Wall clock time and date at job start Wed Apr 1 2020 00:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00122 * 2 1 4 4 C 1.50700 * 109.46985 * 180.02562 * 3 2 1 5 5 O 1.21278 * 120.00318 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99633 * 179.97438 * 4 3 2 7 7 C 1.46504 * 119.99804 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.46772 * 180.02562 * 7 6 4 9 9 C 1.50695 * 109.46921 * 180.02562 * 8 7 6 10 10 O 1.21288 * 120.00008 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00278 * 180.02562 * 9 8 7 12 12 C 1.46996 * 120.61322 * 5.14356 * 11 9 8 13 13 C 1.53190 * 108.74072 * 126.41027 * 12 11 9 14 14 C 1.53040 * 109.33808 * 54.62228 * 13 12 11 15 15 C 1.53042 * 109.54020 * 298.61918 * 14 13 12 16 16 H 1.08994 * 109.49840 * 181.32115 * 15 14 13 17 17 C 1.53005 * 109.49524 * 301.38238 * 15 14 13 18 18 C 1.46931 * 120.63416 * 185.14346 * 11 9 8 19 19 H 1.08999 * 109.58859 * 113.81935 * 18 11 9 20 20 C 1.53002 * 109.70328 * 353.46527 * 18 11 9 21 21 N 1.46490 * 109.47090 * 179.81906 * 20 18 11 22 22 C 1.36938 * 119.99999 * 174.62701 * 21 20 18 23 23 H 1.08001 * 119.99912 * 0.02562 * 22 21 20 24 24 C 1.38816 * 119.99921 * 179.97438 * 22 21 20 25 25 N 1.31613 * 120.00289 * 0.02562 * 24 22 21 26 26 Si 1.86808 * 119.99606 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46894 * 90.00460 * 26 24 22 28 28 H 1.48498 * 109.46985 * 210.00187 * 26 24 22 29 29 H 1.48492 * 109.47196 * 329.99953 * 26 24 22 30 30 H 1.08992 * 109.47453 * 60.00054 * 1 2 3 31 31 H 1.09000 * 109.47049 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46444 * 299.99784 * 1 2 3 33 33 H 1.08993 * 109.46915 * 60.00014 * 3 2 1 34 34 H 1.09001 * 109.46826 * 300.00489 * 3 2 1 35 35 H 0.97002 * 119.99962 * 0.02562 * 6 4 3 36 36 H 1.08996 * 109.46963 * 60.00307 * 7 6 4 37 37 H 1.08997 * 109.47034 * 300.00474 * 7 6 4 38 38 H 1.08996 * 109.47417 * 60.00229 * 8 7 6 39 39 H 1.09001 * 109.47001 * 300.00037 * 8 7 6 40 40 H 1.08999 * 109.63074 * 6.62148 * 12 11 9 41 41 H 1.09006 * 109.57967 * 246.17280 * 12 11 9 42 42 H 1.09003 * 109.49764 * 294.65484 * 13 12 11 43 43 H 1.09000 * 109.50236 * 174.58916 * 13 12 11 44 44 H 1.08995 * 109.46364 * 58.64370 * 14 13 12 45 45 H 1.09006 * 109.46125 * 178.60010 * 14 13 12 46 46 H 1.08997 * 109.47067 * 60.00074 * 17 15 14 47 47 H 1.09000 * 109.46821 * 179.97438 * 17 15 14 48 48 H 1.08999 * 109.47302 * 300.00176 * 17 15 14 49 49 H 1.09002 * 109.46528 * 299.81826 * 20 18 11 50 50 H 1.08993 * 109.46997 * 59.81427 * 20 18 11 51 51 H 0.97002 * 120.00452 * 354.62364 * 21 20 18 52 52 H 0.96998 * 120.00359 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 -0.0006 5 8 4.0341 0.0915 -0.0006 6 7 4.2765 2.2968 -0.0013 7 6 5.7370 2.1811 -0.0013 8 6 6.3592 3.5788 -0.0014 9 6 7.8615 3.4599 -0.0021 10 8 8.3831 2.3649 -0.0020 11 7 8.6254 4.5702 -0.0018 12 6 8.0118 5.9010 0.1126 13 6 8.6729 6.6496 1.2742 14 6 10.1888 6.6719 1.0654 15 6 10.7243 5.2383 1.0484 16 1 11.8069 5.2558 0.9232 17 6 10.3739 4.5466 2.3675 18 6 10.0871 4.4732 -0.1158 19 1 10.4097 4.9107 -1.0606 20 6 10.5127 3.0047 -0.0587 21 7 11.9700 2.9138 -0.1771 22 6 12.5937 1.7022 -0.0415 23 1 12.0111 0.8137 0.1523 24 6 13.9745 1.6159 -0.1543 25 7 14.6844 2.6986 -0.3909 26 14 14.8252 -0.0370 0.0300 27 1 14.9246 -0.6933 -1.2984 28 1 16.1875 0.1665 0.5847 29 1 14.0397 -0.8981 0.9501 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8901 33 1 1.6887 1.8463 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 3.8593 3.1725 -0.0009 36 1 6.0585 1.6398 -0.8910 37 1 6.0586 1.6406 0.8889 38 1 6.0377 4.1198 0.8885 39 1 6.0375 4.1197 -0.8915 40 1 6.9441 5.7966 0.3057 41 1 8.1653 6.4549 -0.8136 42 1 8.4421 6.1434 2.2115 43 1 8.2956 7.6716 1.3102 44 1 10.4176 7.1562 0.1162 45 1 10.6592 7.2256 1.8780 46 1 9.2912 4.5284 2.4918 47 1 10.7551 3.5255 2.3547 48 1 10.8255 5.0931 3.1954 49 1 10.1975 2.5719 0.8907 50 1 10.0467 2.4593 -0.8792 51 1 12.4932 3.7117 -0.3516 52 1 15.6494 2.6384 -0.4693 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496461443.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:10 Heat of formation + Delta-G solvation = -118.741652 kcal Electronic energy + Delta-G solvation = -30840.784688 eV Core-core repulsion = 26647.247494 eV Total energy + Delta-G solvation = -4193.537194 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.81332 -40.81313 -38.95573 -38.39636 -36.70502 -36.19929 -34.64317 -33.77094 -32.28435 -31.73248 -29.74861 -28.48829 -27.26957 -26.87526 -25.81707 -24.72143 -24.23569 -22.37787 -21.90038 -20.96181 -19.50969 -19.04658 -18.36422 -18.08530 -17.55902 -17.41136 -17.09428 -16.66391 -16.52727 -16.17497 -16.14656 -15.81167 -15.47389 -15.26691 -15.23688 -14.88211 -14.75057 -14.59910 -14.23972 -14.02953 -13.89221 -13.53585 -13.28477 -13.12916 -13.09242 -12.91603 -12.80905 -12.64856 -12.43081 -12.35325 -12.32966 -12.11380 -11.99246 -11.92323 -11.75667 -11.32634 -11.18709 -10.97955 -10.94591 -10.74119 -10.20284 -10.12944 -9.50008 -8.92671 -7.96963 -5.23429 1.41190 1.43599 1.52560 1.54821 1.65943 1.70775 2.14417 2.54833 3.14608 3.35509 3.54080 3.67080 3.81216 3.87329 3.93227 3.99743 4.07530 4.14868 4.20184 4.22950 4.27792 4.32172 4.42724 4.51103 4.51953 4.59244 4.60590 4.68355 4.75028 4.81937 4.84424 4.89814 4.93754 4.94362 4.99133 5.09654 5.17827 5.24030 5.31804 5.33503 5.39341 5.42692 5.46019 5.59977 5.75852 6.07482 6.26396 6.52240 6.58849 7.24325 7.30474 7.32554 8.08981 8.35319 9.26401 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010673 B = 0.002546 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.835795 B =10996.678299 C =13252.897138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.049 3.951 4 C 0.500 3.500 5 O -0.585 6.585 6 N -0.705 5.705 7 C 0.140 3.860 8 C -0.130 4.130 9 C 0.496 3.504 10 O -0.575 6.575 11 N -0.600 5.600 12 C 0.100 3.900 13 C -0.131 4.131 14 C -0.111 4.111 15 C -0.095 4.095 16 H 0.052 0.948 17 C -0.131 4.131 18 C 0.153 3.847 19 H 0.064 0.936 20 C 0.175 3.825 21 N -0.742 5.742 22 C -0.238 4.238 23 H 0.057 0.943 24 C -0.073 4.073 25 N -0.965 5.965 26 Si 0.970 3.030 27 H -0.286 1.286 28 H -0.287 1.287 29 H -0.278 1.278 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.426 0.574 36 H 0.043 0.957 37 H 0.045 0.955 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.126 0.874 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.108 0.892 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.021 0.979 48 H 0.058 0.942 49 H 0.023 0.977 50 H 0.010 0.990 51 H 0.372 0.628 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.309 15.933 2.644 36.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C -0.030 4.030 4 C 0.287 3.713 5 O -0.464 6.464 6 N -0.361 5.361 7 C 0.015 3.985 8 C -0.169 4.169 9 C 0.285 3.715 10 O -0.454 6.454 11 N -0.333 5.333 12 C -0.021 4.021 13 C -0.169 4.169 14 C -0.148 4.148 15 C -0.115 4.115 16 H 0.071 0.929 17 C -0.188 4.188 18 C 0.049 3.951 19 H 0.082 0.918 20 C 0.049 3.951 21 N -0.387 5.387 22 C -0.370 4.370 23 H 0.075 0.925 24 C -0.265 4.265 25 N -0.616 5.616 26 Si 0.799 3.201 27 H -0.214 1.214 28 H -0.213 1.213 29 H -0.204 1.204 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.081 0.919 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.265 0.735 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.159 0.841 39 H 0.157 0.843 40 H 0.144 0.856 41 H 0.103 0.897 42 H 0.086 0.914 43 H 0.126 0.874 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.084 0.916 47 H 0.040 0.960 48 H 0.077 0.923 49 H 0.041 0.959 50 H 0.028 0.972 51 H 0.204 0.796 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -31.606 14.252 2.681 34.774 hybrid contribution 1.339 -0.705 -0.111 1.517 sum -30.267 13.547 2.569 33.260 Atomic orbital electron populations 1.23027 0.78146 1.04014 1.01858 1.87984 1.22301 1.27262 1.95849 1.22407 0.88022 0.86680 1.05921 1.21209 0.90716 0.83975 0.75377 1.90766 1.76070 1.29309 1.50283 1.45556 1.05809 1.09504 1.75204 1.20762 0.79330 0.97093 1.01318 1.21796 0.89093 0.97556 1.08479 1.21262 0.90793 0.83603 0.75804 1.90893 1.74762 1.29147 1.50638 1.48209 1.05207 1.07736 1.72171 1.22210 0.99291 0.80698 0.99863 1.21973 0.94085 1.02243 0.98594 1.21554 0.97184 0.93474 1.02624 1.21352 0.99174 0.96514 0.94418 0.92945 1.21703 1.01247 0.99165 0.96680 1.21193 0.80443 0.95475 0.98003 0.91846 1.21154 0.82128 0.93650 0.98125 1.42684 1.02635 1.06804 1.86585 1.19442 0.90344 0.87812 1.39384 0.92484 1.25465 0.96748 1.00605 1.03666 1.69788 1.05434 1.28347 1.58050 0.85196 0.77691 0.79608 0.77632 1.21355 1.21256 1.20353 0.91942 0.89299 0.91907 0.86542 0.86602 0.73506 0.93819 0.93696 0.84134 0.84290 0.85606 0.89749 0.91395 0.87370 0.91313 0.91061 0.91649 0.95970 0.92282 0.95921 0.97176 0.79577 0.93914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.48 16 2 O -0.41 -8.05 10.24 -129.94 -1.33 -9.38 16 3 C 0.05 0.55 6.42 71.24 0.46 1.01 16 4 C 0.50 10.59 7.91 87.66 0.69 11.28 16 5 O -0.59 -21.01 16.50 16.01 0.26 -20.75 16 6 N -0.70 -9.55 5.56 -463.06 -2.57 -12.12 16 7 C 0.14 3.02 4.96 86.38 0.43 3.45 16 8 C -0.13 -1.72 4.22 29.85 0.13 -1.59 16 9 C 0.50 13.44 7.61 87.66 0.67 14.10 16 10 O -0.58 -23.51 11.40 -3.05 -0.03 -23.54 16 11 N -0.60 -14.49 2.41 -794.84 -1.92 -16.40 16 12 C 0.10 1.16 6.33 86.35 0.55 1.70 16 13 C -0.13 -1.60 5.74 30.67 0.18 -1.42 16 14 C -0.11 -2.22 5.43 30.62 0.17 -2.05 16 15 C -0.10 -2.98 2.56 -10.71 -0.03 -3.01 16 16 H 0.05 2.04 7.20 -2.39 -0.02 2.02 16 17 C -0.13 -4.23 8.20 71.98 0.59 -3.64 16 18 C 0.15 5.27 2.74 44.97 0.12 5.39 16 19 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 20 C 0.17 8.38 3.63 86.38 0.31 8.70 16 21 N -0.74 -41.95 5.28 -343.47 -1.81 -43.76 16 22 C -0.24 -14.88 9.99 84.03 0.84 -14.04 16 23 H 0.06 3.64 7.83 -2.91 -0.02 3.61 16 24 C -0.07 -4.50 5.50 84.86 0.47 -4.04 16 25 N -0.97 -61.76 13.06 21.65 0.28 -61.48 16 26 Si 0.97 50.20 29.55 68.60 2.03 52.23 16 27 H -0.29 -14.54 7.11 99.48 0.71 -13.84 16 28 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 29 H -0.28 -14.07 7.11 99.48 0.71 -13.36 16 30 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.43 0.95 8.47 -92.71 -0.79 0.16 16 36 H 0.04 1.27 8.10 -2.39 -0.02 1.25 16 37 H 0.04 1.29 8.10 -2.39 -0.02 1.27 16 38 H 0.14 0.73 7.47 -2.39 -0.02 0.71 16 39 H 0.14 0.80 8.11 -2.39 -0.02 0.78 16 40 H 0.13 0.38 5.97 -2.39 -0.01 0.36 16 41 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.07 0.92 6.34 -2.39 -0.02 0.90 16 43 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 46 H 0.06 1.82 5.98 -2.39 -0.01 1.80 16 47 H 0.02 0.91 6.35 -2.39 -0.02 0.89 16 48 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 49 H 0.02 1.19 5.23 -2.39 -0.01 1.18 16 50 H 0.01 0.56 6.44 -2.39 -0.02 0.55 16 51 H 0.37 21.47 6.80 -92.71 -0.63 20.84 16 52 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -98.81 403.81 1.24 -97.57 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -0.48 Total: 20.33 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: 6.82 Total: 17.32 kcal Atomic # 7 Polarization: -127.75 SS G_CDS: -6.02 Total: -133.77 kcal Atomic # 8 Polarization: -52.57 SS G_CDS: -1.10 Total: -53.67 kcal Atomic # 14 Polarization: 50.20 SS G_CDS: 2.03 Total: 52.23 kcal Total: -98.81 1.24 -97.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496461443.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.169 kcal (2) G-P(sol) polarization free energy of solvation -98.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds