12 C 1.47024 * 125.64988 * 354.88193 * 11 9 6 13 13 C 1.54318 * 107.40345 * 178.82322 * 12 11 9 14 14 C 1.55402 * 102.82900 * 337.97512 * 13 12 11 15 15 H 1.09009 * 110.89262 * 277.26911 * 14 13 12 16 16 N 1.46894 * 111.07468 * 153.48696 * 14 13 12 17 17 C 1.46902 * 111.00060 * 92.66266 * 16 14 13 18 18 C 1.50703 * 109.47078 * 180.02562 * 17 16 14 19 19 O 1.21287 * 120.00301 * 359.97438 * 18 17 16 20 20 N 1.34783 * 119.99857 * 179.97438 * 18 17 16 21 21 C 1.37093 * 119.99874 * 180.02562 * 20 18 17 22 22 H 1.08004 * 119.99941 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00008 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99856 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00190 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46867 * 0.02562 * 25 23 21 27 27 H 1.48494 * 109.46996 * 119.99947 * 25 23 21 28 28 H 1.48497 * 109.47356 * 240.00235 * 25 23 21 29 29 C 1.47422 * 125.64645 * 174.83093 * 11 9 6 30 30 H 1.08999 * 109.47129 * 59.99794 * 1 2 3 31 31 H 1.08995 * 109.47390 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47127 * 300.00316 * 1 2 3 33 33 H 1.08999 * 109.47203 * 59.99974 * 3 2 1 34 34 H 1.09000 * 109.47033 * 299.99417 * 3 2 1 35 35 H 1.09007 * 109.47101 * 59.99678 * 4 3 2 36 36 H 1.09003 * 109.47240 * 300.00123 * 4 3 2 37 37 H 1.08999 * 109.46892 * 59.99864 * 5 4 3 38 38 H 1.09000 * 109.46921 * 299.99567 * 5 4 3 39 39 H 1.09005 * 109.46478 * 306.01467 * 8 6 5 40 40 H 1.08996 * 109.47364 * 66.01352 * 8 6 5 41 41 H 1.08995 * 109.47379 * 186.01926 * 8 6 5 42 42 H 1.09002 * 109.87709 * 298.32038 * 12 11 9 43 43 H 1.09003 * 109.88308 * 59.32525 * 12 11 9 44 44 H 1.09002 * 110.72111 * 96.23915 * 13 12 11 45 45 H 1.08998 * 110.72202 * 219.52342 * 13 12 11 46 46 H 1.00899 * 111.00342 * 328.70837 * 16 14 13 47 47 H 1.09002 * 109.46936 * 299.99822 * 17 16 14 48 48 H 1.09002 * 109.47155 * 59.99995 * 17 16 14 49 49 H 0.96993 * 119.99839 * 359.97438 * 20 18 17 50 50 H 0.97000 * 120.00097 * 180.02562 * 24 23 21 51 51 H 1.09003 * 110.36930 * 323.00833 * 29 11 9 52 52 H 1.09001 * 110.36619 * 85.21881 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1578 2.5823 -0.0013 6 6 5.6830 2.4615 -0.0026 7 1 5.9980 1.8451 -0.8445 8 6 6.1444 1.8135 1.3044 9 6 6.2955 3.8327 -0.1270 10 8 5.6843 4.8070 0.2578 11 7 7.5224 3.9764 -0.6659 12 6 8.4132 2.8799 -1.0731 13 6 9.6903 3.5167 -1.6606 14 6 9.2112 4.9377 -2.0682 15 1 8.7244 4.9190 -3.0434 16 7 10.3260 5.8942 -2.0577 17 6 10.9462 5.9945 -3.3855 18 6 12.0834 6.9821 -3.3355 19 8 12.3506 7.5472 -2.2961 20 7 12.8036 7.2374 -4.4458 21 6 13.8385 8.1354 -4.4002 22 1 14.0763 8.6386 -3.4746 23 6 14.5806 8.3990 -5.5449 24 7 14.2901 7.7879 -6.6714 25 14 15.9902 9.6232 -5.4829 26 1 16.1106 10.1702 -4.1076 27 1 17.2551 8.9408 -5.8563 28 1 15.7258 10.7313 -6.4354 29 6 8.1932 5.2591 -0.9456 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6886 1.8464 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.8567 0.6438 -0.8909 36 1 3.8574 0.6435 0.8891 37 1 3.8366 3.1235 0.8887 38 1 3.8359 3.1230 -0.8913 39 1 5.7392 2.3709 2.1490 40 1 5.7893 0.7838 1.3447 41 1 7.2333 1.8244 1.3508 42 1 8.6682 2.2686 -0.2075 43 1 7.9237 2.2659 -1.8291 44 1 10.4740 3.5764 -0.9053 45 1 10.0340 2.9585 -2.5314 46 1 11.0088 5.6461 -1.3575 47 1 11.3268 5.0175 -3.6834 48 1 10.2036 6.3312 -4.1089 49 1 12.5902 6.7852 -5.2769 50 1 14.8084 7.9716 -7.4705 51 1 7.4698 5.9983 -1.2897 52 1 8.7087 5.6196 -0.0555 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490849468.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:29 Heat of formation + Delta-G solvation = -129.086627 kcal Electronic energy + Delta-G solvation = -29035.248559 eV Core-core repulsion = 24841.262773 eV Total energy + Delta-G solvation = -4193.985786 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.50432 -38.70278 -38.36339 -37.76618 -35.82853 -34.79385 -33.82089 -31.88688 -31.25922 -30.53809 -28.99113 -27.58731 -26.39896 -25.95782 -24.48999 -23.64577 -22.85992 -21.40135 -20.81889 -19.31598 -19.17788 -17.94837 -17.53563 -16.82954 -16.64683 -16.52510 -16.05010 -15.72232 -15.44567 -15.13536 -15.01515 -14.63072 -14.53086 -14.05005 -13.84669 -13.77254 -13.63487 -13.24270 -13.11189 -12.97258 -12.71694 -12.62930 -12.34107 -12.28742 -12.09503 -12.00643 -11.75937 -11.66453 -11.58792 -11.50638 -11.38083 -11.18923 -11.07644 -11.03136 -10.95530 -10.35696 -10.24581 -10.11810 -9.88787 -9.54433 -8.84786 -8.50768 -8.12976 -7.98680 -6.44155 -3.84950 2.43231 2.69179 3.15009 3.25990 3.30514 3.33314 3.87094 3.99635 4.12616 4.22476 4.33887 4.41515 4.47424 4.58038 4.66863 4.74344 4.78279 4.86027 4.89556 4.97601 5.01848 5.06659 5.10051 5.14738 5.19680 5.21401 5.23560 5.25903 5.27315 5.37703 5.46733 5.52277 5.55483 5.66685 5.69312 5.73815 5.86666 5.87369 5.88060 5.91760 5.93567 6.07641 6.23913 6.69907 7.10437 7.31866 7.53418 7.54668 7.97553 8.03890 8.58356 9.15632 9.51391 10.02529 10.73573 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.032510 B = 0.001431 C = 0.001414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.075761 B =19557.419264 C =19791.636494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.395 6.395 3 C 0.060 3.940 4 C -0.118 4.118 5 C -0.100 4.100 6 C -0.104 4.104 7 H 0.092 0.908 8 C -0.143 4.143 9 C 0.533 3.467 10 O -0.538 6.538 11 N -0.619 5.619 12 C 0.104 3.896 13 C -0.166 4.166 14 C 0.079 3.921 15 H 0.093 0.907 16 N -0.656 5.656 17 C 0.052 3.948 18 C 0.439 3.561 19 O -0.583 6.583 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 C 0.116 3.884 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.354 0.646 47 H 0.046 0.954 48 H 0.087 0.913 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.082 0.918 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.656 -19.036 10.042 30.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.017 4.017 4 C -0.156 4.156 5 C -0.138 4.138 6 C -0.125 4.125 7 H 0.110 0.890 8 C -0.201 4.201 9 C 0.321 3.679 10 O -0.415 6.415 11 N -0.354 5.354 12 C -0.020 4.020 13 C -0.206 4.206 14 C -0.033 4.033 15 H 0.111 0.889 16 N -0.288 5.288 17 C -0.080 4.080 18 C 0.225 3.775 19 O -0.467 6.467 20 N -0.199 5.199 21 C -0.429 4.429 22 H 0.122 0.878 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 C -0.007 4.007 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.103 0.897 46 H 0.175 0.825 47 H 0.064 0.936 48 H 0.105 0.895 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.100 0.900 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.058 -17.705 10.704 30.243 hybrid contribution 0.947 -0.365 -0.802 1.293 sum -21.112 -18.070 9.902 29.501 Atomic orbital electron populations 1.22740 0.80953 1.02763 1.00061 1.87859 1.19793 1.28257 1.95462 1.22563 0.94180 0.84516 1.00431 1.21561 0.92980 0.97461 1.03589 1.21340 0.92305 0.96281 1.03828 1.21250 0.96577 0.93863 1.00861 0.88970 1.21786 1.01565 1.01078 0.95650 1.20305 0.79544 0.91315 0.76702 1.90712 1.61247 1.41275 1.48263 1.48513 1.16076 1.08520 1.62312 1.21993 0.90576 0.89950 0.99438 1.23487 0.96934 0.98377 1.01799 1.22785 0.93077 0.88686 0.98791 0.88920 1.59891 1.12799 1.49485 1.06608 1.21706 0.96884 0.98142 0.91295 1.19785 0.85564 0.86993 0.85181 1.90533 1.71094 1.54270 1.30785 1.41860 1.29074 1.38902 1.10099 1.19762 1.07189 1.18288 0.97664 0.87837 1.25259 0.99333 0.98527 0.94758 1.69617 1.41222 1.42936 1.00506 0.85803 0.80212 0.79770 0.78593 1.19183 1.20771 1.20723 1.22162 0.94825 0.85362 0.98335 0.94037 0.89621 0.94040 0.93141 0.93208 0.90999 0.90659 0.90470 0.91299 0.91736 0.91030 0.92156 0.91275 0.91260 0.90009 0.89694 0.82530 0.93636 0.89461 0.77464 0.91910 0.89964 0.90691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.27 10.70 -35.23 -0.38 -3.65 16 3 C 0.06 0.41 5.94 37.16 0.22 0.63 16 4 C -0.12 -0.75 5.34 -26.73 -0.14 -0.90 16 5 C -0.10 -0.75 4.14 -26.73 -0.11 -0.86 16 6 C -0.10 -0.80 2.20 -91.77 -0.20 -1.00 16 7 H 0.09 0.56 7.22 -51.93 -0.38 0.18 16 8 C -0.14 -0.92 8.78 37.16 0.33 -0.59 16 9 C 0.53 6.09 6.94 -10.99 -0.08 6.01 16 10 O -0.54 -8.30 16.51 5.56 0.09 -8.20 16 11 N -0.62 -6.51 3.33 -170.52 -0.57 -7.07 16 12 C 0.10 0.79 6.30 -3.07 -0.02 0.77 16 13 C -0.17 -1.42 6.58 -24.77 -0.16 -1.59 16 14 C 0.08 0.89 3.38 -65.43 -0.22 0.67 16 15 H 0.09 1.01 7.83 -51.92 -0.41 0.61 16 16 N -0.66 -9.87 6.04 -105.58 -0.64 -10.51 16 17 C 0.05 0.86 6.03 -4.97 -0.03 0.83 16 18 C 0.44 10.09 7.82 -10.98 -0.09 10.01 16 19 O -0.58 -15.56 15.78 5.55 0.09 -15.48 16 20 N -0.56 -13.97 5.29 -10.96 -0.06 -14.03 16 21 C -0.30 -8.26 9.68 -14.94 -0.14 -8.41 16 22 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.22 13.05 55.50 0.72 -23.49 16 25 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 26 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 29 C 0.12 1.41 6.59 -2.53 -0.02 1.39 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.46 6.70 -51.93 -0.35 0.11 16 37 H 0.08 0.66 8.03 -51.93 -0.42 0.24 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.35 6.87 -51.93 -0.36 -0.01 16 41 H 0.06 0.38 7.25 -51.93 -0.38 0.00 16 42 H 0.07 0.44 7.25 -51.93 -0.38 0.06 16 43 H 0.07 0.42 7.67 -51.93 -0.40 0.02 16 44 H 0.08 0.72 7.76 -51.93 -0.40 0.32 16 45 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.35 5.46 7.90 -39.29 -0.31 5.15 16 47 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.09 1.34 8.09 -51.93 -0.42 0.92 16 49 H 0.39 9.27 7.90 -40.82 -0.32 8.94 16 50 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 51 H 0.08 1.12 8.09 -51.93 -0.42 0.70 16 52 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 421.38 15.07 6.35 6.35 Total: -1.00 -33.69 421.38 -8.15 -41.84 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -9.09 Total: 9.64 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 0.35 Total: 8.76 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: -0.54 Total: -55.10 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.20 Total: -27.33 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -33.69 -8.15 -41.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490849468.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.246 kcal (2) G-P(sol) polarization free energy of solvation -33.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds