Wall clock time and date at job start Wed Apr 1 2020 01:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99821 * 2 1 4 4 C 1.53000 * 109.46787 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47211 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47211 * 180.02562 * 5 4 3 7 7 H 1.08995 * 109.47294 * 54.99723 * 6 5 4 8 8 C 1.53005 * 109.47117 * 295.00238 * 6 5 4 9 9 C 1.50696 * 109.47041 * 175.00142 * 6 5 4 10 10 O 1.21275 * 120.00142 * 26.17668 * 9 6 5 11 11 N 1.34780 * 119.99823 * 206.17394 * 9 6 5 12 12 C 1.47024 * 125.64988 * 354.88193 * 11 9 6 13 13 C 1.54318 * 107.40345 * 178.82322 * 12 11 9 14 14 C 1.55402 * 102.82900 * 337.97512 * 13 12 11 15 15 H 1.09009 * 110.89262 * 277.26911 * 14 13 12 16 16 N 1.46894 * 111.07468 * 153.48696 * 14 13 12 17 17 C 1.46902 * 111.00060 * 92.66266 * 16 14 13 18 18 C 1.50703 * 109.47078 * 180.02562 * 17 16 14 19 19 O 1.21287 * 120.00301 * 359.97438 * 18 17 16 20 20 N 1.34783 * 119.99857 * 179.97438 * 18 17 16 21 21 C 1.37093 * 119.99874 * 180.02562 * 20 18 17 22 22 H 1.08004 * 119.99941 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00008 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99856 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00190 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46867 * 0.02562 * 25 23 21 27 27 H 1.48494 * 109.46996 * 119.99947 * 25 23 21 28 28 H 1.48497 * 109.47356 * 240.00235 * 25 23 21 29 29 C 1.47422 * 125.64645 * 174.83093 * 11 9 6 30 30 H 1.08999 * 109.47129 * 59.99794 * 1 2 3 31 31 H 1.08995 * 109.47390 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47127 * 300.00316 * 1 2 3 33 33 H 1.08999 * 109.47203 * 59.99974 * 3 2 1 34 34 H 1.09000 * 109.47033 * 299.99417 * 3 2 1 35 35 H 1.09007 * 109.47101 * 59.99678 * 4 3 2 36 36 H 1.09003 * 109.47240 * 300.00123 * 4 3 2 37 37 H 1.08999 * 109.46892 * 59.99864 * 5 4 3 38 38 H 1.09000 * 109.46921 * 299.99567 * 5 4 3 39 39 H 1.09005 * 109.46478 * 306.01467 * 8 6 5 40 40 H 1.08996 * 109.47364 * 66.01352 * 8 6 5 41 41 H 1.08995 * 109.47379 * 186.01926 * 8 6 5 42 42 H 1.09002 * 109.87709 * 298.32038 * 12 11 9 43 43 H 1.09003 * 109.88308 * 59.32525 * 12 11 9 44 44 H 1.09002 * 110.72111 * 96.23915 * 13 12 11 45 45 H 1.08998 * 110.72202 * 219.52342 * 13 12 11 46 46 H 1.00899 * 111.00342 * 328.70837 * 16 14 13 47 47 H 1.09002 * 109.46936 * 299.99822 * 17 16 14 48 48 H 1.09002 * 109.47155 * 59.99995 * 17 16 14 49 49 H 0.96993 * 119.99839 * 359.97438 * 20 18 17 50 50 H 0.97000 * 120.00097 * 180.02562 * 24 23 21 51 51 H 1.09003 * 110.36930 * 323.00833 * 29 11 9 52 52 H 1.09001 * 110.36619 * 85.21881 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1578 2.5823 -0.0013 6 6 5.6830 2.4615 -0.0026 7 1 5.9980 1.8451 -0.8445 8 6 6.1444 1.8135 1.3044 9 6 6.2955 3.8327 -0.1270 10 8 5.6843 4.8070 0.2578 11 7 7.5224 3.9764 -0.6659 12 6 8.4132 2.8799 -1.0731 13 6 9.6903 3.5167 -1.6606 14 6 9.2112 4.9377 -2.0682 15 1 8.7244 4.9190 -3.0434 16 7 10.3260 5.8942 -2.0577 17 6 10.9462 5.9945 -3.3855 18 6 12.0834 6.9821 -3.3355 19 8 12.3506 7.5472 -2.2961 20 7 12.8036 7.2374 -4.4458 21 6 13.8385 8.1354 -4.4002 22 1 14.0763 8.6386 -3.4746 23 6 14.5806 8.3990 -5.5449 24 7 14.2901 7.7879 -6.6714 25 14 15.9902 9.6232 -5.4829 26 1 16.1106 10.1702 -4.1076 27 1 17.2551 8.9408 -5.8563 28 1 15.7258 10.7313 -6.4354 29 6 8.1932 5.2591 -0.9456 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6886 1.8464 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.8567 0.6438 -0.8909 36 1 3.8574 0.6435 0.8891 37 1 3.8366 3.1235 0.8887 38 1 3.8359 3.1230 -0.8913 39 1 5.7392 2.3709 2.1490 40 1 5.7893 0.7838 1.3447 41 1 7.2333 1.8244 1.3508 42 1 8.6682 2.2686 -0.2075 43 1 7.9237 2.2659 -1.8291 44 1 10.4740 3.5764 -0.9053 45 1 10.0340 2.9585 -2.5314 46 1 11.0088 5.6461 -1.3575 47 1 11.3268 5.0175 -3.6834 48 1 10.2036 6.3312 -4.1089 49 1 12.5902 6.7852 -5.2769 50 1 14.8084 7.9716 -7.4705 51 1 7.4698 5.9983 -1.2897 52 1 8.7087 5.6196 -0.0555 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490849468.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:27 Heat of formation + Delta-G solvation = -154.225479 kcal Electronic energy + Delta-G solvation = -29036.338661 eV Core-core repulsion = 24841.262773 eV Total energy + Delta-G solvation = -4195.075888 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.35743 -40.18437 -39.14730 -38.77261 -36.50500 -36.20224 -35.55026 -33.26872 -32.52113 -31.39989 -29.93877 -28.09411 -27.82745 -26.58757 -25.83646 -24.72877 -23.50663 -22.10377 -21.65764 -21.07917 -19.94120 -19.91691 -18.37508 -17.76844 -17.50989 -17.17173 -17.12666 -16.81945 -16.47604 -16.32796 -16.00272 -15.76152 -15.70388 -15.32786 -15.15785 -14.64579 -14.38383 -14.20303 -14.07536 -13.93239 -13.89656 -13.48517 -13.47896 -13.18501 -13.07832 -12.90792 -12.75329 -12.69191 -12.65656 -12.41044 -12.35946 -12.29401 -12.11324 -12.08354 -11.78099 -11.69914 -11.58571 -11.50851 -10.78665 -10.61472 -10.35190 -10.00524 -9.70367 -9.30866 -8.46427 -5.94757 1.36937 1.42735 1.56305 1.57273 1.86983 2.06153 2.30079 2.80492 2.93022 3.21273 3.35696 3.49624 3.66587 3.74762 3.88385 3.92501 4.03455 4.17049 4.23069 4.25911 4.29682 4.37554 4.38121 4.49901 4.51291 4.51773 4.53799 4.60125 4.64189 4.66947 4.68900 4.78302 4.84916 4.86321 4.88118 4.94104 4.98663 5.04104 5.10062 5.16537 5.23507 5.35768 5.38959 5.42096 5.88922 6.09521 6.22084 6.36550 6.50228 6.60996 7.11154 7.13723 7.57304 8.12859 8.71047 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.032510 B = 0.001431 C = 0.001414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.075761 B =19557.419264 C =19791.636494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.056 3.944 4 C -0.109 4.109 5 C -0.094 4.094 6 C -0.096 4.096 7 H 0.118 0.882 8 C -0.140 4.140 9 C 0.525 3.475 10 O -0.589 6.589 11 N -0.618 5.618 12 C 0.102 3.898 13 C -0.157 4.157 14 C 0.083 3.917 15 H 0.103 0.897 16 N -0.675 5.675 17 C 0.070 3.930 18 C 0.436 3.564 19 O -0.625 6.625 20 N -0.572 5.572 21 C -0.334 4.334 22 H 0.077 0.923 23 C -0.010 4.010 24 N -0.919 5.919 25 Si 0.990 3.010 26 H -0.274 1.274 27 H -0.270 1.270 28 H -0.272 1.272 29 C 0.116 3.884 30 H 0.047 0.953 31 H 0.097 0.903 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.049 0.951 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.079 0.921 45 H 0.105 0.895 46 H 0.350 0.650 47 H 0.077 0.923 48 H 0.104 0.896 49 H 0.397 0.603 50 H 0.277 0.723 51 H 0.059 0.941 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.743 -21.548 9.208 31.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C -0.021 4.021 4 C -0.146 4.146 5 C -0.133 4.133 6 C -0.117 4.117 7 H 0.136 0.864 8 C -0.198 4.198 9 C 0.315 3.685 10 O -0.470 6.470 11 N -0.351 5.351 12 C -0.020 4.020 13 C -0.197 4.197 14 C -0.028 4.028 15 H 0.121 0.879 16 N -0.307 5.307 17 C -0.063 4.063 18 C 0.223 3.777 19 O -0.512 6.512 20 N -0.209 5.209 21 C -0.464 4.464 22 H 0.095 0.905 23 C -0.210 4.210 24 N -0.560 5.560 25 Si 0.814 3.186 26 H -0.199 1.199 27 H -0.195 1.195 28 H -0.197 1.197 29 C -0.008 4.008 30 H 0.066 0.934 31 H 0.115 0.885 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.112 0.888 41 H 0.084 0.916 42 H 0.107 0.893 43 H 0.114 0.886 44 H 0.098 0.902 45 H 0.124 0.876 46 H 0.170 0.830 47 H 0.095 0.905 48 H 0.122 0.878 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.078 0.922 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.151 -20.268 9.842 31.597 hybrid contribution 0.912 0.431 -0.499 1.125 sum -21.240 -19.837 9.343 30.527 Atomic orbital electron populations 1.22911 0.79740 1.03786 1.00696 1.87816 1.21270 1.28865 1.95593 1.22624 0.94589 0.84254 1.00614 1.21471 0.92532 0.96460 1.04182 1.21262 0.92537 0.96842 1.02624 1.21289 0.96117 0.91672 1.02581 0.86367 1.21795 1.01885 1.01869 0.94233 1.21089 0.79399 0.92285 0.75678 1.90686 1.62590 1.43214 1.50488 1.48603 1.16186 1.08675 1.61678 1.22238 0.89618 0.89148 1.00999 1.23437 0.97340 0.96292 1.02584 1.22732 0.91516 0.89705 0.98816 0.87937 1.59807 1.13353 1.51814 1.05741 1.21541 0.94713 0.97444 0.92556 1.20936 0.86038 0.86865 0.83816 1.90503 1.72450 1.55981 1.32245 1.41914 1.29119 1.38955 1.10926 1.19692 1.09278 1.20069 0.97332 0.90460 1.25986 1.01130 0.99791 0.94113 1.69667 1.41970 1.43491 1.00867 0.84906 0.77625 0.77821 0.78210 1.19909 1.19489 1.19744 1.21989 0.94583 0.86141 0.98063 0.93424 0.88483 0.93403 0.93054 0.93036 0.90251 0.90068 0.92064 0.92274 0.93178 0.88823 0.91600 0.89333 0.88574 0.90236 0.87647 0.83007 0.90495 0.87839 0.76874 0.91306 0.92225 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 11.01 113.37 1.25 1.49 16 2 O -0.42 -6.38 10.70 -148.98 -1.59 -7.97 16 3 C 0.06 0.71 5.94 71.98 0.43 1.14 16 4 C -0.11 -1.20 5.34 30.59 0.16 -1.03 16 5 C -0.09 -1.34 4.14 30.59 0.13 -1.22 16 6 C -0.10 -1.28 2.20 -11.54 -0.03 -1.30 16 7 H 0.12 0.99 7.22 -2.39 -0.02 0.97 16 8 C -0.14 -1.49 8.78 71.98 0.63 -0.86 16 9 C 0.53 11.72 6.94 87.66 0.61 12.33 16 10 O -0.59 -18.87 16.51 -3.01 -0.05 -18.91 16 11 N -0.62 -12.19 3.33 -811.79 -2.70 -14.89 16 12 C 0.10 1.19 6.30 86.73 0.55 1.74 16 13 C -0.16 -2.20 6.58 31.87 0.21 -1.99 16 14 C 0.08 1.75 3.38 46.40 0.16 1.90 16 15 H 0.10 1.98 7.83 -2.38 -0.02 1.96 16 16 N -0.68 -19.79 6.04 -487.94 -2.95 -22.74 16 17 C 0.07 2.19 6.03 85.56 0.52 2.71 16 18 C 0.44 20.14 7.82 87.66 0.69 20.83 16 19 O -0.63 -34.27 15.78 -3.05 -0.05 -34.32 16 20 N -0.57 -28.66 5.29 -306.98 -1.62 -30.28 16 21 C -0.33 -18.80 9.68 84.04 0.81 -17.99 16 22 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 23 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 24 N -0.92 -48.80 13.05 21.66 0.28 -48.52 16 25 Si 0.99 42.60 29.55 68.60 2.03 44.63 16 26 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 28 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 29 C 0.12 2.84 6.59 86.86 0.57 3.41 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.05 0.62 8.14 -2.39 -0.02 0.61 16 34 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.08 0.81 6.70 -2.39 -0.02 0.79 16 37 H 0.06 1.06 8.03 -2.39 -0.02 1.04 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 40 H 0.09 0.61 6.87 -2.39 -0.02 0.59 16 41 H 0.06 0.64 7.25 -2.39 -0.02 0.62 16 42 H 0.09 0.76 7.25 -2.39 -0.02 0.75 16 43 H 0.10 0.69 7.67 -2.39 -0.02 0.67 16 44 H 0.08 1.19 7.76 -2.39 -0.02 1.17 16 45 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.35 10.68 7.90 -89.69 -0.71 9.98 16 47 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.10 2.97 8.09 -2.39 -0.02 2.95 16 49 H 0.40 18.73 7.90 -92.71 -0.73 18.00 16 50 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 51 H 0.06 1.70 8.09 -2.39 -0.02 1.68 16 52 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -75.67 421.38 -0.03 -75.70 By element: Atomic # 1 Polarization: 36.76 SS G_CDS: -0.52 Total: 36.23 kcal Atomic # 6 Polarization: 13.92 SS G_CDS: 7.15 Total: 21.07 kcal Atomic # 7 Polarization: -109.44 SS G_CDS: -6.99 Total: -116.42 kcal Atomic # 8 Polarization: -59.51 SS G_CDS: -1.69 Total: -61.21 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -75.67 -0.03 -75.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490849468.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.528 kcal (2) G-P(sol) polarization free energy of solvation -75.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds