Wall clock time and date at job start Wed Apr 1 2020 00:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99908 * 2 1 4 4 C 1.50704 * 109.47369 * 180.02562 * 3 2 1 5 5 O 1.21272 * 119.99671 * 359.97438 * 4 3 2 6 6 N 1.34772 * 119.99839 * 180.02562 * 4 3 2 7 7 C 1.46506 * 120.00085 * 180.02562 * 6 4 3 8 8 C 1.52995 * 109.47398 * 179.97438 * 7 6 4 9 9 C 1.50695 * 109.47094 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00202 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00091 * 180.02562 * 9 8 7 12 12 C 1.46924 * 120.62927 * 5.93875 * 11 9 8 13 13 C 1.53194 * 108.77950 * 126.41662 * 12 11 9 14 14 C 1.53034 * 109.31218 * 54.62883 * 13 12 11 15 15 C 1.53043 * 109.54140 * 298.63790 * 14 13 12 16 16 H 1.08996 * 109.49852 * 301.41706 * 15 14 13 17 17 C 1.52996 * 109.49870 * 181.31720 * 15 14 13 18 18 C 1.46926 * 120.63175 * 185.95775 * 11 9 8 19 19 H 1.08999 * 109.58472 * 113.65740 * 18 11 9 20 20 C 1.53002 * 109.58683 * 353.37630 * 18 11 9 21 21 N 1.46496 * 109.47393 * 69.53525 * 20 18 11 22 22 C 1.36932 * 120.00048 * 174.76056 * 21 20 18 23 23 H 1.07998 * 119.99919 * 0.02562 * 22 21 20 24 24 C 1.38815 * 119.99850 * 179.97438 * 22 21 20 25 25 N 1.31613 * 120.00211 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99848 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46807 * 90.00152 * 26 24 22 28 28 H 1.48496 * 109.47356 * 209.99939 * 26 24 22 29 29 H 1.48496 * 109.47277 * 330.00761 * 26 24 22 30 30 H 1.08994 * 109.47399 * 299.99919 * 1 2 3 31 31 H 1.08996 * 109.47091 * 60.00498 * 1 2 3 32 32 H 1.09001 * 109.46859 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47562 * 59.99584 * 3 2 1 34 34 H 1.09002 * 109.47129 * 300.00359 * 3 2 1 35 35 H 0.97000 * 120.00311 * 359.97438 * 6 4 3 36 36 H 1.09003 * 109.46855 * 59.99439 * 7 6 4 37 37 H 1.09003 * 109.46508 * 300.00095 * 7 6 4 38 38 H 1.09008 * 109.46883 * 59.99785 * 8 7 6 39 39 H 1.09002 * 109.47466 * 300.00270 * 8 7 6 40 40 H 1.09003 * 109.58320 * 246.20070 * 12 11 9 41 41 H 1.08999 * 109.58676 * 6.48117 * 12 11 9 42 42 H 1.09002 * 109.49950 * 174.58498 * 13 12 11 43 43 H 1.08999 * 109.49338 * 294.68113 * 13 12 11 44 44 H 1.09002 * 109.46153 * 58.66327 * 14 13 12 45 45 H 1.09003 * 109.46136 * 178.63374 * 14 13 12 46 46 H 1.09000 * 109.47220 * 300.16232 * 17 15 14 47 47 H 1.09003 * 109.47162 * 60.16065 * 17 15 14 48 48 H 1.09000 * 109.47452 * 180.16305 * 17 15 14 49 49 H 1.09002 * 109.46843 * 189.54052 * 20 18 11 50 50 H 1.09000 * 109.46760 * 309.53731 * 20 18 11 51 51 H 0.96998 * 119.99585 * 354.76723 * 21 20 18 52 52 H 0.97004 * 120.00345 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 8 4.0341 0.0917 -0.0006 6 7 4.2764 2.2969 -0.0002 7 6 5.7368 2.1814 -0.0014 8 6 6.3591 3.5791 -0.0013 9 6 7.8613 3.4602 -0.0019 10 8 8.3830 2.3653 -0.0019 11 7 8.6252 4.5706 -0.0013 12 6 8.0136 5.8999 0.1306 13 6 8.6875 6.6400 1.2903 14 6 10.2008 6.6640 1.0641 15 6 10.7361 5.2307 1.0296 16 1 10.4970 4.7304 1.9680 17 6 12.2536 5.2568 0.8362 18 6 10.0854 4.4747 -0.1331 19 1 10.3967 4.9174 -1.0793 20 6 10.5089 3.0051 -0.0904 21 7 10.0614 2.3322 -1.3124 22 6 10.4200 1.0320 -1.5485 23 1 11.0324 0.5024 -0.8338 24 6 9.9956 0.3943 -2.7061 25 7 9.2489 1.0395 -3.5770 26 14 10.4854 -1.3793 -3.0287 27 1 9.4633 -2.2881 -2.4500 28 1 10.5794 -1.6085 -4.4928 29 1 11.8026 -1.6514 -2.3993 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6885 1.8465 0.8899 34 1 1.6885 1.8464 -0.8900 35 1 3.8592 3.1727 0.0001 36 1 6.0578 1.6412 -0.8921 37 1 6.0591 1.6397 0.8879 38 1 6.0380 4.1197 0.8892 39 1 6.0367 4.1205 -0.8908 40 1 8.1562 6.4610 -0.7930 41 1 6.9477 5.7933 0.3325 42 1 8.3105 7.6616 1.3381 43 1 8.4677 6.1264 2.2263 44 1 10.4185 7.1559 0.1160 45 1 10.6807 7.2112 1.8756 46 1 12.4918 5.7585 -0.1017 47 1 12.7161 5.7948 1.6637 48 1 12.6340 4.2357 0.8088 49 1 11.5946 2.9419 -0.0175 50 1 10.0578 2.5221 0.7763 51 1 9.5112 2.8079 -1.9542 52 1 8.9525 0.5940 -4.3861 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496461445.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:19 Heat of formation + Delta-G solvation = -67.978779 kcal Electronic energy + Delta-G solvation = -31484.357910 eV Core-core repulsion = 27293.021960 eV Total energy + Delta-G solvation = -4191.335951 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.29588 -39.64434 -37.68717 -37.26437 -35.17091 -34.42020 -33.40610 -32.08595 -31.11465 -30.09745 -28.80653 -27.03039 -26.11731 -25.86688 -24.19093 -23.00448 -22.32018 -20.88616 -20.72523 -20.11035 -18.62932 -17.34716 -17.08509 -16.80952 -16.49038 -16.25512 -15.61204 -15.52593 -15.13315 -14.78839 -14.66607 -14.44369 -14.36877 -14.00538 -13.63608 -13.29779 -13.20939 -12.98797 -12.89961 -12.72671 -12.53510 -12.32683 -12.24616 -11.98537 -11.70155 -11.69434 -11.54387 -11.41141 -11.21548 -10.96407 -10.81042 -10.62071 -10.60894 -10.52507 -10.10901 -10.03677 -9.74869 -9.73173 -9.43516 -8.96453 -8.66692 -8.26191 -8.02867 -6.44970 -5.48730 -2.68442 2.67972 2.73630 3.34032 3.42181 3.62810 3.67627 3.69265 3.95168 4.62294 4.70225 4.78421 4.80681 4.85327 4.90641 4.91956 5.00570 5.04812 5.06410 5.10579 5.11733 5.26705 5.34316 5.40491 5.41375 5.56527 5.59558 5.72270 5.75941 5.80251 5.85577 5.90378 5.90928 6.03718 6.10629 6.14171 6.18567 6.34623 6.36278 6.46231 6.48805 6.64335 6.72402 6.76520 6.99959 7.34117 7.50739 7.94940 7.97194 8.29940 8.69787 8.95822 9.81556 10.40885 10.75080 11.75385 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007688 B = 0.003759 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3641.179090 B = 7446.819590 C =10643.723780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.365 6.365 3 C 0.045 3.955 4 C 0.507 3.493 5 O -0.509 6.509 6 N -0.730 5.730 7 C 0.135 3.865 8 C -0.144 4.144 9 C 0.478 3.522 10 O -0.438 6.438 11 N -0.618 5.618 12 C 0.112 3.888 13 C -0.134 4.134 14 C -0.113 4.113 15 C -0.098 4.098 16 H 0.072 0.928 17 C -0.146 4.146 18 C 0.148 3.852 19 H 0.067 0.933 20 C 0.159 3.841 21 N -0.698 5.698 22 C -0.207 4.207 23 H 0.064 0.936 24 C -0.020 4.020 25 N -0.939 5.939 26 Si 0.899 3.101 27 H -0.292 1.292 28 H -0.295 1.295 29 H -0.285 1.285 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.396 0.604 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.055 0.945 47 H 0.051 0.949 48 H 0.065 0.935 49 H 0.017 0.983 50 H 0.041 0.959 51 H 0.378 0.622 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.738 16.651 11.073 23.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C -0.035 4.035 4 C 0.291 3.709 5 O -0.382 6.382 6 N -0.384 5.384 7 C 0.012 3.988 8 C -0.185 4.185 9 C 0.262 3.738 10 O -0.306 6.306 11 N -0.356 5.356 12 C -0.012 4.012 13 C -0.172 4.172 14 C -0.150 4.150 15 C -0.118 4.118 16 H 0.090 0.910 17 C -0.204 4.204 18 C 0.045 3.955 19 H 0.085 0.915 20 C 0.032 3.968 21 N -0.341 5.341 22 C -0.339 4.339 23 H 0.082 0.918 24 C -0.214 4.214 25 N -0.590 5.590 26 Si 0.732 3.268 27 H -0.220 1.220 28 H -0.222 1.222 29 H -0.211 1.211 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.229 0.771 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.070 0.930 48 H 0.084 0.916 49 H 0.034 0.966 50 H 0.058 0.942 51 H 0.211 0.789 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.867 14.799 11.087 21.972 hybrid contribution -0.576 0.130 -0.521 0.788 sum -12.444 14.929 10.565 22.122 Atomic orbital electron populations 1.22832 0.80539 1.03321 0.99967 1.88054 1.19633 1.25240 1.95372 1.22240 0.91944 0.86963 1.02376 1.20187 0.88473 0.84805 0.77408 1.90804 1.74413 1.26376 1.46595 1.45866 1.07621 1.08300 1.76657 1.21112 0.76786 0.96016 1.04853 1.21771 0.95037 0.98330 1.03375 1.20097 0.88094 0.84953 0.80689 1.91156 1.71890 1.25628 1.41923 1.47850 1.06586 1.05307 1.75848 1.21576 0.97268 0.84252 0.98089 1.21914 0.96248 1.00119 0.98946 1.21569 0.95045 0.96658 1.01772 1.21464 0.95541 0.95483 0.99357 0.90972 1.21843 0.94598 1.02689 1.01289 1.21511 0.78626 0.98531 0.96826 0.91531 1.20970 0.95153 0.87708 0.92997 1.42212 1.60912 1.11613 1.19313 1.19122 1.23938 0.88969 1.01848 0.91810 1.24568 1.01293 0.97714 0.97817 1.69637 1.41543 1.36035 1.11784 0.86278 0.77794 0.86083 0.76674 1.21985 1.22205 1.21127 0.93921 0.93826 0.89117 0.90418 0.90296 0.77112 0.89412 0.90659 0.89670 0.89221 0.92020 0.90352 0.91271 0.91691 0.91890 0.92073 0.92635 0.92985 0.91557 0.96573 0.94186 0.78872 0.94129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.37 -4.78 10.24 -55.14 -0.56 -5.34 16 3 C 0.04 0.46 6.42 36.01 0.23 0.69 16 4 C 0.51 7.55 7.91 -10.99 -0.09 7.46 16 5 O -0.51 -10.80 16.50 -14.35 -0.24 -11.03 16 6 N -0.73 -8.88 5.56 -60.29 -0.33 -9.21 16 7 C 0.14 2.17 4.96 -4.04 -0.02 2.15 16 8 C -0.14 -1.86 4.23 -27.89 -0.12 -1.98 16 9 C 0.48 8.40 7.08 -10.99 -0.08 8.32 16 10 O -0.44 -10.20 9.81 5.56 0.05 -10.14 16 11 N -0.62 -9.24 2.97 -165.22 -0.49 -9.73 16 12 C 0.11 1.15 6.32 -3.71 -0.02 1.12 16 13 C -0.13 -1.18 6.08 -26.61 -0.16 -1.34 16 14 C -0.11 -1.11 5.17 -26.69 -0.14 -1.25 16 15 C -0.10 -1.25 2.34 -90.50 -0.21 -1.46 16 16 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 17 C -0.15 -1.76 8.98 37.16 0.33 -1.43 16 18 C 0.15 2.44 2.39 -67.60 -0.16 2.28 16 19 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 20 C 0.16 3.42 4.80 -4.04 -0.02 3.40 16 21 N -0.70 -18.63 3.24 -59.91 -0.19 -18.82 16 22 C -0.21 -6.22 9.73 -15.06 -0.15 -6.37 16 23 H 0.06 1.91 7.83 -52.49 -0.41 1.50 16 24 C -0.02 -0.60 5.50 -17.43 -0.10 -0.70 16 25 N -0.94 -30.14 13.06 55.49 0.72 -29.42 16 26 Si 0.90 24.55 29.55 -169.99 -5.02 19.52 16 27 H -0.29 -8.14 7.11 56.52 0.40 -7.74 16 28 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16 29 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 30 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.40 2.96 8.47 -40.82 -0.35 2.61 16 36 H 0.09 1.84 8.10 -51.93 -0.42 1.42 16 37 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 38 H 0.08 0.80 7.44 -51.92 -0.39 0.41 16 39 H 0.09 1.01 8.13 -51.93 -0.42 0.59 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.63 5.96 -51.93 -0.31 0.32 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.90 6.43 -51.93 -0.33 0.56 16 49 H 0.02 0.36 6.25 -51.93 -0.32 0.03 16 50 H 0.04 0.94 6.29 -51.93 -0.33 0.62 16 51 H 0.38 10.69 7.07 -40.82 -0.29 10.40 16 52 H 0.25 7.82 8.31 -40.82 -0.34 7.48 16 LS Contribution 407.52 15.07 6.14 6.14 Total: -1.00 -40.30 407.52 -8.55 -48.85 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -9.04 Total: 6.95 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: 0.42 Total: 12.24 kcal Atomic # 7 Polarization: -66.88 SS G_CDS: -0.30 Total: -67.18 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.75 Total: -26.52 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.02 Total: 19.52 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -40.30 -8.55 -48.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496461445.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.131 kcal (2) G-P(sol) polarization free energy of solvation -40.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds