Wall clock time and date at job start Wed Apr 1 2020 01:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 113.99937 * 2 1 4 4 H 1.08999 * 109.47046 * 30.00155 * 3 2 1 5 5 C 1.53006 * 109.47048 * 270.00286 * 3 2 1 6 6 C 1.52999 * 109.47431 * 150.00210 * 3 2 1 7 7 C 1.52998 * 109.46838 * 295.00100 * 6 3 2 8 8 C 1.50701 * 109.46910 * 179.97438 * 7 6 3 9 9 O 1.21288 * 120.00095 * 359.97438 * 8 7 6 10 10 N 1.34781 * 120.00374 * 179.97438 * 8 7 6 11 11 C 1.47026 * 125.64203 * 0.02595 * 10 8 7 12 12 C 1.54321 * 107.26791 * 181.03648 * 11 10 8 13 13 C 1.55448 * 102.96961 * 22.19024 * 12 11 10 14 14 H 1.09004 * 111.00873 * 82.52495 * 13 12 11 15 15 C 1.53000 * 111.11787 * 206.45980 * 13 12 11 16 16 N 1.46896 * 109.47675 * 287.10604 * 15 13 12 17 17 C 1.46893 * 111.00183 * 179.97438 * 16 15 13 18 18 C 1.50701 * 109.47063 * 179.97438 * 17 16 15 19 19 O 1.21293 * 120.00040 * 0.02562 * 18 17 16 20 20 N 1.34778 * 119.99732 * 180.02562 * 18 17 16 21 21 C 1.37105 * 119.99558 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00167 * 359.97438 * 21 20 18 23 23 C 1.38956 * 119.99633 * 180.02562 * 21 20 18 24 24 N 1.31407 * 119.99678 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 120.00095 * 359.97438 * 23 21 20 26 26 H 1.48493 * 109.47382 * 89.99977 * 25 23 21 27 27 H 1.48506 * 109.46941 * 210.00097 * 25 23 21 28 28 H 1.48501 * 109.47064 * 329.99894 * 25 23 21 29 29 C 1.47419 * 125.65221 * 179.97438 * 10 8 7 30 30 H 1.08997 * 109.47669 * 59.99867 * 1 2 3 31 31 H 1.08998 * 109.47363 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.47256 * 299.99811 * 1 2 3 33 33 H 1.08996 * 109.47028 * 60.00186 * 5 3 2 34 34 H 1.09001 * 109.47143 * 180.02562 * 5 3 2 35 35 H 1.08999 * 109.47090 * 299.99842 * 5 3 2 36 36 H 1.08995 * 109.47353 * 174.99500 * 6 3 2 37 37 H 1.09007 * 109.46836 * 54.99946 * 6 3 2 38 38 H 1.09001 * 109.47570 * 60.00000 * 7 6 3 39 39 H 1.08995 * 109.47270 * 299.99210 * 7 6 3 40 40 H 1.08998 * 109.88266 * 300.45023 * 11 10 8 41 41 H 1.09000 * 109.88221 * 61.61840 * 11 10 8 42 42 H 1.08998 * 110.71927 * 140.55469 * 12 11 10 43 43 H 1.08998 * 110.72073 * 263.64892 * 12 11 10 44 44 H 1.09000 * 109.46992 * 47.10533 * 15 13 12 45 45 H 1.08997 * 109.46670 * 167.10273 * 15 13 12 46 46 H 1.00909 * 110.99782 * 56.03939 * 16 15 13 47 47 H 1.08999 * 109.47732 * 300.00124 * 17 16 15 48 48 H 1.09005 * 109.47359 * 60.00298 * 17 16 15 49 49 H 0.96997 * 120.00366 * 0.02562 * 20 18 17 50 50 H 0.97006 * 120.00085 * 180.02562 * 24 23 21 51 51 H 1.09002 * 110.36926 * 274.73432 * 29 10 8 52 52 H 1.08995 * 110.36556 * 36.94716 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 0.5139 5 6 2.2175 1.7714 -1.4426 6 6 3.3589 1.2633 0.7212 7 6 3.1383 0.9185 2.1954 8 6 4.4668 0.8764 2.9056 9 8 5.4894 1.0997 2.2929 10 7 4.5186 0.5905 4.2217 11 6 3.3619 0.3005 5.0817 12 6 3.9002 0.0600 6.5078 13 6 5.2750 0.7852 6.4887 14 1 5.1558 1.8536 6.6692 15 6 6.2398 0.1645 7.5011 16 7 5.8306 0.5397 8.8612 17 6 6.7359 -0.0403 9.8621 18 6 6.2858 0.3659 11.2418 19 8 5.3069 1.0690 11.3778 20 7 6.9711 -0.0521 12.3244 21 6 6.5613 0.3171 13.5796 22 1 5.6897 0.9431 13.7008 23 6 7.2682 -0.1134 14.6958 24 7 6.8757 0.2408 15.8989 25 14 8.7762 -1.1956 14.4862 26 1 9.9844 -0.3418 14.3586 27 1 8.9186 -2.0810 15.6700 28 1 8.6245 -2.0246 13.2635 29 6 5.7445 0.5158 5.0371 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8901 33 1 1.2567 1.8015 -1.9563 34 1 2.6613 2.7670 -1.4426 35 1 2.8828 1.0775 -1.9564 36 1 3.8426 2.2370 0.6442 37 1 3.9931 0.5052 0.2616 38 1 2.6545 -0.0553 2.2724 39 1 2.5042 1.6766 2.6549 40 1 2.6781 1.1493 5.0819 41 1 2.8484 -0.5919 4.7238 42 1 3.2389 0.5070 7.2501 43 1 4.0263 -1.0059 6.6978 44 1 6.2212 -0.9208 7.4025 45 1 7.2493 0.5293 7.3117 46 1 4.8748 0.2694 9.0387 47 1 6.7204 -1.1271 9.7798 48 1 7.7491 0.3227 9.6893 49 1 7.7542 -0.6140 12.2156 50 1 7.3693 -0.0594 16.6781 51 1 6.1913 -0.4755 4.9605 52 1 6.4571 1.2777 4.7214 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491798845.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:58 Heat of formation + Delta-G solvation = -150.482455 kcal Electronic energy + Delta-G solvation = -28911.629529 eV Core-core repulsion = 24716.715950 eV Total energy + Delta-G solvation = -4194.913579 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.19942 -40.28959 -39.44177 -38.77122 -36.63906 -35.84179 -34.72505 -33.74911 -33.00321 -31.15973 -30.46282 -28.80414 -27.55520 -26.71036 -25.47558 -24.09728 -23.79136 -21.98720 -21.43230 -21.16061 -20.22463 -20.09572 -18.20399 -18.04483 -17.77752 -17.32089 -16.88305 -16.69832 -16.54145 -16.09467 -15.85617 -15.75504 -15.59838 -15.12473 -15.03503 -14.70094 -14.44803 -14.37644 -14.16134 -14.08734 -13.81143 -13.59810 -13.41861 -13.38068 -13.30452 -13.13979 -12.98583 -12.70471 -12.47644 -12.40051 -12.24178 -12.08705 -12.06804 -11.95517 -11.67196 -11.60368 -11.53940 -11.49999 -10.95242 -10.52176 -10.42477 -10.23624 -9.68306 -9.30590 -8.40364 -6.01199 1.31228 1.36905 1.45472 1.59325 1.95187 1.97301 2.24010 2.73528 2.88715 3.16301 3.32334 3.48183 3.61382 3.78199 3.80752 3.98087 4.09389 4.16708 4.20512 4.29890 4.34654 4.36672 4.41481 4.46010 4.49395 4.54236 4.56094 4.58734 4.63259 4.69471 4.75221 4.79119 4.80170 4.91006 4.92524 4.97277 4.98379 5.05208 5.15791 5.19527 5.27224 5.32391 5.37911 5.53730 5.91652 6.05954 6.32957 6.43181 6.49511 6.61000 6.89285 7.11338 7.41226 7.97719 8.77244 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.033506 B = 0.001427 C = 0.001397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.459363 B =19614.734400 C =20031.225963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.407 6.407 3 C 0.086 3.914 4 H 0.079 0.921 5 C -0.174 4.174 6 C -0.099 4.099 7 C -0.124 4.124 8 C 0.521 3.479 9 O -0.589 6.589 10 N -0.621 5.621 11 C 0.101 3.899 12 C -0.129 4.129 13 C -0.090 4.090 14 H 0.082 0.918 15 C 0.075 3.925 16 N -0.686 5.686 17 C 0.061 3.939 18 C 0.448 3.552 19 O -0.614 6.614 20 N -0.591 5.591 21 C -0.330 4.330 22 H 0.056 0.944 23 C -0.014 4.014 24 N -0.935 5.935 25 Si 0.964 3.036 26 H -0.259 1.259 27 H -0.276 1.276 28 H -0.230 1.230 29 C 0.112 3.888 30 H 0.046 0.954 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.050 0.950 45 H 0.080 0.920 46 H 0.347 0.653 47 H 0.079 0.921 48 H 0.113 0.887 49 H 0.390 0.610 50 H 0.279 0.721 51 H 0.074 0.926 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.681 -4.106 -33.589 34.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.327 6.327 3 C 0.028 3.972 4 H 0.097 0.903 5 C -0.232 4.232 6 C -0.137 4.137 7 C -0.163 4.163 8 C 0.311 3.689 9 O -0.470 6.470 10 N -0.355 5.355 11 C -0.021 4.021 12 C -0.167 4.167 13 C -0.110 4.110 14 H 0.100 0.900 15 C -0.054 4.054 16 N -0.319 5.319 17 C -0.071 4.071 18 C 0.236 3.764 19 O -0.498 6.498 20 N -0.233 5.233 21 C -0.459 4.459 22 H 0.074 0.926 23 C -0.213 4.213 24 N -0.575 5.575 25 Si 0.784 3.216 26 H -0.183 1.183 27 H -0.201 1.201 28 H -0.153 1.153 29 C -0.011 4.011 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.126 0.874 39 H 0.131 0.869 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.104 0.896 44 H 0.068 0.932 45 H 0.099 0.901 46 H 0.166 0.834 47 H 0.096 0.904 48 H 0.131 0.869 49 H 0.225 0.775 50 H 0.088 0.912 51 H 0.092 0.908 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.368 -3.071 -33.703 34.861 hybrid contribution 0.372 -0.967 0.689 1.244 sum -7.996 -4.038 -33.014 34.208 Atomic orbital electron populations 1.22943 0.79892 1.03540 1.00821 1.87911 1.21033 1.28496 1.95230 1.22200 0.94211 0.84734 0.96018 0.90284 1.22267 1.02570 1.01992 0.96368 1.21419 0.96233 1.02754 0.93259 1.21614 0.93318 1.05794 0.95615 1.21028 0.92268 0.75140 0.80422 1.90686 1.38326 1.51857 1.66155 1.48654 1.09590 1.69038 1.08171 1.22234 0.87999 1.02318 0.89575 1.22815 0.96219 1.01738 0.95920 1.22281 0.95412 1.01114 0.92167 0.89967 1.21880 0.99133 0.98210 0.86197 1.60018 1.06472 1.64007 1.01383 1.21629 0.98852 0.99055 0.87548 1.21014 0.84886 0.83294 0.87186 1.90541 1.30178 1.41872 1.87245 1.42042 1.28269 1.47761 1.05254 1.19022 1.12950 1.31101 0.82816 0.92632 1.26101 1.02168 0.99248 0.93738 1.69804 1.42182 1.46540 0.98992 0.85372 0.77602 0.78658 0.79930 1.18315 1.20081 1.15331 1.22159 0.87651 1.01827 0.89495 0.93496 0.89070 0.92814 0.91648 0.90651 0.92800 0.90274 0.92494 0.87353 0.86867 0.89784 0.89387 0.89220 0.89639 0.93183 0.90136 0.83419 0.90363 0.86949 0.77463 0.91173 0.90794 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.82 113.37 1.23 1.41 16 2 O -0.41 -5.54 9.88 -148.98 -1.47 -7.01 16 3 C 0.09 0.96 2.72 30.60 0.08 1.04 16 4 H 0.08 0.60 7.79 -2.39 -0.02 0.58 16 5 C -0.17 -1.78 9.53 71.98 0.69 -1.09 16 6 C -0.10 -1.45 4.21 30.59 0.13 -1.32 16 7 C -0.12 -1.63 4.79 29.85 0.14 -1.48 16 8 C 0.52 10.71 7.85 87.66 0.69 11.40 16 9 O -0.59 -17.20 16.24 -3.05 -0.05 -17.25 16 10 N -0.62 -10.82 3.33 -811.76 -2.70 -13.52 16 11 C 0.10 1.15 6.49 86.73 0.56 1.71 16 12 C -0.13 -1.69 5.92 31.88 0.19 -1.50 16 13 C -0.09 -1.52 3.26 -9.29 -0.03 -1.55 16 14 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 15 C 0.07 1.37 5.19 86.30 0.45 1.82 16 16 N -0.69 -18.36 6.13 -517.96 -3.17 -21.53 16 17 C 0.06 1.77 6.17 85.56 0.53 2.29 16 18 C 0.45 19.69 7.82 87.66 0.69 20.38 16 19 O -0.61 -33.31 15.78 -3.07 -0.05 -33.36 16 20 N -0.59 -27.39 5.09 -306.97 -1.56 -28.95 16 21 C -0.33 -19.15 10.16 84.04 0.85 -18.30 16 22 H 0.06 3.85 7.39 -2.91 -0.02 3.83 16 23 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 24 N -0.93 -56.03 13.96 21.66 0.30 -55.73 16 25 Si 0.96 38.31 27.74 68.60 1.90 40.21 16 26 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 27 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 28 H -0.23 -7.60 6.52 99.48 0.65 -6.95 16 29 C 0.11 2.01 6.37 86.86 0.55 2.57 16 30 H 0.05 0.29 7.87 -2.39 -0.02 0.27 16 31 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.05 0.28 8.09 -2.38 -0.02 0.26 16 33 H 0.06 0.55 7.87 -2.39 -0.02 0.53 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.08 1.21 8.10 -2.39 -0.02 1.20 16 37 H 0.06 1.09 8.10 -2.38 -0.02 1.07 16 38 H 0.11 1.25 7.82 -2.39 -0.02 1.23 16 39 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.08 1.00 7.93 -2.39 -0.02 0.98 16 44 H 0.05 0.76 7.98 -2.39 -0.02 0.74 16 45 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.35 9.68 7.95 -89.69 -0.71 8.97 16 47 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 48 H 0.11 2.75 8.14 -2.38 -0.02 2.73 16 49 H 0.39 14.85 5.76 -92.71 -0.53 14.31 16 50 H 0.28 15.27 8.31 -92.70 -0.77 14.50 16 51 H 0.07 1.25 8.04 -2.39 -0.02 1.23 16 52 H 0.06 1.36 8.03 -2.39 -0.02 1.34 16 Total: -1.00 -82.31 422.24 0.01 -82.29 By element: Atomic # 1 Polarization: 38.17 SS G_CDS: -0.40 Total: 37.77 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: 7.21 Total: 17.07 kcal Atomic # 7 Polarization: -112.60 SS G_CDS: -7.13 Total: -119.74 kcal Atomic # 8 Polarization: -56.04 SS G_CDS: -1.57 Total: -57.61 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 1.90 Total: 40.21 kcal Total: -82.31 0.01 -82.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491798845.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.188 kcal (2) G-P(sol) polarization free energy of solvation -82.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds