Wall clock time and date at job start Wed Apr 1 2020 00:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 O 1.42905 * 109.46911 * 119.99727 * 2 1 3 5 5 C 1.42893 * 114.00015 * 150.00091 * 4 2 1 6 6 C 1.50707 * 109.47063 * 180.02562 * 5 4 2 7 7 O 1.21282 * 119.99803 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00162 * 180.02562 * 6 5 4 9 9 C 1.46935 * 120.63037 * 359.97438 * 8 6 5 10 10 C 1.53194 * 108.77320 * 126.41400 * 9 8 6 11 11 C 1.53037 * 109.31552 * 54.63594 * 10 9 8 12 12 C 1.53041 * 109.53840 * 298.63644 * 11 10 9 13 13 H 1.09003 * 109.49692 * 301.37609 * 12 11 10 14 14 C 1.53003 * 109.49737 * 181.31593 * 12 11 10 15 15 N 1.46903 * 109.47090 * 174.99665 * 14 12 11 16 16 C 1.46893 * 110.99924 * 179.97438 * 15 14 12 17 17 C 1.50706 * 109.47176 * 179.97438 * 16 15 14 18 18 O 1.21295 * 119.99584 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00020 * 180.02562 * 17 16 15 20 20 C 1.37095 * 119.99737 * 180.02562 * 19 17 16 21 21 H 1.08004 * 120.00254 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99943 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00099 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00243 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47026 * 90.00208 * 24 22 20 26 26 H 1.48496 * 109.47474 * 210.00244 * 24 22 20 27 27 H 1.48504 * 109.47117 * 330.00775 * 24 22 20 28 28 C 1.46923 * 120.63241 * 180.02562 * 8 6 5 29 29 H 1.09005 * 109.47277 * 300.00897 * 1 2 3 30 30 H 1.09002 * 109.46670 * 60.00106 * 1 2 3 31 31 H 1.08994 * 109.47377 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47060 * 239.99552 * 2 1 3 33 33 H 1.09002 * 109.47150 * 299.99600 * 3 2 1 34 34 H 1.09003 * 109.47247 * 59.99668 * 3 2 1 35 35 H 1.08997 * 109.47048 * 179.97438 * 3 2 1 36 36 H 1.08997 * 109.47582 * 60.00259 * 5 4 2 37 37 H 1.09001 * 109.47186 * 299.99377 * 5 4 2 38 38 H 1.09004 * 109.58600 * 6.62961 * 9 8 6 39 39 H 1.08999 * 109.58672 * 246.19928 * 9 8 6 40 40 H 1.09002 * 109.49559 * 294.68245 * 10 9 8 41 41 H 1.08999 * 109.52175 * 174.60705 * 10 9 8 42 42 H 1.08995 * 109.46320 * 178.61113 * 11 10 9 43 43 H 1.09003 * 109.45588 * 58.65107 * 11 10 9 44 44 H 1.08993 * 109.47042 * 54.99965 * 14 12 11 45 45 H 1.09003 * 109.46902 * 294.99196 * 14 12 11 46 46 H 1.00893 * 110.99793 * 303.95597 * 15 14 12 47 47 H 1.09001 * 109.46739 * 60.00281 * 16 15 14 48 48 H 1.09000 * 109.47767 * 300.00540 * 16 15 14 49 49 H 0.96994 * 119.99756 * 0.02562 * 19 17 16 50 50 H 0.96999 * 120.00288 * 179.97438 * 23 22 20 51 51 H 1.09002 * 109.58709 * 113.80088 * 28 8 6 52 52 H 1.09002 * 109.58884 * 353.37168 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.2659 -1.3244 0.9888 6 6 3.6691 -1.9988 2.2748 7 8 2.9489 -1.9285 3.2481 8 7 4.8305 -2.6791 2.3437 9 6 5.7138 -2.7727 1.1732 10 6 7.1158 -2.3039 1.5748 11 6 7.5909 -3.1087 2.7867 12 6 6.6446 -2.8665 3.9648 13 1 6.6196 -1.8021 4.1985 14 6 7.1389 -3.6457 5.1853 15 7 6.3007 -3.3196 6.3468 16 6 6.7464 -4.0516 7.5398 17 6 5.8654 -3.6918 8.7083 18 8 4.9553 -2.9035 8.5615 19 7 6.0887 -4.2460 9.9164 20 6 5.2868 -3.9191 10.9793 21 1 4.4759 -3.2178 10.8484 22 6 5.5166 -4.4908 12.2247 23 7 6.5029 -5.3445 12.3838 24 14 4.4246 -4.0448 13.6731 25 1 3.2735 -4.9812 13.7318 26 1 5.2069 -4.1426 14.9315 27 1 3.9250 -2.6562 13.5073 28 6 5.2369 -3.3422 3.5902 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 3.1300 1.4424 0.0005 36 1 4.0199 -0.5874 0.7127 37 1 3.1808 -2.0708 0.1989 38 1 5.3308 -2.1372 0.3746 39 1 5.7583 -3.8065 0.8308 40 1 7.0859 -1.2447 1.8305 41 1 7.8035 -2.4580 0.7433 42 1 8.5982 -2.7942 3.0593 43 1 7.5968 -4.1700 2.5380 44 1 8.1731 -3.3735 5.3957 45 1 7.0785 -4.7150 4.9825 46 1 6.2884 -2.3250 6.5160 47 1 7.7781 -3.7826 7.7667 48 1 6.6832 -5.1237 7.3531 49 1 6.8166 -4.8761 10.0338 50 1 6.6636 -5.7434 13.2533 51 1 5.2427 -4.4224 3.4444 52 1 4.5394 -3.0825 4.3865 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491140185.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:40 Heat of formation + Delta-G solvation = -153.489358 kcal Electronic energy + Delta-G solvation = -29830.880983 eV Core-core repulsion = 25635.837016 eV Total energy + Delta-G solvation = -4195.043968 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.33891 -40.19328 -39.41854 -38.50551 -36.78806 -35.89470 -34.10503 -33.63513 -33.27970 -32.32108 -29.57769 -28.49123 -28.05853 -26.59170 -25.87072 -24.86848 -22.75007 -22.27096 -21.67839 -20.99730 -20.08351 -19.90819 -18.37038 -17.96516 -17.69413 -17.10222 -17.02611 -16.73440 -16.44226 -16.03320 -15.88413 -15.57753 -15.40676 -15.34270 -15.21922 -14.76301 -14.44604 -14.13969 -14.10214 -13.99898 -13.66847 -13.52938 -13.45813 -13.28445 -13.13704 -13.06991 -12.94753 -12.87360 -12.62827 -12.44594 -12.37155 -12.14057 -11.99189 -11.81535 -11.65360 -11.60357 -11.53573 -11.40544 -10.75875 -10.64894 -10.37183 -10.03720 -9.65971 -9.29203 -8.48901 -5.97676 1.35881 1.39271 1.52413 1.54340 1.73359 2.03165 2.27684 2.86382 2.91852 3.17956 3.48701 3.53416 3.77996 3.88142 3.97673 4.04233 4.05536 4.11354 4.12623 4.25738 4.26765 4.29604 4.31566 4.40519 4.49767 4.57304 4.63681 4.71083 4.73815 4.74855 4.77590 4.80838 4.90180 4.93034 4.95395 4.97868 5.11471 5.16961 5.28493 5.31578 5.32428 5.38585 5.48083 5.54592 5.88350 6.11150 6.17006 6.35855 6.43602 6.58534 7.10719 7.17043 7.53853 8.10558 8.68458 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012451 B = 0.002018 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.362507 B =13868.543850 C =15776.314002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.072 3.928 3 C -0.174 4.174 4 O -0.400 6.400 5 C 0.052 3.948 6 C 0.498 3.502 7 O -0.583 6.583 8 N -0.609 5.609 9 C 0.096 3.904 10 C -0.130 4.130 11 C -0.110 4.110 12 C -0.088 4.088 13 H 0.055 0.945 14 C 0.068 3.932 15 N -0.689 5.689 16 C 0.068 3.932 17 C 0.434 3.566 18 O -0.627 6.627 19 N -0.572 5.572 20 C -0.336 4.336 21 H 0.075 0.925 22 C -0.012 4.012 23 N -0.918 5.918 24 Si 0.993 3.007 25 H -0.271 1.271 26 H -0.267 1.267 27 H -0.275 1.275 28 C 0.125 3.875 29 H 0.046 0.954 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.044 0.956 35 H 0.062 0.938 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.058 0.942 41 H 0.109 0.891 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.050 0.950 45 H 0.085 0.915 46 H 0.339 0.661 47 H 0.069 0.931 48 H 0.106 0.894 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.074 0.926 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.559 5.271 -34.059 34.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.015 3.985 3 C -0.232 4.232 4 O -0.320 6.320 5 C -0.027 4.027 6 C 0.286 3.714 7 O -0.463 6.463 8 N -0.343 5.343 9 C -0.024 4.024 10 C -0.168 4.168 11 C -0.148 4.148 12 C -0.108 4.108 13 H 0.073 0.927 14 C -0.061 4.061 15 N -0.322 5.322 16 C -0.064 4.064 17 C 0.221 3.779 18 O -0.513 6.513 19 N -0.210 5.210 20 C -0.466 4.466 21 H 0.093 0.907 22 C -0.212 4.212 23 N -0.559 5.559 24 Si 0.816 3.184 25 H -0.197 1.197 26 H -0.191 1.191 27 H -0.200 1.200 28 C 0.002 3.998 29 H 0.065 0.935 30 H 0.115 0.885 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.109 0.891 40 H 0.077 0.923 41 H 0.127 0.873 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.068 0.932 45 H 0.103 0.897 46 H 0.157 0.843 47 H 0.087 0.913 48 H 0.124 0.876 49 H 0.232 0.768 50 H 0.088 0.912 51 H 0.093 0.907 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.060 5.259 -33.478 34.026 hybrid contribution 0.508 0.356 1.613 1.728 sum 3.567 5.615 -31.865 32.552 Atomic orbital electron populations 1.21908 0.93416 1.02598 1.02976 1.22434 0.95467 0.92993 0.87588 1.22313 1.01828 0.96151 1.02885 1.88077 1.35787 1.70421 1.37679 1.22394 0.88123 0.98050 0.94119 1.21163 0.81080 0.78705 0.90416 1.90767 1.53576 1.61733 1.40185 1.48253 1.19963 1.51982 1.14071 1.22192 0.89959 1.03901 0.86396 1.21921 0.96005 0.99846 0.99032 1.21551 0.98242 1.01723 0.93235 1.21439 0.94589 0.99296 0.95469 0.92678 1.22090 0.94333 1.01075 0.88621 1.60067 1.55608 1.12661 1.03821 1.21517 0.95878 1.00740 0.88285 1.21017 0.87664 0.84247 0.84931 1.90518 1.36137 1.39845 1.84833 1.41911 1.30429 1.40874 1.07737 1.19643 1.12381 1.25742 0.88785 0.90740 1.26035 0.98510 0.95838 1.00833 1.69664 1.30504 1.29484 1.26249 0.84934 0.77908 0.78505 0.77007 1.19660 1.19114 1.20036 1.21471 0.96126 0.96463 0.85721 0.93520 0.88506 0.92550 0.89207 0.89254 0.93673 0.91902 0.87624 0.87032 0.87404 0.89075 0.92270 0.87279 0.90350 0.90081 0.93193 0.89663 0.84279 0.91301 0.87606 0.76847 0.91214 0.90746 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.56 71.98 0.69 -1.47 16 2 C 0.07 1.04 3.34 30.59 0.10 1.14 16 3 C -0.17 -2.13 9.53 71.98 0.69 -1.45 16 4 O -0.40 -9.59 9.52 -129.94 -1.24 -10.83 16 5 C 0.05 0.90 4.57 71.24 0.33 1.22 16 6 C 0.50 13.71 7.78 87.66 0.68 14.39 16 7 O -0.58 -24.41 15.91 16.00 0.25 -24.16 16 8 N -0.61 -12.77 2.97 -818.78 -2.43 -15.20 16 9 C 0.10 0.88 6.34 86.36 0.55 1.42 16 10 C -0.13 -1.02 6.08 30.67 0.19 -0.84 16 11 C -0.11 -1.25 5.17 30.62 0.16 -1.09 16 12 C -0.09 -1.80 2.48 -10.70 -0.03 -1.83 16 13 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 14 C 0.07 1.54 5.08 86.30 0.44 1.98 16 15 N -0.69 -23.43 5.70 -517.93 -2.95 -26.39 16 16 C 0.07 2.45 6.17 85.56 0.53 2.98 16 17 C 0.43 22.04 7.82 87.66 0.69 22.72 16 18 O -0.63 -37.77 15.78 -3.08 -0.05 -37.82 16 19 N -0.57 -30.80 5.29 -306.98 -1.62 -32.42 16 20 C -0.34 -20.03 9.68 84.04 0.81 -19.21 16 21 H 0.07 4.78 7.16 -2.91 -0.02 4.76 16 22 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 23 N -0.92 -50.76 13.05 21.66 0.28 -50.48 16 24 Si 0.99 44.73 29.55 68.60 2.03 46.76 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 27 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 28 C 0.12 3.22 5.54 86.38 0.48 3.70 16 29 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 0.74 7.79 -2.39 -0.02 0.72 16 33 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.06 0.67 7.87 -2.39 -0.02 0.65 16 36 H 0.11 1.14 7.42 -2.39 -0.02 1.12 16 37 H 0.11 1.08 7.89 -2.39 -0.02 1.06 16 38 H 0.11 0.39 5.93 -2.38 -0.01 0.38 16 39 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.34 12.62 8.43 -89.70 -0.76 11.87 16 47 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 49 H 0.40 20.04 7.90 -92.71 -0.73 19.31 16 50 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 51 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 52 H 0.05 2.07 6.79 -2.39 -0.02 2.06 16 Total: -1.00 -87.73 419.48 0.46 -87.27 By element: Atomic # 1 Polarization: 40.39 SS G_CDS: -0.57 Total: 39.82 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: 6.76 Total: 23.44 kcal Atomic # 7 Polarization: -117.76 SS G_CDS: -6.72 Total: -124.48 kcal Atomic # 8 Polarization: -71.78 SS G_CDS: -1.03 Total: -72.81 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -87.73 0.46 -87.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491140185.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.216 kcal (2) G-P(sol) polarization free energy of solvation -87.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds