Wall clock time and date at job start Wed Apr 1 2020 00:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00122 * 2 1 4 4 C 1.50700 * 109.46985 * 180.02562 * 3 2 1 5 5 O 1.21278 * 120.00318 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99633 * 179.97438 * 4 3 2 7 7 C 1.46504 * 119.99804 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.46772 * 180.02562 * 7 6 4 9 9 C 1.50695 * 109.46921 * 180.02562 * 8 7 6 10 10 O 1.21288 * 120.00008 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00278 * 180.02562 * 9 8 7 12 12 C 1.46996 * 120.61322 * 5.14356 * 11 9 8 13 13 C 1.53190 * 108.74072 * 126.41027 * 12 11 9 14 14 C 1.53040 * 109.33808 * 54.62228 * 13 12 11 15 15 C 1.53042 * 109.54020 * 298.61918 * 14 13 12 16 16 H 1.08994 * 109.49840 * 181.32115 * 15 14 13 17 17 C 1.53005 * 109.49524 * 301.38238 * 15 14 13 18 18 C 1.46931 * 120.63416 * 185.14346 * 11 9 8 19 19 H 1.08999 * 109.58859 * 113.81935 * 18 11 9 20 20 C 1.53002 * 109.70328 * 353.46527 * 18 11 9 21 21 N 1.46490 * 109.47090 * 179.81906 * 20 18 11 22 22 C 1.36938 * 119.99999 * 174.62701 * 21 20 18 23 23 H 1.08001 * 119.99912 * 0.02562 * 22 21 20 24 24 C 1.38816 * 119.99921 * 179.97438 * 22 21 20 25 25 N 1.31613 * 120.00289 * 0.02562 * 24 22 21 26 26 Si 1.86808 * 119.99606 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46894 * 90.00460 * 26 24 22 28 28 H 1.48498 * 109.46985 * 210.00187 * 26 24 22 29 29 H 1.48492 * 109.47196 * 329.99953 * 26 24 22 30 30 H 1.08992 * 109.47453 * 60.00054 * 1 2 3 31 31 H 1.09000 * 109.47049 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46444 * 299.99784 * 1 2 3 33 33 H 1.08993 * 109.46915 * 60.00014 * 3 2 1 34 34 H 1.09001 * 109.46826 * 300.00489 * 3 2 1 35 35 H 0.97002 * 119.99962 * 0.02562 * 6 4 3 36 36 H 1.08996 * 109.46963 * 60.00307 * 7 6 4 37 37 H 1.08997 * 109.47034 * 300.00474 * 7 6 4 38 38 H 1.08996 * 109.47417 * 60.00229 * 8 7 6 39 39 H 1.09001 * 109.47001 * 300.00037 * 8 7 6 40 40 H 1.08999 * 109.63074 * 6.62148 * 12 11 9 41 41 H 1.09006 * 109.57967 * 246.17280 * 12 11 9 42 42 H 1.09003 * 109.49764 * 294.65484 * 13 12 11 43 43 H 1.09000 * 109.50236 * 174.58916 * 13 12 11 44 44 H 1.08995 * 109.46364 * 58.64370 * 14 13 12 45 45 H 1.09006 * 109.46125 * 178.60010 * 14 13 12 46 46 H 1.08997 * 109.47067 * 60.00074 * 17 15 14 47 47 H 1.09000 * 109.46821 * 179.97438 * 17 15 14 48 48 H 1.08999 * 109.47302 * 300.00176 * 17 15 14 49 49 H 1.09002 * 109.46528 * 299.81826 * 20 18 11 50 50 H 1.08993 * 109.46997 * 59.81427 * 20 18 11 51 51 H 0.97002 * 120.00452 * 354.62364 * 21 20 18 52 52 H 0.96998 * 120.00359 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 -0.0006 5 8 4.0341 0.0915 -0.0006 6 7 4.2765 2.2968 -0.0013 7 6 5.7370 2.1811 -0.0013 8 6 6.3592 3.5788 -0.0014 9 6 7.8615 3.4599 -0.0021 10 8 8.3831 2.3649 -0.0020 11 7 8.6254 4.5702 -0.0018 12 6 8.0118 5.9010 0.1126 13 6 8.6729 6.6496 1.2742 14 6 10.1888 6.6719 1.0654 15 6 10.7243 5.2383 1.0484 16 1 11.8069 5.2558 0.9232 17 6 10.3739 4.5466 2.3675 18 6 10.0871 4.4732 -0.1158 19 1 10.4097 4.9107 -1.0606 20 6 10.5127 3.0047 -0.0587 21 7 11.9700 2.9138 -0.1771 22 6 12.5937 1.7022 -0.0415 23 1 12.0111 0.8137 0.1523 24 6 13.9745 1.6159 -0.1543 25 7 14.6844 2.6986 -0.3909 26 14 14.8252 -0.0370 0.0300 27 1 14.9246 -0.6933 -1.2984 28 1 16.1875 0.1665 0.5847 29 1 14.0397 -0.8981 0.9501 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8901 33 1 1.6887 1.8463 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 3.8593 3.1725 -0.0009 36 1 6.0585 1.6398 -0.8910 37 1 6.0586 1.6406 0.8889 38 1 6.0377 4.1198 0.8885 39 1 6.0375 4.1197 -0.8915 40 1 6.9441 5.7966 0.3057 41 1 8.1653 6.4549 -0.8136 42 1 8.4421 6.1434 2.2115 43 1 8.2956 7.6716 1.3102 44 1 10.4176 7.1562 0.1162 45 1 10.6592 7.2256 1.8780 46 1 9.2912 4.5284 2.4918 47 1 10.7551 3.5255 2.3547 48 1 10.8255 5.0931 3.1954 49 1 10.1975 2.5719 0.8907 50 1 10.0467 2.4593 -0.8792 51 1 12.4932 3.7117 -0.3516 52 1 15.6494 2.6384 -0.4693 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496461443.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:11 Heat of formation + Delta-G solvation = -87.580714 kcal Electronic energy + Delta-G solvation = -30839.433449 eV Core-core repulsion = 26647.247494 eV Total energy + Delta-G solvation = -4192.185954 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.69311 -39.96255 -37.97878 -37.61506 -35.42925 -34.74060 -33.36475 -32.20164 -31.34186 -30.04306 -29.10409 -27.13613 -26.34539 -25.95126 -24.43445 -23.54628 -22.78042 -21.14089 -20.98002 -19.90925 -18.27918 -17.63109 -17.28020 -16.97754 -16.76826 -16.67354 -16.09989 -15.54999 -15.39708 -15.05609 -14.90939 -14.69668 -14.41549 -14.17012 -13.97639 -13.66009 -13.38451 -13.22926 -13.10053 -12.96695 -12.78923 -12.58538 -12.20275 -12.03640 -11.93927 -11.89228 -11.67126 -11.34485 -11.27422 -10.94837 -10.80900 -10.72908 -10.56011 -10.30459 -10.25133 -10.12660 -10.05612 -9.91359 -9.59463 -9.34803 -8.81278 -8.73567 -8.29947 -6.71200 -5.62499 -2.88241 2.35592 2.41082 2.74871 3.08055 3.54377 3.59204 3.62067 3.68448 4.31138 4.51934 4.53484 4.63642 4.68290 4.70114 4.75352 4.79606 4.86804 4.88640 4.91965 4.97221 5.11838 5.17623 5.24020 5.33041 5.36388 5.53170 5.68723 5.71052 5.74276 5.80235 5.84727 5.94789 5.99184 6.00937 6.06361 6.09570 6.27306 6.31861 6.41311 6.47097 6.52944 6.77158 6.83273 7.15962 7.17226 7.35638 7.56806 7.89003 7.95661 8.35628 8.58932 9.68285 10.27597 10.62208 11.61017 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010673 B = 0.002546 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.835795 B =10996.678299 C =13252.897138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.044 3.956 4 C 0.510 3.490 5 O -0.510 6.510 6 N -0.732 5.732 7 C 0.135 3.865 8 C -0.152 4.152 9 C 0.509 3.491 10 O -0.508 6.508 11 N -0.604 5.604 12 C 0.109 3.891 13 C -0.137 4.137 14 C -0.116 4.116 15 C -0.098 4.098 16 H 0.092 0.908 17 C -0.140 4.140 18 C 0.144 3.856 19 H 0.069 0.931 20 C 0.162 3.838 21 N -0.737 5.737 22 C -0.222 4.222 23 H 0.070 0.930 24 C -0.020 4.020 25 N -0.939 5.939 26 Si 0.904 3.096 27 H -0.292 1.292 28 H -0.293 1.293 29 H -0.283 1.283 30 H 0.044 0.956 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.398 0.602 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.045 0.955 47 H 0.071 0.929 48 H 0.045 0.955 49 H 0.043 0.957 50 H 0.040 0.960 51 H 0.378 0.622 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.790 12.285 2.282 31.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.036 4.036 4 C 0.294 3.706 5 O -0.384 6.384 6 N -0.386 5.386 7 C 0.011 3.989 8 C -0.193 4.193 9 C 0.295 3.705 10 O -0.382 6.382 11 N -0.339 5.339 12 C -0.014 4.014 13 C -0.175 4.175 14 C -0.154 4.154 15 C -0.118 4.118 16 H 0.110 0.890 17 C -0.197 4.197 18 C 0.041 3.959 19 H 0.087 0.913 20 C 0.036 3.964 21 N -0.382 5.382 22 C -0.353 4.353 23 H 0.088 0.912 24 C -0.215 4.215 25 N -0.589 5.589 26 Si 0.736 3.264 27 H -0.219 1.219 28 H -0.220 1.220 29 H -0.208 1.208 30 H 0.062 0.938 31 H 0.110 0.890 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.232 0.768 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.064 0.936 47 H 0.090 0.910 48 H 0.064 0.936 49 H 0.061 0.939 50 H 0.057 0.943 51 H 0.211 0.789 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -28.007 10.489 2.314 29.996 hybrid contribution 0.288 0.417 0.002 0.507 sum -27.719 10.906 2.317 29.877 Atomic orbital electron populations 1.22851 0.80281 1.03467 1.00083 1.88045 1.19845 1.25101 1.95402 1.22230 0.91630 0.87147 1.02575 1.20238 0.88626 0.84648 0.77085 1.90795 1.74484 1.26398 1.46705 1.45859 1.07338 1.08593 1.76856 1.21087 0.77373 0.95806 1.04611 1.21865 0.94184 0.98758 1.04465 1.20217 0.88360 0.84529 0.77409 1.90905 1.73124 1.26542 1.47674 1.48109 1.07260 1.05541 1.72966 1.21720 0.97175 0.83597 0.98941 1.21957 0.96739 0.99973 0.98813 1.21583 0.94709 0.97282 1.01796 1.21445 1.01377 0.93422 0.95517 0.89019 1.21807 1.00181 1.01963 0.95775 1.21624 0.77144 0.99628 0.97510 0.91343 1.21323 0.84895 0.89680 1.00548 1.42550 1.00811 1.07993 1.86882 1.19231 0.89728 0.86979 1.39387 0.91230 1.24686 0.96281 0.96957 1.03546 1.69651 1.05378 1.26567 1.57302 0.86207 0.78836 0.83738 0.77618 1.21916 1.21984 1.20830 0.93776 0.88997 0.93775 0.90214 0.90212 0.76793 0.90141 0.90185 0.88583 0.88526 0.90185 0.91433 0.91110 0.91223 0.92011 0.91859 0.93606 0.91028 0.93626 0.93874 0.94283 0.78904 0.93822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.37 -3.74 10.24 -55.14 -0.56 -4.30 16 3 C 0.04 0.31 6.42 36.01 0.23 0.54 16 4 C 0.51 5.57 7.91 -10.98 -0.09 5.49 16 5 O -0.51 -8.63 16.50 -14.35 -0.24 -8.87 16 6 N -0.73 -5.78 5.56 -60.29 -0.33 -6.12 16 7 C 0.13 1.46 4.96 -4.04 -0.02 1.44 16 8 C -0.15 -1.27 4.22 -27.89 -0.12 -1.39 16 9 C 0.51 7.02 7.61 -10.99 -0.08 6.94 16 10 O -0.51 -9.64 11.40 5.55 0.06 -9.57 16 11 N -0.60 -7.79 2.41 -165.16 -0.40 -8.19 16 12 C 0.11 0.92 6.33 -3.67 -0.02 0.89 16 13 C -0.14 -1.18 5.74 -26.61 -0.15 -1.34 16 14 C -0.12 -1.31 5.43 -26.69 -0.14 -1.46 16 15 C -0.10 -1.52 2.56 -90.50 -0.23 -1.75 16 16 H 0.09 1.68 7.20 -51.93 -0.37 1.30 16 17 C -0.14 -2.21 8.20 37.16 0.30 -1.91 16 18 C 0.14 2.40 2.74 -67.60 -0.18 2.22 16 19 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 20 C 0.16 3.58 3.63 -4.05 -0.01 3.57 16 21 N -0.74 -19.42 5.28 -59.91 -0.32 -19.74 16 22 C -0.22 -6.56 9.99 -15.06 -0.15 -6.71 16 23 H 0.07 2.08 7.83 -52.49 -0.41 1.66 16 24 C -0.02 -0.60 5.50 -17.43 -0.10 -0.69 16 25 N -0.94 -29.13 13.06 55.49 0.72 -28.41 16 26 Si 0.90 23.67 29.55 -169.99 -5.02 18.65 16 27 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 28 H -0.29 -7.66 7.11 56.52 0.40 -7.25 16 29 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 30 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.40 1.42 8.47 -40.82 -0.35 1.08 16 36 H 0.08 1.09 8.10 -51.93 -0.42 0.66 16 37 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 38 H 0.10 0.56 7.47 -51.93 -0.39 0.17 16 39 H 0.10 0.57 8.11 -51.93 -0.42 0.15 16 40 H 0.08 0.43 5.97 -51.93 -0.31 0.12 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.66 6.34 -51.93 -0.33 0.33 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.04 0.65 5.98 -51.93 -0.31 0.34 16 47 H 0.07 1.40 6.35 -51.93 -0.33 1.07 16 48 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 49 H 0.04 1.03 5.23 -51.93 -0.27 0.76 16 50 H 0.04 0.97 6.44 -51.93 -0.33 0.63 16 51 H 0.38 10.21 6.80 -40.82 -0.28 9.93 16 52 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 403.81 15.07 6.09 6.09 Total: -1.00 -39.21 403.81 -8.39 -47.60 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -8.73 Total: 5.74 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 0.34 Total: 7.12 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: -0.33 Total: -62.45 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.74 Total: -22.74 kcal Atomic # 14 Polarization: 23.67 SS G_CDS: -5.02 Total: 18.65 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -39.21 -8.39 -47.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496461443.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.983 kcal (2) G-P(sol) polarization free energy of solvation -39.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds