Wall clock time and date at job start Wed Apr 1 2020 00:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00057 * 2 1 4 4 C 1.50702 * 109.46898 * 180.02562 * 3 2 1 5 5 O 1.21281 * 120.00418 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99630 * 180.02562 * 4 3 2 7 7 C 1.46507 * 119.99658 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.46743 * 180.02562 * 7 6 4 9 9 C 1.50702 * 109.47125 * 179.97438 * 8 7 6 10 10 O 1.21281 * 120.00008 * 0.02562 * 9 8 7 11 11 N 1.34770 * 120.00237 * 179.97438 * 9 8 7 12 12 C 1.46933 * 120.63097 * 355.42375 * 11 9 8 13 13 C 1.53194 * 108.77590 * 233.88576 * 12 11 9 14 14 C 1.53041 * 109.31197 * 305.36370 * 13 12 11 15 15 C 1.53046 * 109.53923 * 61.36566 * 14 13 12 16 16 H 1.08992 * 109.49428 * 58.58660 * 15 14 13 17 17 C 1.53001 * 109.52424 * 178.66785 * 15 14 13 18 18 C 1.46927 * 120.63383 * 175.70793 * 11 9 8 19 19 H 1.09005 * 109.58458 * 245.90631 * 18 11 9 20 20 C 1.52996 * 109.58344 * 6.18117 * 18 11 9 21 21 N 1.46509 * 109.47104 * 62.42517 * 20 18 11 22 22 C 1.36940 * 119.99964 * 183.64916 * 21 20 18 23 23 H 1.07993 * 120.00037 * 0.02562 * 22 21 20 24 24 C 1.38813 * 119.99788 * 179.97438 * 22 21 20 25 25 N 1.31625 * 119.99805 * 0.02562 * 24 22 21 26 26 Si 1.86790 * 120.00098 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47320 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47503 * 119.99722 * 26 24 22 29 29 H 1.48501 * 109.47141 * 240.00168 * 26 24 22 30 30 H 1.09004 * 109.47185 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46935 * 300.00375 * 1 2 3 32 32 H 1.08996 * 109.46919 * 60.00147 * 1 2 3 33 33 H 1.08996 * 109.46990 * 59.99935 * 3 2 1 34 34 H 1.09004 * 109.46962 * 299.99758 * 3 2 1 35 35 H 0.96996 * 120.00430 * 359.97438 * 6 4 3 36 36 H 1.08996 * 109.47400 * 60.00115 * 7 6 4 37 37 H 1.09004 * 109.47041 * 299.99638 * 7 6 4 38 38 H 1.09008 * 109.47413 * 59.99978 * 8 7 6 39 39 H 1.08997 * 109.47214 * 299.99948 * 8 7 6 40 40 H 1.08998 * 109.58316 * 353.67180 * 12 11 9 41 41 H 1.08999 * 109.58640 * 114.09479 * 12 11 9 42 42 H 1.08996 * 109.49916 * 185.41613 * 13 12 11 43 43 H 1.08997 * 109.49655 * 65.31493 * 13 12 11 44 44 H 1.09000 * 109.46132 * 301.34801 * 14 13 12 45 45 H 1.08994 * 109.46520 * 181.38754 * 14 13 12 46 46 H 1.08995 * 109.46752 * 179.85382 * 17 15 14 47 47 H 1.09002 * 109.46898 * 299.85580 * 17 15 14 48 48 H 1.09004 * 109.47138 * 59.85804 * 17 15 14 49 49 H 1.09008 * 109.47129 * 182.41959 * 20 18 11 50 50 H 1.09000 * 109.47774 * 302.42493 * 20 18 11 51 51 H 0.96998 * 119.99656 * 3.64890 * 21 20 18 52 52 H 0.96999 * 119.99669 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 8 4.0341 0.0915 -0.0006 6 7 4.2765 2.2968 -0.0002 7 6 5.7369 2.1810 -0.0003 8 6 6.3592 3.5787 0.0009 9 6 7.8615 3.4598 0.0015 10 8 8.3831 2.3649 0.0005 11 7 8.6255 4.5701 0.0020 12 6 8.0116 5.9012 -0.0989 13 6 8.6577 6.6550 -1.2655 14 6 10.1762 6.6759 -1.0757 15 6 10.7112 5.2420 -1.0716 16 1 10.4492 4.7533 -2.0099 17 6 12.2331 5.2646 -0.9151 18 6 10.0884 4.4722 0.0972 19 1 10.4230 4.9054 1.0398 20 6 10.5095 3.0029 0.0300 21 7 10.1155 2.4406 -1.2643 22 6 10.3228 1.1125 -1.5255 23 1 10.7764 0.4794 -0.7773 24 6 9.9490 0.5797 -2.7516 25 7 9.3957 1.3512 -3.6632 26 14 10.2312 -1.2321 -3.1077 27 1 10.8629 -1.8760 -1.9281 28 1 8.9302 -1.8892 -3.3920 29 1 11.1243 -1.3718 -4.2859 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6886 1.8463 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 3.8594 3.1725 0.0001 36 1 6.0586 1.6405 -0.8904 37 1 6.0586 1.6398 0.8896 38 1 6.0376 4.1190 0.8914 39 1 6.0376 4.1204 -0.8886 40 1 6.9416 5.7974 -0.2787 41 1 8.1768 6.4509 0.8277 42 1 8.2804 7.6772 -1.2918 43 1 8.4150 6.1529 -2.2020 44 1 10.4170 7.1560 -0.1273 45 1 10.6366 7.2329 -1.8916 46 1 12.6129 4.2430 -0.9097 47 1 12.6757 5.8125 -1.7470 48 1 12.4946 5.7544 0.0229 49 1 11.5911 2.9294 0.1439 50 1 10.0212 2.4479 0.8310 51 1 9.7077 3.0092 -1.9361 52 1 9.1341 0.9788 -4.5198 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496461444.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:15 Heat of formation + Delta-G solvation = -65.926103 kcal Electronic energy + Delta-G solvation = -31778.141374 eV Core-core repulsion = 27586.894434 eV Total energy + Delta-G solvation = -4191.246940 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.27969 -39.65226 -37.68063 -37.19401 -35.16669 -34.47816 -33.14996 -32.02003 -31.08745 -29.94664 -28.81826 -27.03429 -26.08870 -25.80693 -24.14564 -22.90322 -22.49902 -21.05426 -20.72965 -19.78330 -18.32891 -17.33386 -17.00757 -16.87798 -16.50206 -16.35159 -15.60124 -15.44392 -15.15559 -14.76894 -14.45347 -14.35802 -14.23110 -14.11876 -13.73319 -13.24353 -13.17649 -12.95790 -12.81914 -12.67882 -12.60000 -12.23892 -12.04385 -11.87995 -11.70747 -11.59990 -11.52199 -11.32246 -11.16152 -10.98759 -10.62582 -10.57947 -10.52925 -10.34176 -10.04542 -9.97610 -9.75967 -9.71694 -9.40551 -8.97673 -8.63190 -8.27679 -7.95437 -6.43006 -5.47320 -2.66780 2.66624 2.72832 3.34330 3.48663 3.63063 3.70049 3.70865 3.94611 4.61751 4.81525 4.83022 4.87011 4.90917 4.93812 5.01849 5.02619 5.05438 5.09927 5.14746 5.25176 5.28023 5.39748 5.44137 5.46336 5.63044 5.69857 5.82763 5.83901 5.88547 5.92535 5.97979 6.05557 6.10670 6.13094 6.29113 6.34188 6.39298 6.47313 6.50180 6.60336 6.74658 6.75930 6.89368 7.04812 7.30663 7.49616 7.98291 8.00804 8.28518 8.71693 8.99168 9.83949 10.42214 10.77317 11.77103 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.008898 B = 0.003655 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3146.169153 B = 7658.168369 C =10144.882402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.045 3.955 4 C 0.507 3.493 5 O -0.509 6.509 6 N -0.730 5.730 7 C 0.136 3.864 8 C -0.145 4.145 9 C 0.482 3.518 10 O -0.439 6.439 11 N -0.616 5.616 12 C 0.114 3.886 13 C -0.137 4.137 14 C -0.112 4.112 15 C -0.103 4.103 16 H 0.088 0.912 17 C -0.141 4.141 18 C 0.150 3.850 19 H 0.062 0.938 20 C 0.156 3.844 21 N -0.697 5.697 22 C -0.196 4.196 23 H 0.064 0.936 24 C -0.023 4.023 25 N -0.943 5.943 26 Si 0.897 3.103 27 H -0.284 1.284 28 H -0.295 1.295 29 H -0.298 1.298 30 H 0.090 0.910 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.396 0.604 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.067 0.933 47 H 0.050 0.950 48 H 0.046 0.954 49 H 0.010 0.990 50 H 0.047 0.953 51 H 0.379 0.621 52 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.033 15.803 9.472 22.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C -0.035 4.035 4 C 0.291 3.709 5 O -0.383 6.383 6 N -0.384 5.384 7 C 0.013 3.987 8 C -0.185 4.185 9 C 0.267 3.733 10 O -0.307 6.307 11 N -0.354 5.354 12 C -0.010 4.010 13 C -0.175 4.175 14 C -0.150 4.150 15 C -0.123 4.123 16 H 0.106 0.894 17 C -0.198 4.198 18 C 0.047 3.953 19 H 0.080 0.920 20 C 0.029 3.971 21 N -0.341 5.341 22 C -0.328 4.328 23 H 0.082 0.918 24 C -0.216 4.216 25 N -0.594 5.594 26 Si 0.731 3.269 27 H -0.209 1.209 28 H -0.223 1.223 29 H -0.225 1.225 30 H 0.109 0.891 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.229 0.771 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.069 0.931 48 H 0.065 0.935 49 H 0.028 0.972 50 H 0.064 0.936 51 H 0.213 0.787 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -12.195 13.945 9.532 20.833 hybrid contribution -0.629 0.157 -0.643 0.913 sum -12.824 14.102 8.889 21.031 Atomic orbital electron populations 1.22833 0.80530 1.03322 0.99976 1.88052 1.19642 1.25242 1.95375 1.22240 0.91932 0.86968 1.02390 1.20193 0.88479 0.84798 0.77379 1.90803 1.74425 1.26383 1.46660 1.45872 1.07630 1.08312 1.76622 1.21109 0.76782 0.96059 1.04783 1.21770 0.95097 0.98293 1.03388 1.20063 0.88012 0.84974 0.80294 1.91119 1.71863 1.25637 1.42057 1.47870 1.06296 1.05258 1.75969 1.21566 0.97415 0.84038 0.97938 1.21929 0.96358 0.99874 0.99354 1.21571 0.94986 0.97088 1.01305 1.21514 0.95370 0.94770 1.00636 0.89385 1.21750 0.94940 1.02691 1.00467 1.21498 0.78787 0.98435 0.96622 0.92038 1.20989 0.95159 0.88720 0.92231 1.42227 1.72644 1.07699 1.11529 1.19149 1.30226 0.86117 0.97288 0.91848 1.24529 1.02874 0.97108 0.97124 1.69646 1.49452 1.33873 1.06468 0.86215 0.77066 0.86350 0.77313 1.20903 1.22283 1.22549 0.89113 0.93912 0.93826 0.90398 0.90292 0.77089 0.89505 0.90633 0.89619 0.89259 0.90434 0.92294 0.91477 0.91153 0.92455 0.92139 0.91363 0.93087 0.93530 0.97221 0.93562 0.78666 0.94313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.37 -4.74 10.24 -55.14 -0.56 -5.31 16 3 C 0.04 0.46 6.42 36.01 0.23 0.69 16 4 C 0.51 7.48 7.91 -10.98 -0.09 7.40 16 5 O -0.51 -10.71 16.50 -14.35 -0.24 -10.94 16 6 N -0.73 -8.80 5.56 -60.29 -0.33 -9.13 16 7 C 0.14 2.15 4.96 -4.04 -0.02 2.13 16 8 C -0.14 -1.86 4.20 -27.88 -0.12 -1.98 16 9 C 0.48 8.48 7.16 -10.99 -0.08 8.40 16 10 O -0.44 -10.11 9.58 5.56 0.05 -10.06 16 11 N -0.62 -9.28 2.93 -165.22 -0.48 -9.76 16 12 C 0.11 1.22 6.33 -3.71 -0.02 1.19 16 13 C -0.14 -1.48 6.08 -26.61 -0.16 -1.64 16 14 C -0.11 -1.31 5.17 -26.69 -0.14 -1.45 16 15 C -0.10 -1.58 2.21 -90.50 -0.20 -1.78 16 16 H 0.09 1.71 6.49 -51.93 -0.34 1.37 16 17 C -0.14 -2.00 8.97 37.16 0.33 -1.67 16 18 C 0.15 2.44 2.63 -67.60 -0.18 2.26 16 19 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 20 C 0.16 3.31 4.75 -4.04 -0.02 3.29 16 21 N -0.70 -17.97 3.05 -59.90 -0.18 -18.15 16 22 C -0.20 -5.79 9.28 -15.06 -0.14 -5.93 16 23 H 0.06 1.89 7.83 -52.49 -0.41 1.48 16 24 C -0.02 -0.69 5.50 -17.43 -0.10 -0.79 16 25 N -0.94 -29.82 13.06 55.49 0.72 -29.10 16 26 Si 0.90 24.58 29.55 -169.99 -5.02 19.56 16 27 H -0.28 -7.59 7.11 56.52 0.40 -7.19 16 28 H -0.30 -8.30 7.11 56.52 0.40 -7.90 16 29 H -0.30 -8.09 7.11 56.52 0.40 -7.68 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.40 2.94 8.47 -40.82 -0.35 2.60 16 36 H 0.09 1.80 8.10 -51.93 -0.42 1.38 16 37 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 38 H 0.09 0.81 8.10 -51.92 -0.42 0.39 16 39 H 0.09 1.01 7.50 -51.93 -0.39 0.62 16 40 H 0.08 0.68 5.95 -51.93 -0.31 0.37 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.07 1.13 6.68 -51.93 -0.35 0.78 16 47 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.01 0.22 6.76 -51.92 -0.35 -0.13 16 50 H 0.05 1.08 6.25 -51.93 -0.32 0.75 16 51 H 0.38 10.28 5.89 -40.82 -0.24 10.04 16 52 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 404.65 15.07 6.10 6.10 Total: -1.00 -39.50 404.65 -8.48 -47.99 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -8.95 Total: 7.34 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: 0.42 Total: 11.47 kcal Atomic # 7 Polarization: -65.87 SS G_CDS: -0.28 Total: -66.15 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.75 Total: -26.31 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -5.02 Total: 19.56 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -39.50 -8.48 -47.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496461444.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.941 kcal (2) G-P(sol) polarization free energy of solvation -39.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds