Wall clock time and date at job start Wed Apr 1 2020 00:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00057 * 2 1 4 4 C 1.50702 * 109.46898 * 180.02562 * 3 2 1 5 5 O 1.21281 * 120.00418 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99630 * 180.02562 * 4 3 2 7 7 C 1.46507 * 119.99658 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.46743 * 180.02562 * 7 6 4 9 9 C 1.50702 * 109.47125 * 179.97438 * 8 7 6 10 10 O 1.21281 * 120.00008 * 0.02562 * 9 8 7 11 11 N 1.34770 * 120.00237 * 179.97438 * 9 8 7 12 12 C 1.46933 * 120.63097 * 355.42375 * 11 9 8 13 13 C 1.53194 * 108.77590 * 233.88576 * 12 11 9 14 14 C 1.53041 * 109.31197 * 305.36370 * 13 12 11 15 15 C 1.53046 * 109.53923 * 61.36566 * 14 13 12 16 16 H 1.08992 * 109.49428 * 58.58660 * 15 14 13 17 17 C 1.53001 * 109.52424 * 178.66785 * 15 14 13 18 18 C 1.46927 * 120.63383 * 175.70793 * 11 9 8 19 19 H 1.09005 * 109.58458 * 245.90631 * 18 11 9 20 20 C 1.52996 * 109.58344 * 6.18117 * 18 11 9 21 21 N 1.46509 * 109.47104 * 62.42517 * 20 18 11 22 22 C 1.36940 * 119.99964 * 183.64916 * 21 20 18 23 23 H 1.07993 * 120.00037 * 0.02562 * 22 21 20 24 24 C 1.38813 * 119.99788 * 179.97438 * 22 21 20 25 25 N 1.31625 * 119.99805 * 0.02562 * 24 22 21 26 26 Si 1.86790 * 120.00098 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47320 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47503 * 119.99722 * 26 24 22 29 29 H 1.48501 * 109.47141 * 240.00168 * 26 24 22 30 30 H 1.09004 * 109.47185 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46935 * 300.00375 * 1 2 3 32 32 H 1.08996 * 109.46919 * 60.00147 * 1 2 3 33 33 H 1.08996 * 109.46990 * 59.99935 * 3 2 1 34 34 H 1.09004 * 109.46962 * 299.99758 * 3 2 1 35 35 H 0.96996 * 120.00430 * 359.97438 * 6 4 3 36 36 H 1.08996 * 109.47400 * 60.00115 * 7 6 4 37 37 H 1.09004 * 109.47041 * 299.99638 * 7 6 4 38 38 H 1.09008 * 109.47413 * 59.99978 * 8 7 6 39 39 H 1.08997 * 109.47214 * 299.99948 * 8 7 6 40 40 H 1.08998 * 109.58316 * 353.67180 * 12 11 9 41 41 H 1.08999 * 109.58640 * 114.09479 * 12 11 9 42 42 H 1.08996 * 109.49916 * 185.41613 * 13 12 11 43 43 H 1.08997 * 109.49655 * 65.31493 * 13 12 11 44 44 H 1.09000 * 109.46132 * 301.34801 * 14 13 12 45 45 H 1.08994 * 109.46520 * 181.38754 * 14 13 12 46 46 H 1.08995 * 109.46752 * 179.85382 * 17 15 14 47 47 H 1.09002 * 109.46898 * 299.85580 * 17 15 14 48 48 H 1.09004 * 109.47138 * 59.85804 * 17 15 14 49 49 H 1.09008 * 109.47129 * 182.41959 * 20 18 11 50 50 H 1.09000 * 109.47774 * 302.42493 * 20 18 11 51 51 H 0.96998 * 119.99656 * 3.64890 * 21 20 18 52 52 H 0.96999 * 119.99669 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 8 4.0341 0.0915 -0.0006 6 7 4.2765 2.2968 -0.0002 7 6 5.7369 2.1810 -0.0003 8 6 6.3592 3.5787 0.0009 9 6 7.8615 3.4598 0.0015 10 8 8.3831 2.3649 0.0005 11 7 8.6255 4.5701 0.0020 12 6 8.0116 5.9012 -0.0989 13 6 8.6577 6.6550 -1.2655 14 6 10.1762 6.6759 -1.0757 15 6 10.7112 5.2420 -1.0716 16 1 10.4492 4.7533 -2.0099 17 6 12.2331 5.2646 -0.9151 18 6 10.0884 4.4722 0.0972 19 1 10.4230 4.9054 1.0398 20 6 10.5095 3.0029 0.0300 21 7 10.1155 2.4406 -1.2643 22 6 10.3228 1.1125 -1.5255 23 1 10.7764 0.4794 -0.7773 24 6 9.9490 0.5797 -2.7516 25 7 9.3957 1.3512 -3.6632 26 14 10.2312 -1.2321 -3.1077 27 1 10.8629 -1.8760 -1.9281 28 1 8.9302 -1.8892 -3.3920 29 1 11.1243 -1.3718 -4.2859 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6886 1.8463 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 3.8594 3.1725 0.0001 36 1 6.0586 1.6405 -0.8904 37 1 6.0586 1.6398 0.8896 38 1 6.0376 4.1190 0.8914 39 1 6.0376 4.1204 -0.8886 40 1 6.9416 5.7974 -0.2787 41 1 8.1768 6.4509 0.8277 42 1 8.2804 7.6772 -1.2918 43 1 8.4150 6.1529 -2.2020 44 1 10.4170 7.1560 -0.1273 45 1 10.6366 7.2329 -1.8916 46 1 12.6129 4.2430 -0.9097 47 1 12.6757 5.8125 -1.7470 48 1 12.4946 5.7544 0.0229 49 1 11.5911 2.9294 0.1439 50 1 10.0212 2.4479 0.8310 51 1 9.7077 3.0092 -1.9361 52 1 9.1341 0.9788 -4.5198 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496461444.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:14 Heat of formation + Delta-G solvation = -96.958423 kcal Electronic energy + Delta-G solvation = -31779.487036 eV Core-core repulsion = 27586.894434 eV Total energy + Delta-G solvation = -4192.592602 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.57529 -40.81163 -38.67942 -38.34256 -36.63595 -36.01277 -34.60860 -33.60724 -32.24480 -31.71326 -29.73742 -28.43525 -26.98541 -26.86321 -25.75727 -24.53723 -23.83245 -22.21554 -21.90861 -21.05014 -19.56741 -19.12124 -18.33283 -18.00815 -17.45543 -17.38795 -16.88150 -16.72503 -16.37957 -16.25973 -15.79115 -15.76105 -15.43324 -15.33616 -14.94896 -14.73646 -14.60023 -14.33605 -14.10115 -13.97981 -13.79034 -13.39839 -13.23617 -13.13818 -13.03921 -12.85486 -12.83519 -12.65078 -12.42054 -12.36245 -12.34275 -12.10736 -12.01208 -11.70287 -11.55135 -11.37628 -11.08187 -10.99063 -10.84004 -10.76122 -10.21716 -9.75396 -9.31898 -8.55404 -7.83894 -4.98941 1.37307 1.42512 1.48706 1.53234 1.71653 2.05844 2.34940 2.61060 3.14420 3.50600 3.63929 3.78902 3.81406 3.92430 4.01094 4.09291 4.11658 4.18001 4.19276 4.29505 4.32417 4.38768 4.48705 4.50357 4.55926 4.58845 4.67385 4.72171 4.86124 4.87188 4.89091 4.93805 4.96503 4.99329 5.02813 5.08958 5.19261 5.24829 5.32350 5.35729 5.46140 5.50695 5.54397 5.66642 5.93100 6.06078 6.39419 6.54684 6.77297 7.24381 7.46787 7.68680 8.28679 8.51969 9.41020 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.008898 B = 0.003655 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3146.169153 B = 7658.168369 C =10144.882402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.052 3.948 4 C 0.497 3.503 5 O -0.587 6.587 6 N -0.704 5.704 7 C 0.148 3.852 8 C -0.126 4.126 9 C 0.472 3.528 10 O -0.513 6.513 11 N -0.613 5.613 12 C 0.106 3.894 13 C -0.135 4.135 14 C -0.106 4.106 15 C -0.099 4.099 16 H 0.037 0.963 17 C -0.137 4.137 18 C 0.154 3.846 19 H 0.094 0.906 20 C 0.157 3.843 21 N -0.696 5.696 22 C -0.189 4.189 23 H 0.053 0.947 24 C -0.083 4.083 25 N -0.971 5.971 26 Si 0.951 3.049 27 H -0.275 1.275 28 H -0.308 1.308 29 H -0.290 1.290 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.122 0.878 34 H 0.114 0.886 35 H 0.425 0.575 36 H 0.024 0.976 37 H 0.046 0.954 38 H 0.138 0.862 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.040 0.960 44 H 0.085 0.915 45 H 0.065 0.935 46 H 0.033 0.967 47 H 0.058 0.942 48 H 0.076 0.924 49 H 0.006 0.994 50 H 0.025 0.975 51 H 0.370 0.630 52 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.083 20.301 11.135 27.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C -0.027 4.027 4 C 0.284 3.716 5 O -0.466 6.466 6 N -0.360 5.360 7 C 0.023 3.977 8 C -0.166 4.166 9 C 0.259 3.741 10 O -0.386 6.386 11 N -0.350 5.350 12 C -0.015 4.015 13 C -0.173 4.173 14 C -0.143 4.143 15 C -0.118 4.118 16 H 0.055 0.945 17 C -0.195 4.195 18 C 0.051 3.949 19 H 0.111 0.889 20 C 0.031 3.969 21 N -0.337 5.337 22 C -0.323 4.323 23 H 0.071 0.929 24 C -0.274 4.274 25 N -0.626 5.626 26 Si 0.783 3.217 27 H -0.200 1.200 28 H -0.236 1.236 29 H -0.217 1.217 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.139 0.861 34 H 0.131 0.869 35 H 0.263 0.737 36 H 0.042 0.958 37 H 0.065 0.935 38 H 0.156 0.844 39 H 0.133 0.867 40 H 0.122 0.878 41 H 0.111 0.889 42 H 0.123 0.877 43 H 0.059 0.941 44 H 0.103 0.897 45 H 0.084 0.916 46 H 0.053 0.947 47 H 0.077 0.923 48 H 0.095 0.905 49 H 0.023 0.977 50 H 0.043 0.957 51 H 0.204 0.796 52 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -14.264 18.575 11.232 25.974 hybrid contribution 0.000 -1.167 -1.061 1.577 sum -14.264 17.408 10.171 24.696 Atomic orbital electron populations 1.23039 0.78057 1.04061 1.01902 1.87992 1.22421 1.27161 1.95847 1.22379 0.87627 0.86725 1.05937 1.21328 0.90922 0.83944 0.75427 1.90770 1.76174 1.29382 1.50300 1.45574 1.05832 1.09473 1.75112 1.20647 0.79248 0.97363 1.00439 1.21689 0.91345 0.96650 1.06964 1.20959 0.90137 0.84616 0.78434 1.91099 1.73472 1.28279 1.45720 1.48035 1.05666 1.06782 1.74479 1.22002 0.98605 0.81427 0.99460 1.21937 0.95691 1.01678 0.97962 1.21546 0.95670 0.94053 1.03044 1.21418 0.96065 0.96893 0.97471 0.94484 1.21713 0.94276 1.01055 1.02423 1.21399 0.80140 0.94859 0.98529 0.88854 1.20998 0.94394 0.92154 0.89353 1.42208 1.72275 1.06219 1.13047 1.19383 1.28360 0.87876 0.96636 0.92891 1.25130 1.04263 1.00467 0.97498 1.69774 1.51300 1.34949 1.06540 0.85344 0.76299 0.82550 0.77458 1.20019 1.23633 1.21729 0.89203 0.91642 0.92078 0.86093 0.86865 0.73664 0.95770 0.93503 0.84366 0.86699 0.87794 0.88883 0.87667 0.94138 0.89660 0.91587 0.94742 0.92255 0.90543 0.97655 0.95732 0.79636 0.95014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 11.01 113.37 1.25 1.59 16 2 O -0.42 -10.43 10.24 -129.94 -1.33 -11.76 16 3 C 0.05 0.94 6.42 71.24 0.46 1.39 16 4 C 0.50 14.70 7.91 87.66 0.69 15.39 16 5 O -0.59 -26.40 16.50 16.00 0.26 -26.14 16 6 N -0.70 -16.22 5.56 -463.04 -2.57 -18.79 16 7 C 0.15 4.88 4.96 86.38 0.43 5.31 16 8 C -0.13 -3.00 4.20 29.85 0.13 -2.88 16 9 C 0.47 16.60 7.16 87.66 0.63 17.22 16 10 O -0.51 -25.06 9.58 -3.03 -0.03 -25.09 16 11 N -0.61 -17.31 2.93 -795.02 -2.33 -19.65 16 12 C 0.11 1.74 6.33 86.36 0.55 2.29 16 13 C -0.13 -2.35 6.08 30.67 0.19 -2.16 16 14 C -0.11 -2.09 5.17 30.62 0.16 -1.94 16 15 C -0.10 -2.93 2.21 -10.72 -0.02 -2.95 16 16 H 0.04 1.49 6.49 -2.39 -0.02 1.47 16 17 C -0.14 -3.77 8.97 71.98 0.65 -3.13 16 18 C 0.15 4.87 2.63 44.97 0.12 4.98 16 19 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 20 C 0.16 6.96 4.75 86.38 0.41 7.37 16 21 N -0.70 -38.03 3.05 -343.43 -1.05 -39.07 16 22 C -0.19 -11.85 9.28 84.03 0.78 -11.07 16 23 H 0.05 3.35 7.83 -2.91 -0.02 3.33 16 24 C -0.08 -5.33 5.50 84.86 0.47 -4.86 16 25 N -0.97 -64.60 13.06 21.65 0.28 -64.32 16 26 Si 0.95 53.10 29.55 68.60 2.03 55.13 16 27 H -0.28 -14.78 7.11 99.48 0.71 -14.07 16 28 H -0.31 -17.69 7.11 99.48 0.71 -16.99 16 29 H -0.29 -15.67 7.11 99.48 0.71 -14.96 16 30 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.42 4.71 8.47 -92.71 -0.79 3.93 16 36 H 0.02 1.09 8.10 -2.39 -0.02 1.07 16 37 H 0.05 1.80 8.10 -2.38 -0.02 1.78 16 38 H 0.14 1.90 8.10 -2.38 -0.02 1.88 16 39 H 0.11 2.21 7.50 -2.39 -0.02 2.19 16 40 H 0.10 1.18 5.95 -2.39 -0.01 1.17 16 41 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.03 1.16 6.68 -2.39 -0.02 1.14 16 47 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.01 0.26 6.76 -2.38 -0.02 0.25 16 50 H 0.02 1.22 6.25 -2.39 -0.01 1.20 16 51 H 0.37 21.34 5.89 -92.71 -0.55 20.79 16 52 H 0.24 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -100.03 404.65 1.72 -98.31 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: -0.41 Total: 24.81 kcal Atomic # 6 Polarization: 19.70 SS G_CDS: 6.87 Total: 26.57 kcal Atomic # 7 Polarization: -136.15 SS G_CDS: -5.67 Total: -141.82 kcal Atomic # 8 Polarization: -61.89 SS G_CDS: -1.10 Total: -62.99 kcal Atomic # 14 Polarization: 53.10 SS G_CDS: 2.03 Total: 55.13 kcal Total: -100.03 1.72 -98.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496461444.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.350 kcal (2) G-P(sol) polarization free energy of solvation -100.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds