Wall clock time and date at job start Wed Apr 1 2020 01:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 113.99477 * 2 1 4 4 H 1.08995 * 109.47263 * 30.00703 * 3 2 1 5 5 C 1.53003 * 109.47187 * 269.99784 * 3 2 1 6 6 C 1.53003 * 109.46604 * 150.00101 * 3 2 1 7 7 C 1.52994 * 109.47371 * 295.00068 * 6 3 2 8 8 C 1.50700 * 109.47372 * 180.02562 * 7 6 3 9 9 O 1.21284 * 119.99873 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00339 * 180.02562 * 8 7 6 11 11 C 1.47290 * 125.79121 * 359.97438 * 10 8 7 12 12 C 1.54325 * 107.30599 * 178.92556 * 11 10 8 13 13 C 1.55154 * 102.94303 * 337.81911 * 12 11 10 14 14 H 1.09008 * 111.03635 * 277.41090 * 13 12 11 15 15 C 1.52999 * 111.00682 * 153.57509 * 13 12 11 16 16 N 1.46907 * 109.46951 * 72.80349 * 15 13 12 17 17 C 1.46902 * 110.99738 * 180.02562 * 16 15 13 18 18 C 1.50697 * 109.46742 * 179.97438 * 17 16 15 19 19 O 1.21294 * 120.00251 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99935 * 179.97438 * 18 17 16 21 21 C 1.37098 * 120.00197 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00128 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99932 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99645 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 120.00054 * 359.97438 * 23 21 20 26 26 H 1.48509 * 109.46698 * 90.00719 * 25 23 21 27 27 H 1.48504 * 109.47189 * 210.00443 * 25 23 21 28 28 H 1.48493 * 109.47337 * 330.00756 * 25 23 21 29 29 C 1.47425 * 125.65138 * 179.97438 * 10 8 7 30 30 H 1.09001 * 109.47103 * 299.99318 * 1 2 3 31 31 H 1.08997 * 109.47560 * 59.99906 * 1 2 3 32 32 H 1.09007 * 109.46804 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.46568 * 180.02562 * 5 3 2 34 34 H 1.09002 * 109.47166 * 300.00863 * 5 3 2 35 35 H 1.09001 * 109.46395 * 60.00563 * 5 3 2 36 36 H 1.09004 * 109.47125 * 174.99409 * 6 3 2 37 37 H 1.09007 * 109.47046 * 55.00150 * 6 3 2 38 38 H 1.09001 * 109.47298 * 60.00047 * 7 6 3 39 39 H 1.09007 * 109.47102 * 300.00047 * 7 6 3 40 40 H 1.09004 * 109.85762 * 59.50172 * 11 10 8 41 41 H 1.08999 * 109.87327 * 298.36024 * 11 10 8 42 42 H 1.09002 * 110.72180 * 219.45147 * 12 11 10 43 43 H 1.08994 * 110.87038 * 96.25177 * 12 11 10 44 44 H 1.08995 * 109.47360 * 192.80199 * 15 13 12 45 45 H 1.08993 * 109.47181 * 312.80623 * 15 13 12 46 46 H 1.00906 * 110.99729 * 303.95093 * 16 15 13 47 47 H 1.08992 * 109.47296 * 299.99710 * 17 16 15 48 48 H 1.09004 * 109.46980 * 59.99985 * 17 16 15 49 49 H 0.97005 * 120.00017 * 0.02562 * 20 18 17 50 50 H 0.97002 * 119.99227 * 179.97438 * 24 23 21 51 51 H 1.09002 * 110.36696 * 85.25946 * 29 10 8 52 52 H 1.08995 * 110.36608 * 323.04783 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2176 1.7714 -1.4425 6 6 3.3589 1.2633 0.7213 7 6 3.1383 0.9184 2.1954 8 6 4.4667 0.8774 2.9060 9 8 5.4892 1.1015 2.2934 10 7 4.5185 0.5907 4.2218 11 6 3.3621 0.2987 5.0861 12 6 3.9078 0.0050 6.4994 13 6 5.3782 -0.4074 6.2255 14 1 5.4432 -1.4570 5.9383 15 6 6.2642 -0.1180 7.4388 16 7 5.9716 -1.0892 8.5015 17 6 6.8052 -0.8411 9.6854 18 6 6.4773 -1.8541 10.7518 19 8 5.6326 -2.6998 10.5457 20 7 7.1233 -1.8210 11.9342 21 6 6.8253 -2.7429 12.9042 22 1 6.0726 -3.4954 12.7211 23 6 7.4910 -2.7084 14.1234 24 7 7.2050 -3.5918 15.0533 25 14 8.7924 -1.4064 14.4405 26 1 8.1553 -0.2047 15.0366 27 1 9.8113 -1.9430 15.3781 28 1 9.4451 -1.0365 13.1590 29 6 5.7444 0.5169 5.0375 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0278 -0.0005 33 1 2.6613 2.7670 -1.4424 34 1 2.8828 1.0775 -1.9564 35 1 1.2567 1.8015 -1.9563 36 1 3.8427 2.2370 0.6443 37 1 3.9931 0.5052 0.2617 38 1 2.6546 -0.0554 2.2723 39 1 2.5041 1.6765 2.6550 40 1 2.8270 -0.5720 4.7069 41 1 2.6960 1.1609 5.1176 42 1 3.3575 -0.8138 6.9629 43 1 3.8676 0.8972 7.1243 44 1 7.3123 -0.1991 7.1510 45 1 6.0642 0.8898 7.8026 46 1 4.9915 -1.0786 8.7411 47 1 7.8572 -0.9270 9.4135 48 1 6.6086 0.1618 10.0646 49 1 7.7991 -1.1449 12.0989 50 1 7.6700 -3.5679 15.9043 51 1 6.0199 1.5078 5.3987 52 1 6.5601 0.0848 4.4581 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491798844.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:55 Heat of formation + Delta-G solvation = -150.483309 kcal Electronic energy + Delta-G solvation = -28922.720945 eV Core-core repulsion = 24727.807329 eV Total energy + Delta-G solvation = -4194.913616 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.19174 -40.29049 -39.44241 -38.77725 -36.63368 -35.84146 -34.72355 -33.74903 -33.00595 -31.15964 -30.45859 -28.80152 -27.55604 -26.71085 -25.47561 -24.09483 -23.79736 -21.98321 -21.42968 -21.15961 -20.22524 -20.09586 -18.17811 -18.04530 -17.81873 -17.31940 -16.88491 -16.65657 -16.47327 -16.19103 -15.90253 -15.74954 -15.54385 -15.11581 -15.02897 -14.70774 -14.43722 -14.36624 -14.25311 -13.98609 -13.85164 -13.57221 -13.43456 -13.38598 -13.29602 -13.13679 -12.98244 -12.70092 -12.47376 -12.40540 -12.24385 -12.08459 -12.06661 -11.95728 -11.66615 -11.61184 -11.53396 -11.49782 -10.95164 -10.52034 -10.42425 -10.23749 -9.68379 -9.30200 -8.40363 -6.01243 1.31709 1.36423 1.45721 1.59382 1.95220 1.97307 2.24077 2.73322 2.89284 3.16504 3.32257 3.48080 3.61514 3.78756 3.80725 3.97427 4.09944 4.17987 4.19900 4.29753 4.34361 4.36972 4.41953 4.46141 4.49506 4.53659 4.56199 4.58872 4.63267 4.68648 4.75615 4.79514 4.80324 4.90926 4.92666 4.97534 4.98871 5.04697 5.16521 5.19576 5.27028 5.32625 5.37923 5.53758 5.91706 6.06159 6.33710 6.43479 6.49573 6.61024 6.89306 7.11496 7.41194 7.97773 8.77284 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.032420 B = 0.001443 C = 0.001398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.461475 B =19395.534023 C =20021.797510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.409 6.409 3 C 0.086 3.914 4 H 0.081 0.919 5 C -0.174 4.174 6 C -0.099 4.099 7 C -0.124 4.124 8 C 0.521 3.479 9 O -0.590 6.590 10 N -0.622 5.622 11 C 0.101 3.899 12 C -0.129 4.129 13 C -0.092 4.092 14 H 0.079 0.921 15 C 0.075 3.925 16 N -0.687 5.687 17 C 0.062 3.938 18 C 0.448 3.552 19 O -0.614 6.614 20 N -0.591 5.591 21 C -0.330 4.330 22 H 0.055 0.945 23 C -0.014 4.014 24 N -0.935 5.935 25 Si 0.965 3.035 26 H -0.256 1.256 27 H -0.277 1.277 28 H -0.231 1.231 29 C 0.112 3.888 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.053 0.947 38 H 0.105 0.895 39 H 0.117 0.883 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.052 0.948 46 H 0.347 0.653 47 H 0.111 0.889 48 H 0.080 0.920 49 H 0.390 0.610 50 H 0.279 0.721 51 H 0.077 0.923 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.638 18.800 -28.518 35.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.328 6.328 3 C 0.028 3.972 4 H 0.099 0.901 5 C -0.232 4.232 6 C -0.137 4.137 7 C -0.163 4.163 8 C 0.312 3.688 9 O -0.470 6.470 10 N -0.355 5.355 11 C -0.021 4.021 12 C -0.166 4.166 13 C -0.111 4.111 14 H 0.097 0.903 15 C -0.054 4.054 16 N -0.320 5.320 17 C -0.070 4.070 18 C 0.236 3.764 19 O -0.499 6.499 20 N -0.233 5.233 21 C -0.459 4.459 22 H 0.073 0.927 23 C -0.213 4.213 24 N -0.575 5.575 25 Si 0.785 3.215 26 H -0.180 1.180 27 H -0.202 1.202 28 H -0.155 1.155 29 C -0.011 4.011 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.123 0.877 39 H 0.135 0.865 40 H 0.098 0.902 41 H 0.111 0.889 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.098 0.902 45 H 0.070 0.930 46 H 0.166 0.834 47 H 0.129 0.871 48 H 0.098 0.902 49 H 0.225 0.775 50 H 0.088 0.912 51 H 0.095 0.905 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.134 17.639 -29.118 35.521 hybrid contribution 0.221 0.796 1.076 1.356 sum -9.913 18.435 -28.043 34.993 Atomic orbital electron populations 1.22942 0.79883 1.03484 1.00872 1.87925 1.21062 1.28618 1.95234 1.22213 0.94217 0.84711 0.96037 0.90072 1.22269 1.02552 1.02011 0.96365 1.21425 0.96236 1.02771 0.93252 1.21614 0.93341 1.05737 0.95647 1.21020 0.92273 0.75242 0.80302 1.90685 1.38317 1.51896 1.66149 1.48719 1.09611 1.68996 1.08192 1.22280 0.88001 1.02235 0.89561 1.22764 0.94940 1.03018 0.95920 1.22235 0.95581 0.99695 0.93611 0.90275 1.21881 1.00176 0.93326 0.89990 1.60017 1.10502 1.52864 1.08615 1.21626 1.00392 0.95892 0.89139 1.21023 0.83691 0.88055 0.83639 1.90543 1.36948 1.41622 1.80755 1.42041 1.37526 1.30140 1.13606 1.19019 1.21988 1.10596 0.94295 0.92666 1.26107 1.00599 1.00220 0.94352 1.69809 1.43763 1.37272 1.06691 0.85368 0.77862 0.78109 0.80197 1.18031 1.20179 1.15472 1.22156 0.87755 0.99920 0.91274 0.92694 0.93425 0.89258 0.90504 0.92952 0.91649 0.90025 0.92769 0.87714 0.86498 0.90218 0.88898 0.89365 0.89360 0.90219 0.92979 0.83402 0.87055 0.90198 0.77452 0.91175 0.90472 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.82 113.37 1.23 1.42 16 2 O -0.41 -5.81 9.88 -148.98 -1.47 -7.28 16 3 C 0.09 0.95 2.72 30.60 0.08 1.03 16 4 H 0.08 0.57 7.79 -2.39 -0.02 0.55 16 5 C -0.17 -1.77 9.53 71.98 0.69 -1.08 16 6 C -0.10 -1.45 4.21 30.59 0.13 -1.32 16 7 C -0.12 -1.62 4.80 29.85 0.14 -1.48 16 8 C 0.52 10.72 7.85 87.66 0.69 11.41 16 9 O -0.59 -17.22 16.24 -3.04 -0.05 -17.27 16 10 N -0.62 -10.83 3.34 -811.11 -2.71 -13.53 16 11 C 0.10 1.15 6.51 86.68 0.56 1.71 16 12 C -0.13 -1.68 5.90 31.78 0.19 -1.49 16 13 C -0.09 -1.57 3.25 -9.40 -0.03 -1.60 16 14 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 15 C 0.08 1.38 5.18 86.30 0.45 1.83 16 16 N -0.69 -18.49 6.13 -517.94 -3.17 -21.66 16 17 C 0.06 1.78 6.17 85.56 0.53 2.30 16 18 C 0.45 19.72 7.82 87.66 0.69 20.41 16 19 O -0.61 -33.45 15.78 -3.07 -0.05 -33.50 16 20 N -0.59 -27.42 5.09 -306.98 -1.56 -28.98 16 21 C -0.33 -19.19 10.16 84.04 0.85 -18.33 16 22 H 0.06 3.83 7.39 -2.91 -0.02 3.81 16 23 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 24 N -0.93 -56.11 13.96 21.66 0.30 -55.80 16 25 Si 0.96 38.30 27.74 68.60 1.90 40.20 16 26 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 27 H -0.28 -10.98 7.11 99.48 0.71 -10.28 16 28 H -0.23 -7.72 6.52 99.48 0.65 -7.07 16 29 C 0.11 2.02 6.37 86.85 0.55 2.57 16 30 H 0.05 0.29 8.09 -2.39 -0.02 0.27 16 31 H 0.05 0.30 7.87 -2.39 -0.02 0.28 16 32 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.06 0.54 7.87 -2.39 -0.02 0.52 16 36 H 0.08 1.20 8.10 -2.38 -0.02 1.18 16 37 H 0.05 1.07 8.10 -2.38 -0.02 1.05 16 38 H 0.10 1.31 7.82 -2.39 -0.02 1.29 16 39 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 41 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.09 0.98 7.91 -2.39 -0.02 0.96 16 44 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.05 0.77 7.97 -2.39 -0.02 0.75 16 46 H 0.35 9.72 7.93 -89.69 -0.71 9.01 16 47 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 48 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 49 H 0.39 14.85 5.76 -92.70 -0.53 14.32 16 50 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 51 H 0.08 1.25 8.04 -2.39 -0.02 1.23 16 52 H 0.06 1.34 8.03 -2.39 -0.02 1.32 16 Total: -1.00 -82.96 422.20 0.01 -82.95 By element: Atomic # 1 Polarization: 38.22 SS G_CDS: -0.40 Total: 37.82 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: 7.21 Total: 17.07 kcal Atomic # 7 Polarization: -112.85 SS G_CDS: -7.14 Total: -119.98 kcal Atomic # 8 Polarization: -56.48 SS G_CDS: -1.57 Total: -58.05 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 1.90 Total: 40.20 kcal Total: -82.96 0.01 -82.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491798844.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.533 kcal (2) G-P(sol) polarization free energy of solvation -82.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds