Wall clock time and date at job start Wed Apr 1 2020 01:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 H 1.09001 * 109.47377 * 330.00266 * 3 2 1 5 5 C 1.53005 * 109.47197 * 90.00111 * 3 2 1 6 6 C 1.53007 * 109.47032 * 209.99942 * 3 2 1 7 7 C 1.53007 * 109.46832 * 65.00306 * 6 3 2 8 8 C 1.50699 * 109.46909 * 180.02562 * 7 6 3 9 9 O 1.21284 * 120.00030 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00031 * 179.97438 * 8 7 6 11 11 C 1.47026 * 125.64625 * 359.69085 * 10 8 7 12 12 C 1.54341 * 107.26456 * 178.85012 * 11 10 8 13 13 C 1.55158 * 103.02034 * 338.14308 * 12 11 10 14 14 H 1.09005 * 111.00024 * 277.23067 * 13 12 11 15 15 C 1.53002 * 111.03865 * 153.39572 * 13 12 11 16 16 N 1.46897 * 109.47045 * 72.78016 * 15 13 12 17 17 C 1.46900 * 111.00028 * 180.02562 * 16 15 13 18 18 C 1.50702 * 109.47174 * 180.02562 * 17 16 15 19 19 O 1.21296 * 119.99985 * 0.02562 * 18 17 16 20 20 N 1.34779 * 120.00057 * 179.97438 * 18 17 16 21 21 C 1.37097 * 120.00196 * 180.02562 * 20 18 17 22 22 H 1.07998 * 119.99614 * 359.97438 * 21 20 18 23 23 C 1.38947 * 119.99907 * 180.02562 * 21 20 18 24 24 N 1.31401 * 120.00272 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99670 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47431 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47046 * 119.99896 * 25 23 21 28 28 H 1.48506 * 109.46944 * 239.99738 * 25 23 21 29 29 C 1.47428 * 125.64985 * 180.02562 * 10 8 7 30 30 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 31 31 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 32 32 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.46766 * 299.99641 * 5 3 2 34 34 H 1.09001 * 109.46830 * 59.99820 * 5 3 2 35 35 H 1.09006 * 109.46899 * 179.97438 * 5 3 2 36 36 H 1.09001 * 109.46932 * 184.99685 * 6 3 2 37 37 H 1.08998 * 109.47012 * 305.00080 * 6 3 2 38 38 H 1.08996 * 109.46584 * 299.99837 * 7 6 3 39 39 H 1.09003 * 109.47061 * 59.99988 * 7 6 3 40 40 H 1.08994 * 109.88194 * 298.39262 * 11 10 8 41 41 H 1.08999 * 109.88347 * 59.56291 * 11 10 8 42 42 H 1.08994 * 110.85045 * 219.66898 * 12 11 10 43 43 H 1.08999 * 110.66386 * 96.52232 * 12 11 10 44 44 H 1.08997 * 109.47056 * 192.77995 * 15 13 12 45 45 H 1.08999 * 109.46790 * 312.78552 * 15 13 12 46 46 H 1.00902 * 111.00641 * 303.95889 * 16 15 13 47 47 H 1.08997 * 109.47241 * 300.00271 * 17 16 15 48 48 H 1.08999 * 109.47164 * 60.00064 * 17 16 15 49 49 H 0.97001 * 119.99976 * 0.02562 * 20 18 17 50 50 H 0.97002 * 120.00281 * 180.02562 * 24 23 21 51 51 H 1.09003 * 110.36362 * 322.92691 * 29 10 8 52 52 H 1.08995 * 110.36861 * 85.14235 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.3589 1.2633 -0.7213 7 6 3.1382 0.9185 -2.1956 8 6 4.4667 0.8764 -2.9058 9 8 5.4892 1.1006 -2.2933 10 7 4.5185 0.5896 -4.2216 11 6 3.3623 0.2928 -5.0801 12 6 3.9002 0.0565 -6.5073 13 6 5.2719 0.7814 -6.4884 14 1 5.1520 1.8493 -6.6706 15 6 6.2355 0.1600 -7.5015 16 7 5.8235 0.5325 -8.8613 17 6 6.7275 -0.0481 -9.8630 18 6 6.2745 0.3553 -11.2425 19 8 5.2951 1.0580 -11.3779 20 7 6.9582 -0.0637 -12.3258 21 6 6.5463 0.3038 -13.5808 22 1 5.6738 0.9287 -13.7013 23 6 7.2509 -0.1286 -14.6976 24 7 8.3122 -0.8894 -14.5509 25 14 6.6901 0.3727 -16.4075 26 1 5.4788 1.2251 -16.3011 27 1 7.7736 1.1332 -17.0806 28 1 6.3719 -0.8422 -17.2001 29 6 5.7444 0.5147 -5.0371 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.2568 1.8015 1.9563 34 1 2.8829 1.0775 1.9563 35 1 2.6613 2.7671 1.4425 36 1 3.8426 2.2371 -0.6444 37 1 3.9931 0.5053 -0.2618 38 1 2.6545 -0.0552 -2.2724 39 1 2.5040 1.6767 -2.6550 40 1 2.8538 -0.6018 -4.7207 41 1 2.6742 1.1381 -5.0805 42 1 3.2386 0.5023 -7.2499 43 1 4.0296 -1.0088 -6.6982 44 1 7.2450 0.5262 -7.3146 45 1 6.2181 -0.9252 -7.4010 46 1 4.8676 0.2610 -9.0368 47 1 7.7406 0.3161 -9.6927 48 1 6.7132 -1.1348 -9.7789 49 1 7.7416 -0.6252 -12.2176 50 1 8.8043 -1.1910 -15.3305 51 1 6.4559 1.2787 -4.7235 52 1 6.1927 -0.4756 -4.9581 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491798846.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:02 Heat of formation + Delta-G solvation = -155.334453 kcal Electronic energy + Delta-G solvation = -28859.064458 eV Core-core repulsion = 24663.940481 eV Total energy + Delta-G solvation = -4195.123977 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.20361 -40.15201 -39.43724 -38.77175 -36.62054 -35.79923 -34.72141 -33.32030 -32.94180 -31.15452 -30.44726 -28.69169 -27.54917 -26.75809 -25.56901 -24.15807 -23.79972 -21.98449 -21.41222 -20.95439 -20.09425 -19.88913 -18.20427 -18.07260 -17.77756 -17.29903 -16.81514 -16.63409 -16.42759 -16.13230 -15.90034 -15.82486 -15.61841 -15.20638 -15.08268 -14.70157 -14.43626 -14.21919 -14.08346 -13.85612 -13.68303 -13.45754 -13.40407 -13.35770 -13.27906 -13.13216 -12.95318 -12.69812 -12.47428 -12.39644 -12.23919 -12.11621 -12.08373 -12.04023 -11.67548 -11.61198 -11.53674 -11.50030 -10.95112 -10.51860 -10.33541 -10.00433 -9.68429 -9.31058 -8.45903 -5.94565 1.37551 1.43037 1.57088 1.59588 1.95138 2.06479 2.30124 2.89053 2.91203 3.21759 3.38549 3.54152 3.61625 3.78133 3.80904 3.98397 4.09684 4.18922 4.29869 4.33667 4.34660 4.36943 4.40802 4.49490 4.49831 4.54467 4.57121 4.59991 4.63577 4.69739 4.74805 4.79201 4.80193 4.91229 4.91796 4.97220 4.98509 5.05417 5.15565 5.19586 5.26976 5.32620 5.37464 5.42268 5.89568 6.11103 6.33317 6.44899 6.49920 6.61110 7.11491 7.13734 7.57580 8.12584 8.71704 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.034006 B = 0.001385 C = 0.001353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.184732 B =20218.878198 C =20697.196417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.407 6.407 3 C 0.086 3.914 4 H 0.080 0.920 5 C -0.174 4.174 6 C -0.099 4.099 7 C -0.124 4.124 8 C 0.520 3.480 9 O -0.590 6.590 10 N -0.621 5.621 11 C 0.101 3.899 12 C -0.129 4.129 13 C -0.089 4.089 14 H 0.083 0.917 15 C 0.074 3.926 16 N -0.681 5.681 17 C 0.064 3.936 18 C 0.438 3.562 19 O -0.623 6.623 20 N -0.574 5.574 21 C -0.334 4.334 22 H 0.079 0.921 23 C -0.012 4.012 24 N -0.921 5.921 25 Si 0.992 3.008 26 H -0.273 1.273 27 H -0.272 1.272 28 H -0.271 1.271 29 C 0.112 3.888 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.047 0.953 46 H 0.347 0.653 47 H 0.102 0.898 48 H 0.068 0.932 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.064 0.936 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.772 -0.092 28.556 31.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.327 6.327 3 C 0.029 3.971 4 H 0.098 0.902 5 C -0.232 4.232 6 C -0.137 4.137 7 C -0.163 4.163 8 C 0.311 3.689 9 O -0.471 6.471 10 N -0.354 5.354 11 C -0.020 4.020 12 C -0.167 4.167 13 C -0.108 4.108 14 H 0.102 0.898 15 C -0.055 4.055 16 N -0.314 5.314 17 C -0.068 4.068 18 C 0.225 3.775 19 O -0.509 6.509 20 N -0.211 5.211 21 C -0.463 4.463 22 H 0.097 0.903 23 C -0.212 4.212 24 N -0.562 5.562 25 Si 0.816 3.184 26 H -0.197 1.197 27 H -0.198 1.198 28 H -0.196 1.196 29 C -0.011 4.011 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.127 0.873 39 H 0.132 0.868 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.065 0.935 46 H 0.166 0.834 47 H 0.120 0.880 48 H 0.086 0.914 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.082 0.918 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.340 0.857 28.747 31.702 hybrid contribution 0.164 -0.810 -0.914 1.232 sum -13.175 0.047 27.833 30.794 Atomic orbital electron populations 1.22946 0.79881 1.03537 1.00834 1.87915 1.21050 1.28505 1.95232 1.22200 0.94194 0.84735 0.96014 0.90236 1.22268 1.02570 1.01987 0.96371 1.21424 0.96252 1.02746 0.93262 1.21616 0.93264 1.05820 0.95599 1.21042 0.92302 0.75150 0.80383 1.90686 1.38356 1.51875 1.66137 1.48655 1.09572 1.68955 1.08244 1.22234 0.87988 1.02346 0.89479 1.22767 0.96192 1.01666 0.96049 1.22218 0.95406 1.01162 0.92057 0.89821 1.21885 0.99115 0.98072 0.86463 1.60028 1.06363 1.63794 1.01218 1.21530 0.98431 0.98441 0.88397 1.20895 0.85352 0.84015 0.87218 1.90487 1.30356 1.42732 1.87323 1.41945 1.27716 1.46308 1.05131 1.19715 1.12453 1.30751 0.83407 0.90258 1.26024 0.95627 0.96228 1.03325 1.69673 1.18468 1.35343 1.32688 0.84877 0.78221 0.78236 0.77042 1.19715 1.19751 1.19590 1.22158 0.87717 1.01762 0.89504 0.92776 0.93494 0.89085 0.91629 0.92829 0.90644 0.90267 0.92539 0.87349 0.86784 0.89361 0.89609 0.89034 0.89846 0.90464 0.93514 0.83416 0.87994 0.91389 0.76986 0.91332 0.91753 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.82 113.37 1.23 1.42 16 2 O -0.41 -5.66 9.88 -148.98 -1.47 -7.14 16 3 C 0.09 0.98 2.72 30.60 0.08 1.07 16 4 H 0.08 0.62 7.79 -2.39 -0.02 0.60 16 5 C -0.17 -1.82 9.53 71.98 0.69 -1.14 16 6 C -0.10 -1.49 4.21 30.60 0.13 -1.36 16 7 C -0.12 -1.67 4.79 29.85 0.14 -1.53 16 8 C 0.52 11.05 7.85 87.66 0.69 11.74 16 9 O -0.59 -17.65 16.24 -3.04 -0.05 -17.70 16 10 N -0.62 -11.34 3.33 -811.72 -2.70 -14.04 16 11 C 0.10 1.22 6.49 86.73 0.56 1.79 16 12 C -0.13 -1.83 5.90 31.79 0.19 -1.64 16 13 C -0.09 -1.63 3.25 -9.39 -0.03 -1.66 16 14 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 15 C 0.07 1.54 5.19 86.30 0.45 1.99 16 16 N -0.68 -19.91 6.13 -517.94 -3.17 -23.08 16 17 C 0.06 2.12 6.17 85.56 0.53 2.64 16 18 C 0.44 20.43 7.82 87.66 0.69 21.11 16 19 O -0.62 -33.86 15.78 -3.08 -0.05 -33.91 16 20 N -0.57 -29.12 5.29 -306.98 -1.62 -30.74 16 21 C -0.33 -18.83 9.68 84.04 0.81 -18.01 16 22 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 23 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 24 N -0.92 -49.39 13.05 21.66 0.28 -49.10 16 25 Si 0.99 42.59 29.55 68.60 2.03 44.62 16 26 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 27 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 28 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 29 C 0.11 2.17 6.37 86.86 0.55 2.72 16 30 H 0.05 0.29 8.09 -2.39 -0.02 0.27 16 31 H 0.05 0.30 7.87 -2.39 -0.02 0.28 16 32 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.06 0.56 7.87 -2.39 -0.02 0.54 16 34 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 36 H 0.08 1.25 8.10 -2.39 -0.02 1.23 16 37 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 38 H 0.11 1.29 7.82 -2.39 -0.02 1.27 16 39 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.09 1.31 8.14 -2.39 -0.02 1.30 16 43 H 0.08 1.10 7.91 -2.39 -0.02 1.08 16 44 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.05 0.86 7.97 -2.39 -0.02 0.84 16 46 H 0.35 10.34 7.94 -89.69 -0.71 9.63 16 47 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 48 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.40 19.09 7.90 -92.71 -0.73 18.36 16 50 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 51 H 0.06 1.45 8.04 -2.39 -0.02 1.43 16 52 H 0.07 1.34 8.04 -2.39 -0.02 1.32 16 Total: -1.00 -74.20 425.30 -0.12 -74.32 By element: Atomic # 1 Polarization: 38.35 SS G_CDS: -0.54 Total: 37.82 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: 7.17 Total: 18.95 kcal Atomic # 7 Polarization: -109.76 SS G_CDS: -7.21 Total: -116.97 kcal Atomic # 8 Polarization: -57.17 SS G_CDS: -1.57 Total: -58.74 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -74.20 -0.12 -74.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491798846.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.013 kcal (2) G-P(sol) polarization free energy of solvation -74.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds