Wall clock time and date at job start Wed Apr 1 2020 00:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99908 * 2 1 4 4 C 1.50704 * 109.47369 * 180.02562 * 3 2 1 5 5 O 1.21272 * 119.99671 * 359.97438 * 4 3 2 6 6 N 1.34772 * 119.99839 * 180.02562 * 4 3 2 7 7 C 1.46506 * 120.00085 * 180.02562 * 6 4 3 8 8 C 1.52995 * 109.47398 * 179.97438 * 7 6 4 9 9 C 1.50695 * 109.47094 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00202 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00091 * 180.02562 * 9 8 7 12 12 C 1.46924 * 120.62927 * 5.93875 * 11 9 8 13 13 C 1.53194 * 108.77950 * 126.41662 * 12 11 9 14 14 C 1.53034 * 109.31218 * 54.62883 * 13 12 11 15 15 C 1.53043 * 109.54140 * 298.63790 * 14 13 12 16 16 H 1.08996 * 109.49852 * 301.41706 * 15 14 13 17 17 C 1.52996 * 109.49870 * 181.31720 * 15 14 13 18 18 C 1.46926 * 120.63175 * 185.95775 * 11 9 8 19 19 H 1.08999 * 109.58472 * 113.65740 * 18 11 9 20 20 C 1.53002 * 109.58683 * 353.37630 * 18 11 9 21 21 N 1.46496 * 109.47393 * 69.53525 * 20 18 11 22 22 C 1.36932 * 120.00048 * 174.76056 * 21 20 18 23 23 H 1.07998 * 119.99919 * 0.02562 * 22 21 20 24 24 C 1.38815 * 119.99850 * 179.97438 * 22 21 20 25 25 N 1.31613 * 120.00211 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99848 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46807 * 90.00152 * 26 24 22 28 28 H 1.48496 * 109.47356 * 209.99939 * 26 24 22 29 29 H 1.48496 * 109.47277 * 330.00761 * 26 24 22 30 30 H 1.08994 * 109.47399 * 299.99919 * 1 2 3 31 31 H 1.08996 * 109.47091 * 60.00498 * 1 2 3 32 32 H 1.09001 * 109.46859 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47562 * 59.99584 * 3 2 1 34 34 H 1.09002 * 109.47129 * 300.00359 * 3 2 1 35 35 H 0.97000 * 120.00311 * 359.97438 * 6 4 3 36 36 H 1.09003 * 109.46855 * 59.99439 * 7 6 4 37 37 H 1.09003 * 109.46508 * 300.00095 * 7 6 4 38 38 H 1.09008 * 109.46883 * 59.99785 * 8 7 6 39 39 H 1.09002 * 109.47466 * 300.00270 * 8 7 6 40 40 H 1.09003 * 109.58320 * 246.20070 * 12 11 9 41 41 H 1.08999 * 109.58676 * 6.48117 * 12 11 9 42 42 H 1.09002 * 109.49950 * 174.58498 * 13 12 11 43 43 H 1.08999 * 109.49338 * 294.68113 * 13 12 11 44 44 H 1.09002 * 109.46153 * 58.66327 * 14 13 12 45 45 H 1.09003 * 109.46136 * 178.63374 * 14 13 12 46 46 H 1.09000 * 109.47220 * 300.16232 * 17 15 14 47 47 H 1.09003 * 109.47162 * 60.16065 * 17 15 14 48 48 H 1.09000 * 109.47452 * 180.16305 * 17 15 14 49 49 H 1.09002 * 109.46843 * 189.54052 * 20 18 11 50 50 H 1.09000 * 109.46760 * 309.53731 * 20 18 11 51 51 H 0.96998 * 119.99585 * 354.76723 * 21 20 18 52 52 H 0.97004 * 120.00345 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 8 4.0341 0.0917 -0.0006 6 7 4.2764 2.2969 -0.0002 7 6 5.7368 2.1814 -0.0014 8 6 6.3591 3.5791 -0.0013 9 6 7.8613 3.4602 -0.0019 10 8 8.3830 2.3653 -0.0019 11 7 8.6252 4.5706 -0.0013 12 6 8.0136 5.8999 0.1306 13 6 8.6875 6.6400 1.2903 14 6 10.2008 6.6640 1.0641 15 6 10.7361 5.2307 1.0296 16 1 10.4970 4.7304 1.9680 17 6 12.2536 5.2568 0.8362 18 6 10.0854 4.4747 -0.1331 19 1 10.3967 4.9174 -1.0793 20 6 10.5089 3.0051 -0.0904 21 7 10.0614 2.3322 -1.3124 22 6 10.4200 1.0320 -1.5485 23 1 11.0324 0.5024 -0.8338 24 6 9.9956 0.3943 -2.7061 25 7 9.2489 1.0395 -3.5770 26 14 10.4854 -1.3793 -3.0287 27 1 9.4633 -2.2881 -2.4500 28 1 10.5794 -1.6085 -4.4928 29 1 11.8026 -1.6514 -2.3993 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6885 1.8465 0.8899 34 1 1.6885 1.8464 -0.8900 35 1 3.8592 3.1727 0.0001 36 1 6.0578 1.6412 -0.8921 37 1 6.0591 1.6397 0.8879 38 1 6.0380 4.1197 0.8892 39 1 6.0367 4.1205 -0.8908 40 1 8.1562 6.4610 -0.7930 41 1 6.9477 5.7933 0.3325 42 1 8.3105 7.6616 1.3381 43 1 8.4677 6.1264 2.2263 44 1 10.4185 7.1559 0.1160 45 1 10.6807 7.2112 1.8756 46 1 12.4918 5.7585 -0.1017 47 1 12.7161 5.7948 1.6637 48 1 12.6340 4.2357 0.8088 49 1 11.5946 2.9419 -0.0175 50 1 10.0578 2.5221 0.7763 51 1 9.5112 2.8079 -1.9542 52 1 8.9525 0.5940 -4.3861 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496461445.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:18 Heat of formation + Delta-G solvation = -99.809256 kcal Electronic energy + Delta-G solvation = -31485.738183 eV Core-core repulsion = 27293.021960 eV Total energy + Delta-G solvation = -4192.716224 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.58254 -40.81210 -38.68874 -38.35791 -36.67010 -36.00830 -34.76209 -33.64292 -32.27414 -31.84806 -29.72569 -28.39242 -27.03081 -26.86526 -25.80349 -24.51136 -23.65851 -22.19310 -21.91815 -21.16115 -19.91013 -19.09637 -18.33832 -17.96712 -17.44499 -17.39213 -16.85140 -16.72179 -16.58102 -16.26851 -15.87229 -15.49786 -15.47377 -15.36266 -15.04477 -14.83032 -14.51719 -14.25980 -14.11467 -13.98863 -13.71432 -13.67438 -13.33375 -13.14869 -12.96130 -12.89206 -12.84583 -12.73497 -12.43205 -12.41658 -12.34288 -12.11243 -11.88481 -11.83816 -11.59143 -11.44433 -11.06782 -10.99503 -10.88157 -10.75981 -10.22099 -9.78905 -9.38573 -8.61740 -7.86537 -5.03532 1.37931 1.44337 1.49009 1.53336 1.70767 2.02165 2.29897 2.59294 3.14280 3.47783 3.62657 3.75721 3.78052 3.81617 3.97777 4.03926 4.10282 4.18870 4.20712 4.29614 4.33835 4.38712 4.45033 4.50456 4.54295 4.59024 4.62799 4.69611 4.83932 4.86992 4.87391 4.89680 4.92154 4.97748 5.00455 5.09283 5.17470 5.28664 5.31721 5.32473 5.37626 5.43350 5.50815 5.59983 5.90143 6.06257 6.35735 6.54631 6.73610 7.24608 7.42315 7.63671 8.23810 8.45913 9.38058 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007688 B = 0.003759 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3641.179090 B = 7446.819590 C =10643.723780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.053 3.947 4 C 0.496 3.504 5 O -0.587 6.587 6 N -0.704 5.704 7 C 0.148 3.852 8 C -0.126 4.126 9 C 0.470 3.530 10 O -0.514 6.514 11 N -0.614 5.614 12 C 0.101 3.899 13 C -0.128 4.128 14 C -0.109 4.109 15 C -0.090 4.090 16 H 0.063 0.937 17 C -0.145 4.145 18 C 0.154 3.846 19 H 0.056 0.944 20 C 0.163 3.837 21 N -0.702 5.702 22 C -0.207 4.207 23 H 0.057 0.943 24 C -0.081 4.081 25 N -0.970 5.970 26 Si 0.958 3.042 27 H -0.304 1.304 28 H -0.291 1.291 29 H -0.269 1.269 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.122 0.878 34 H 0.114 0.886 35 H 0.425 0.575 36 H 0.024 0.976 37 H 0.044 0.956 38 H 0.138 0.862 39 H 0.118 0.882 40 H 0.071 0.929 41 H 0.110 0.890 42 H 0.104 0.896 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.082 0.918 46 H 0.057 0.943 47 H 0.077 0.923 48 H 0.041 0.959 49 H 0.012 0.988 50 H 0.019 0.981 51 H 0.367 0.633 52 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.739 20.885 12.510 28.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C -0.026 4.026 4 C 0.284 3.716 5 O -0.466 6.466 6 N -0.360 5.360 7 C 0.023 3.977 8 C -0.166 4.166 9 C 0.256 3.744 10 O -0.387 6.387 11 N -0.351 5.351 12 C -0.020 4.020 13 C -0.166 4.166 14 C -0.147 4.147 15 C -0.110 4.110 16 H 0.082 0.918 17 C -0.203 4.203 18 C 0.050 3.950 19 H 0.074 0.926 20 C 0.037 3.963 21 N -0.343 5.343 22 C -0.340 4.340 23 H 0.076 0.924 24 C -0.272 4.272 25 N -0.623 5.623 26 Si 0.789 3.211 27 H -0.232 1.232 28 H -0.217 1.217 29 H -0.194 1.194 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.139 0.861 34 H 0.132 0.868 35 H 0.264 0.736 36 H 0.043 0.957 37 H 0.063 0.937 38 H 0.156 0.844 39 H 0.136 0.864 40 H 0.089 0.911 41 H 0.128 0.872 42 H 0.122 0.878 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.101 0.899 46 H 0.076 0.924 47 H 0.096 0.904 48 H 0.060 0.940 49 H 0.030 0.970 50 H 0.036 0.964 51 H 0.198 0.802 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -13.883 19.175 12.566 26.802 hybrid contribution 0.016 -1.104 -0.866 1.403 sum -13.868 18.071 11.700 25.608 Atomic orbital electron populations 1.23039 0.78048 1.04062 1.01910 1.87994 1.22432 1.27166 1.95848 1.22379 0.87581 0.86725 1.05956 1.21337 0.90943 0.83938 0.75427 1.90772 1.76182 1.29409 1.50270 1.45562 1.05781 1.09484 1.75138 1.20637 0.79303 0.97339 1.00412 1.21691 0.91173 0.96666 1.07075 1.21011 0.90248 0.84563 0.78578 1.91137 1.73525 1.28324 1.45675 1.48016 1.05840 1.06935 1.74277 1.22027 0.98971 0.81525 0.99496 1.21909 0.95049 1.01746 0.97859 1.21571 0.96163 0.94019 1.02912 1.21405 0.95655 0.97170 0.96781 0.91839 1.21833 0.94350 1.01571 1.02532 1.21319 0.80369 0.95072 0.98223 0.92596 1.20968 0.94373 0.90825 0.90139 1.42253 1.60705 1.10647 1.20673 1.19422 1.22748 0.90562 1.01261 0.92450 1.25259 1.02387 1.01417 0.98184 1.69778 1.43234 1.37232 1.12082 0.85336 0.77687 0.81540 0.76550 1.23235 1.21718 1.19406 0.91641 0.92054 0.89214 0.86084 0.86823 0.73637 0.95712 0.93704 0.84423 0.86407 0.91093 0.87205 0.87798 0.91811 0.91474 0.89934 0.92392 0.90384 0.94034 0.97018 0.96358 0.80155 0.94804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 11.01 113.37 1.25 1.59 16 2 O -0.42 -10.51 10.24 -129.94 -1.33 -11.84 16 3 C 0.05 0.95 6.42 71.24 0.46 1.41 16 4 C 0.50 14.85 7.91 87.66 0.69 15.54 16 5 O -0.59 -26.70 16.50 16.03 0.26 -26.44 16 6 N -0.70 -16.38 5.56 -463.06 -2.57 -18.95 16 7 C 0.15 4.95 4.96 86.38 0.43 5.37 16 8 C -0.13 -3.02 4.23 29.84 0.13 -2.89 16 9 C 0.47 16.68 7.08 87.66 0.62 17.30 16 10 O -0.51 -25.52 9.81 -3.03 -0.03 -25.55 16 11 N -0.61 -17.65 2.97 -795.03 -2.36 -20.01 16 12 C 0.10 1.65 6.32 86.36 0.55 2.19 16 13 C -0.13 -1.61 6.08 30.67 0.19 -1.43 16 14 C -0.11 -1.73 5.17 30.62 0.16 -1.57 16 15 C -0.09 -2.16 2.34 -10.72 -0.03 -2.19 16 16 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 17 C -0.15 -3.34 8.98 71.98 0.65 -2.70 16 18 C 0.15 5.09 2.39 44.97 0.11 5.20 16 19 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 20 C 0.16 7.41 4.80 86.38 0.41 7.83 16 21 N -0.70 -39.69 3.24 -343.46 -1.11 -40.80 16 22 C -0.21 -13.12 9.73 84.03 0.82 -12.30 16 23 H 0.06 3.62 7.83 -2.91 -0.02 3.60 16 24 C -0.08 -5.26 5.50 84.86 0.47 -4.79 16 25 N -0.97 -65.16 13.06 21.65 0.28 -64.87 16 26 Si 0.96 52.77 29.55 68.60 2.03 54.79 16 27 H -0.30 -17.18 7.11 99.48 0.71 -16.48 16 28 H -0.29 -15.67 7.11 99.48 0.71 -14.96 16 29 H -0.27 -13.93 7.11 99.48 0.71 -13.22 16 30 H 0.07 0.58 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.42 4.75 8.47 -92.71 -0.79 3.96 16 36 H 0.02 1.13 8.10 -2.39 -0.02 1.12 16 37 H 0.04 1.76 8.10 -2.39 -0.02 1.74 16 38 H 0.14 1.90 7.44 -2.38 -0.02 1.89 16 39 H 0.12 2.25 8.13 -2.39 -0.02 2.23 16 40 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.11 1.11 5.96 -2.39 -0.01 1.10 16 42 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 44 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.04 1.14 6.43 -2.39 -0.02 1.13 16 49 H 0.01 0.55 6.25 -2.39 -0.01 0.54 16 50 H 0.02 0.94 6.29 -2.39 -0.02 0.92 16 51 H 0.37 21.92 7.07 -92.71 -0.66 21.27 16 52 H 0.24 15.95 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -101.03 407.52 1.54 -99.49 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: -0.52 Total: 25.62 kcal Atomic # 6 Polarization: 21.68 SS G_CDS: 6.89 Total: 28.57 kcal Atomic # 7 Polarization: -138.88 SS G_CDS: -5.77 Total: -144.64 kcal Atomic # 8 Polarization: -62.74 SS G_CDS: -1.10 Total: -63.83 kcal Atomic # 14 Polarization: 52.77 SS G_CDS: 2.03 Total: 54.79 kcal Total: -101.03 1.54 -99.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496461445.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.317 kcal (2) G-P(sol) polarization free energy of solvation -101.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds