Wall clock time and date at job start Wed Apr 1 2020 00:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 O 1.42905 * 109.46911 * 119.99727 * 2 1 3 5 5 C 1.42893 * 114.00015 * 150.00091 * 4 2 1 6 6 C 1.50707 * 109.47063 * 180.02562 * 5 4 2 7 7 O 1.21282 * 119.99803 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00162 * 180.02562 * 6 5 4 9 9 C 1.46935 * 120.63037 * 359.97438 * 8 6 5 10 10 C 1.53194 * 108.77320 * 126.41400 * 9 8 6 11 11 C 1.53037 * 109.31552 * 54.63594 * 10 9 8 12 12 C 1.53041 * 109.53840 * 298.63644 * 11 10 9 13 13 H 1.09003 * 109.49692 * 301.37609 * 12 11 10 14 14 C 1.53003 * 109.49737 * 181.31593 * 12 11 10 15 15 N 1.46903 * 109.47090 * 174.99665 * 14 12 11 16 16 C 1.46893 * 110.99924 * 179.97438 * 15 14 12 17 17 C 1.50706 * 109.47176 * 179.97438 * 16 15 14 18 18 O 1.21295 * 119.99584 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00020 * 180.02562 * 17 16 15 20 20 C 1.37095 * 119.99737 * 180.02562 * 19 17 16 21 21 H 1.08004 * 120.00254 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99943 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00099 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00243 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47026 * 90.00208 * 24 22 20 26 26 H 1.48496 * 109.47474 * 210.00244 * 24 22 20 27 27 H 1.48504 * 109.47117 * 330.00775 * 24 22 20 28 28 C 1.46923 * 120.63241 * 180.02562 * 8 6 5 29 29 H 1.09005 * 109.47277 * 300.00897 * 1 2 3 30 30 H 1.09002 * 109.46670 * 60.00106 * 1 2 3 31 31 H 1.08994 * 109.47377 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47060 * 239.99552 * 2 1 3 33 33 H 1.09002 * 109.47150 * 299.99600 * 3 2 1 34 34 H 1.09003 * 109.47247 * 59.99668 * 3 2 1 35 35 H 1.08997 * 109.47048 * 179.97438 * 3 2 1 36 36 H 1.08997 * 109.47582 * 60.00259 * 5 4 2 37 37 H 1.09001 * 109.47186 * 299.99377 * 5 4 2 38 38 H 1.09004 * 109.58600 * 6.62961 * 9 8 6 39 39 H 1.08999 * 109.58672 * 246.19928 * 9 8 6 40 40 H 1.09002 * 109.49559 * 294.68245 * 10 9 8 41 41 H 1.08999 * 109.52175 * 174.60705 * 10 9 8 42 42 H 1.08995 * 109.46320 * 178.61113 * 11 10 9 43 43 H 1.09003 * 109.45588 * 58.65107 * 11 10 9 44 44 H 1.08993 * 109.47042 * 54.99965 * 14 12 11 45 45 H 1.09003 * 109.46902 * 294.99196 * 14 12 11 46 46 H 1.00893 * 110.99793 * 303.95597 * 15 14 12 47 47 H 1.09001 * 109.46739 * 60.00281 * 16 15 14 48 48 H 1.09000 * 109.47767 * 300.00540 * 16 15 14 49 49 H 0.96994 * 119.99756 * 0.02562 * 19 17 16 50 50 H 0.96999 * 120.00288 * 179.97438 * 23 22 20 51 51 H 1.09002 * 109.58709 * 113.80088 * 28 8 6 52 52 H 1.09002 * 109.58884 * 353.37168 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.2659 -1.3244 0.9888 6 6 3.6691 -1.9988 2.2748 7 8 2.9489 -1.9285 3.2481 8 7 4.8305 -2.6791 2.3437 9 6 5.7138 -2.7727 1.1732 10 6 7.1158 -2.3039 1.5748 11 6 7.5909 -3.1087 2.7867 12 6 6.6446 -2.8665 3.9648 13 1 6.6196 -1.8021 4.1985 14 6 7.1389 -3.6457 5.1853 15 7 6.3007 -3.3196 6.3468 16 6 6.7464 -4.0516 7.5398 17 6 5.8654 -3.6918 8.7083 18 8 4.9553 -2.9035 8.5615 19 7 6.0887 -4.2460 9.9164 20 6 5.2868 -3.9191 10.9793 21 1 4.4759 -3.2178 10.8484 22 6 5.5166 -4.4908 12.2247 23 7 6.5029 -5.3445 12.3838 24 14 4.4246 -4.0448 13.6731 25 1 3.2735 -4.9812 13.7318 26 1 5.2069 -4.1426 14.9315 27 1 3.9250 -2.6562 13.5073 28 6 5.2369 -3.3422 3.5902 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 3.1300 1.4424 0.0005 36 1 4.0199 -0.5874 0.7127 37 1 3.1808 -2.0708 0.1989 38 1 5.3308 -2.1372 0.3746 39 1 5.7583 -3.8065 0.8308 40 1 7.0859 -1.2447 1.8305 41 1 7.8035 -2.4580 0.7433 42 1 8.5982 -2.7942 3.0593 43 1 7.5968 -4.1700 2.5380 44 1 8.1731 -3.3735 5.3957 45 1 7.0785 -4.7150 4.9825 46 1 6.2884 -2.3250 6.5160 47 1 7.7781 -3.7826 7.7667 48 1 6.6832 -5.1237 7.3531 49 1 6.8166 -4.8761 10.0338 50 1 6.6636 -5.7434 13.2533 51 1 5.2427 -4.4224 3.4444 52 1 4.5394 -3.0825 4.3865 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491140185.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:40 Heat of formation + Delta-G solvation = -126.089927 kcal Electronic energy + Delta-G solvation = -29829.692855 eV Core-core repulsion = 25635.837016 eV Total energy + Delta-G solvation = -4193.855839 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.44953 -38.76172 -38.20634 -37.51109 -35.55421 -33.86318 -33.19436 -32.91393 -31.54732 -31.10306 -28.64193 -27.55785 -27.10512 -25.23016 -24.84648 -23.53146 -21.93308 -21.68813 -20.73386 -19.30340 -19.11801 -17.82733 -17.56146 -17.08093 -16.31115 -16.03973 -15.96185 -15.56203 -14.95286 -14.89671 -14.71812 -14.60233 -14.41787 -14.09877 -13.82754 -13.64491 -13.36333 -13.31558 -13.21853 -12.91268 -12.62796 -12.62059 -12.50825 -12.29441 -12.21720 -11.87025 -11.77839 -11.49728 -11.44234 -11.36746 -11.09592 -11.05549 -10.95909 -10.81150 -10.61583 -10.34421 -10.15944 -10.00083 -9.74091 -9.45026 -8.77836 -8.38998 -7.99019 -7.89604 -6.36261 -3.76632 2.49070 2.53859 3.22713 3.30728 3.37341 3.51435 3.97485 4.09727 4.25150 4.30566 4.44496 4.53173 4.55980 4.63208 4.71599 4.74380 4.79295 4.80420 4.88039 5.00686 5.08750 5.20570 5.23488 5.29944 5.31884 5.33936 5.39417 5.43163 5.47247 5.49069 5.58604 5.60696 5.67855 5.78232 5.82051 5.82932 5.87232 5.90534 6.03153 6.16991 6.23456 6.33014 6.37824 6.81574 7.25131 7.26512 7.60989 7.70793 8.10875 8.12637 8.67723 9.24090 9.60556 10.12680 10.81607 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012451 B = 0.002018 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.362507 B =13868.543850 C =15776.314002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 C -0.177 4.177 4 O -0.356 6.356 5 C 0.047 3.953 6 C 0.511 3.489 7 O -0.506 6.506 8 N -0.615 5.615 9 C 0.105 3.895 10 C -0.134 4.134 11 C -0.115 4.115 12 C -0.098 4.098 13 H 0.074 0.926 14 C 0.066 3.934 15 N -0.669 5.669 16 C 0.052 3.948 17 C 0.441 3.559 18 O -0.579 6.579 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.124 3.876 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.030 0.970 45 H 0.073 0.927 46 H 0.350 0.650 47 H 0.042 0.958 48 H 0.085 0.915 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.066 0.934 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.334 5.892 -31.060 31.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.021 3.979 3 C -0.234 4.234 4 O -0.275 6.275 5 C -0.033 4.033 6 C 0.297 3.703 7 O -0.379 6.379 8 N -0.351 5.351 9 C -0.018 4.018 10 C -0.172 4.172 11 C -0.153 4.153 12 C -0.117 4.117 13 H 0.093 0.907 14 C -0.064 4.064 15 N -0.301 5.301 16 C -0.081 4.081 17 C 0.226 3.774 18 O -0.463 6.463 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.194 1.194 28 C 0.003 3.997 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.048 0.952 45 H 0.091 0.909 46 H 0.169 0.831 47 H 0.060 0.940 48 H 0.104 0.896 49 H 0.225 0.775 50 H 0.080 0.920 51 H 0.084 0.916 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.754 5.919 -30.419 30.999 hybrid contribution 1.179 0.183 0.735 1.402 sum 1.934 6.102 -29.684 30.366 Atomic orbital electron populations 1.21856 0.93206 1.02981 1.02699 1.22172 0.95461 0.92475 0.87760 1.22319 1.01427 0.96763 1.02897 1.88106 1.34555 1.69637 1.35156 1.22267 0.88123 0.96842 0.96072 1.20214 0.81237 0.79106 0.89737 1.90805 1.51039 1.58703 1.37334 1.48114 1.20092 1.53554 1.13354 1.21763 0.90506 1.01851 0.87691 1.21907 0.95877 1.00739 0.98716 1.21552 0.98899 1.00462 0.94380 1.21514 0.94961 1.00879 0.94371 0.90728 1.21958 0.94165 1.00149 0.90153 1.60055 1.53497 1.13489 1.03104 1.21658 0.96425 0.99581 0.90423 1.19843 0.87825 0.85807 0.83941 1.90549 1.33860 1.37960 1.83933 1.41857 1.30439 1.40454 1.07499 1.19714 1.11533 1.24506 0.86923 0.87929 1.25254 0.97380 0.96421 0.98992 1.69614 1.30052 1.29629 1.25217 0.85856 0.79380 0.79161 0.79890 1.20400 1.20998 1.19427 1.21670 0.96195 0.95870 0.85984 0.91434 0.91175 0.91838 0.92192 0.91526 0.91412 0.92572 0.90619 0.90590 0.90282 0.91036 0.91399 0.90592 0.91492 0.91464 0.95157 0.90894 0.83077 0.93983 0.89633 0.77511 0.91962 0.91568 0.87108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.56 37.16 0.36 -0.74 16 2 C 0.08 0.62 3.34 -26.73 -0.09 0.53 16 3 C -0.18 -1.20 9.53 37.16 0.35 -0.85 16 4 O -0.36 -4.25 9.52 -55.14 -0.52 -4.77 16 5 C 0.05 0.44 4.57 36.01 0.16 0.60 16 6 C 0.51 6.82 7.78 -10.99 -0.09 6.73 16 7 O -0.51 -9.65 15.91 -14.35 -0.23 -9.88 16 8 N -0.61 -6.60 2.97 -172.73 -0.51 -7.12 16 9 C 0.11 0.66 6.34 -3.70 -0.02 0.64 16 10 C -0.13 -0.79 6.08 -26.61 -0.16 -0.95 16 11 C -0.11 -0.84 5.17 -26.69 -0.14 -0.98 16 12 C -0.10 -1.03 2.48 -90.47 -0.22 -1.25 16 13 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 14 C 0.07 0.79 5.08 -3.82 -0.02 0.77 16 15 N -0.67 -11.11 5.70 -115.06 -0.66 -11.76 16 16 C 0.05 0.94 6.17 -4.98 -0.03 0.91 16 17 C 0.44 10.80 7.82 -10.98 -0.09 10.72 16 18 O -0.58 -16.51 15.78 5.54 0.09 -16.42 16 19 N -0.57 -14.78 5.29 -10.96 -0.06 -14.84 16 20 C -0.30 -8.55 9.68 -14.93 -0.14 -8.70 16 21 H 0.10 3.11 7.16 -52.48 -0.38 2.74 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -25.10 13.05 55.50 0.72 -24.38 16 24 Si 0.93 21.70 29.55 -169.99 -5.02 16.67 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 28 C 0.12 1.55 5.54 -3.69 -0.02 1.53 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.35 7.79 -51.93 -0.40 -0.06 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.36 7.87 -51.93 -0.41 -0.05 16 36 H 0.08 0.52 7.42 -51.93 -0.39 0.14 16 37 H 0.08 0.50 7.89 -51.93 -0.41 0.09 16 38 H 0.08 0.33 5.93 -51.93 -0.31 0.02 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.35 6.16 8.43 -39.30 -0.33 5.83 16 47 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 49 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 50 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 51 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 52 H 0.11 1.88 6.79 -51.93 -0.35 1.52 16 LS Contribution 419.48 15.07 6.32 6.32 Total: -1.00 -36.51 419.48 -9.31 -45.82 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -9.20 Total: 10.91 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: -0.25 Total: 9.44 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: -0.50 Total: -58.10 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -0.67 Total: -31.07 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -36.51 -9.31 -45.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491140185.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.268 kcal (2) G-P(sol) polarization free energy of solvation -36.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds