Wall clock time and date at job start Wed Apr 1 2020 00:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42894 * 113.99819 * 2 1 4 4 C 1.50704 * 109.46867 * 180.02562 * 3 2 1 5 5 O 1.21280 * 120.00108 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99779 * 179.72634 * 4 3 2 7 7 C 1.46507 * 119.99719 * 179.97438 * 6 4 3 8 8 C 1.53003 * 109.46747 * 179.97438 * 7 6 4 9 9 C 1.50704 * 109.46808 * 180.02562 * 8 7 6 10 10 O 1.21279 * 119.99869 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99779 * 180.02562 * 9 8 7 12 12 C 1.46920 * 120.63243 * 354.92135 * 11 9 8 13 13 C 1.53189 * 108.77640 * 233.58946 * 12 11 9 14 14 C 1.53041 * 109.31276 * 305.36189 * 13 12 11 15 15 C 1.53048 * 109.53444 * 61.36513 * 14 13 12 16 16 H 1.09001 * 109.49368 * 178.68298 * 15 14 13 17 17 C 1.53005 * 109.49846 * 58.62245 * 15 14 13 18 18 C 1.46927 * 120.62823 * 174.64495 * 11 9 8 19 19 H 1.09001 * 109.58397 * 246.19762 * 18 11 9 20 20 C 1.53001 * 109.58797 * 6.62448 * 18 11 9 21 21 N 1.46493 * 109.47140 * 180.92778 * 20 18 11 22 22 C 1.36942 * 120.00163 * 185.45796 * 21 20 18 23 23 H 1.07999 * 119.99744 * 0.02562 * 22 21 20 24 24 C 1.38807 * 120.00117 * 180.02562 * 22 21 20 25 25 N 1.31620 * 120.00232 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 119.99822 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47198 * 59.99833 * 26 24 22 28 28 H 1.48500 * 109.47045 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47000 * 299.99586 * 26 24 22 30 30 H 1.09001 * 109.46723 * 60.00390 * 1 2 3 31 31 H 1.08995 * 109.46978 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47002 * 300.00220 * 1 2 3 33 33 H 1.08999 * 109.47211 * 60.00051 * 3 2 1 34 34 H 1.09002 * 109.47490 * 299.99871 * 3 2 1 35 35 H 0.97002 * 120.00340 * 359.97438 * 6 4 3 36 36 H 1.08993 * 109.47300 * 300.00036 * 7 6 4 37 37 H 1.08995 * 109.46779 * 60.00008 * 7 6 4 38 38 H 1.09001 * 109.47160 * 299.99927 * 8 7 6 39 39 H 1.08999 * 109.47089 * 60.00099 * 8 7 6 40 40 H 1.09003 * 109.58955 * 353.37346 * 12 11 9 41 41 H 1.09000 * 109.59119 * 113.79693 * 12 11 9 42 42 H 1.09005 * 109.50199 * 65.31313 * 13 12 11 43 43 H 1.08999 * 109.50200 * 185.41458 * 13 12 11 44 44 H 1.09001 * 109.46118 * 181.38293 * 14 13 12 45 45 H 1.08998 * 109.45985 * 301.34796 * 14 13 12 46 46 H 1.08999 * 109.47107 * 59.99765 * 17 15 14 47 47 H 1.08990 * 109.46842 * 180.02562 * 17 15 14 48 48 H 1.09003 * 109.46707 * 300.00234 * 17 15 14 49 49 H 1.09004 * 109.46659 * 300.92737 * 20 18 11 50 50 H 1.08996 * 109.47207 * 60.92403 * 20 18 11 51 51 H 0.97006 * 120.00213 * 5.46271 * 21 20 18 52 52 H 0.96998 * 120.00203 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 8 4.0342 0.0915 -0.0006 6 7 4.2765 2.2968 -0.0063 7 6 5.7370 2.1811 -0.0064 8 6 6.3592 3.5788 -0.0140 9 6 7.8616 3.4598 -0.0147 10 8 8.3831 2.3649 -0.0091 11 7 8.6255 4.5702 -0.0205 12 6 8.0123 5.9001 -0.1381 13 6 8.6705 6.6452 -1.3035 14 6 10.1868 6.6683 -1.0976 15 6 10.7223 5.2347 -1.0768 16 1 11.8052 5.2527 -0.9536 17 6 10.3696 4.5387 -2.3930 18 6 10.0869 4.4739 0.0967 19 1 10.4078 4.9169 1.0395 20 6 10.5098 3.0044 0.0469 21 7 11.9651 2.9100 0.1862 22 6 12.5880 1.6972 0.0589 23 1 12.0063 0.8102 -0.1447 24 6 13.9668 1.6077 0.1914 25 7 14.6757 2.6887 0.4390 26 14 14.8165 -0.0467 0.0169 27 1 14.5493 -0.6003 -1.3349 28 1 16.2799 0.1267 0.1999 29 1 14.2957 -0.9816 1.0465 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.6886 1.8463 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.8594 3.1725 -0.0104 36 1 6.0590 1.6445 0.8860 37 1 6.0582 1.6359 -0.8938 38 1 6.0372 4.1150 -0.9067 39 1 6.0380 4.1244 0.8732 40 1 6.9442 5.7945 -0.3286 41 1 8.1673 6.4570 0.7859 42 1 8.4381 6.1359 -2.2388 43 1 8.2931 7.6671 -1.3416 44 1 10.6557 7.2193 -1.9130 45 1 10.4173 7.1558 -0.1504 46 1 10.8197 5.0824 -3.2235 47 1 10.7508 3.5177 -2.3774 48 1 9.2866 4.5201 -2.5152 49 1 10.0308 2.4607 0.8613 50 1 10.2072 2.5713 -0.9065 51 1 12.4875 3.7067 0.3688 52 1 15.6392 2.6263 0.5312 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496461447.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:22 Heat of formation + Delta-G solvation = -118.322207 kcal Electronic energy + Delta-G solvation = -30836.397135 eV Core-core repulsion = 26642.878130 eV Total energy + Delta-G solvation = -4193.519006 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.80897 -40.81218 -38.94373 -38.39575 -36.70112 -36.19722 -34.64152 -33.76961 -32.28297 -31.73177 -29.74913 -28.48957 -27.26493 -26.87496 -25.81416 -24.71138 -24.23195 -22.37924 -21.90033 -20.95772 -19.51836 -19.04216 -18.36419 -18.08619 -17.56064 -17.41007 -17.09280 -16.66345 -16.52682 -16.17190 -16.14475 -15.81468 -15.46780 -15.26810 -15.23207 -14.88358 -14.75132 -14.59575 -14.23773 -14.02940 -13.89214 -13.52552 -13.28516 -13.12838 -13.09201 -12.91310 -12.79232 -12.65282 -12.42931 -12.36639 -12.33101 -12.12730 -11.99054 -11.93177 -11.75456 -11.32519 -11.18629 -10.97938 -10.93993 -10.74131 -10.20309 -10.12370 -9.49659 -8.92046 -7.96582 -5.23134 1.41135 1.45004 1.51400 1.54826 1.65997 1.70821 2.14667 2.55104 3.14644 3.35681 3.54155 3.66984 3.81195 3.86861 3.93431 3.99712 4.07516 4.15015 4.20386 4.22924 4.27733 4.32156 4.42770 4.51039 4.51946 4.59100 4.60586 4.68391 4.74865 4.81856 4.84430 4.89824 4.93688 4.94327 4.99129 5.09700 5.17903 5.24213 5.31740 5.33320 5.39436 5.42715 5.45827 5.59928 5.75983 6.07464 6.26602 6.52367 6.58929 7.24332 7.30547 7.32730 8.09291 8.35571 9.26557 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010626 B = 0.002549 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.409647 B =10982.798523 C =13247.564865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.049 3.951 4 C 0.500 3.500 5 O -0.585 6.585 6 N -0.705 5.705 7 C 0.140 3.860 8 C -0.130 4.130 9 C 0.496 3.504 10 O -0.575 6.575 11 N -0.600 5.600 12 C 0.100 3.900 13 C -0.131 4.131 14 C -0.111 4.111 15 C -0.095 4.095 16 H 0.052 0.948 17 C -0.131 4.131 18 C 0.153 3.847 19 H 0.064 0.936 20 C 0.174 3.826 21 N -0.742 5.742 22 C -0.239 4.239 23 H 0.057 0.943 24 C -0.072 4.072 25 N -0.965 5.965 26 Si 0.970 3.030 27 H -0.281 1.281 28 H -0.286 1.286 29 H -0.283 1.283 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.426 0.574 36 H 0.043 0.957 37 H 0.045 0.955 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.126 0.874 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.108 0.892 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.059 0.941 47 H 0.021 0.979 48 H 0.065 0.935 49 H 0.012 0.988 50 H 0.022 0.978 51 H 0.372 0.628 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.253 15.944 -2.833 36.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C -0.030 4.030 4 C 0.287 3.713 5 O -0.464 6.464 6 N -0.361 5.361 7 C 0.015 3.985 8 C -0.169 4.169 9 C 0.285 3.715 10 O -0.454 6.454 11 N -0.333 5.333 12 C -0.021 4.021 13 C -0.169 4.169 14 C -0.148 4.148 15 C -0.114 4.114 16 H 0.070 0.930 17 C -0.188 4.188 18 C 0.049 3.951 19 H 0.082 0.918 20 C 0.049 3.951 21 N -0.387 5.387 22 C -0.371 4.371 23 H 0.075 0.925 24 C -0.265 4.265 25 N -0.616 5.616 26 Si 0.799 3.201 27 H -0.208 1.208 28 H -0.212 1.212 29 H -0.209 1.209 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.081 0.919 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.265 0.735 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.159 0.841 39 H 0.157 0.843 40 H 0.144 0.856 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.126 0.874 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.078 0.922 47 H 0.040 0.960 48 H 0.084 0.916 49 H 0.030 0.970 50 H 0.040 0.960 51 H 0.204 0.796 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -31.543 14.266 -2.860 34.737 hybrid contribution 1.326 -0.708 0.109 1.507 sum -30.217 13.558 -2.751 33.234 Atomic orbital electron populations 1.23027 0.78144 1.04014 1.01859 1.87985 1.22303 1.27258 1.95849 1.22408 0.88022 0.86681 1.05919 1.21210 0.90717 0.83975 0.75377 1.90767 1.76070 1.29308 1.50285 1.45556 1.05810 1.09506 1.75200 1.20763 0.79329 0.97094 1.01318 1.21800 0.89107 0.97553 1.08472 1.21261 0.90787 0.83608 0.75813 1.90889 1.74733 1.29152 1.50627 1.48195 1.05251 1.07750 1.72135 1.22194 0.99305 0.80757 0.99824 1.21974 0.94090 1.02249 0.98567 1.21556 0.97188 0.93478 1.02619 1.21427 0.99151 0.96511 0.94355 0.92995 1.21698 1.01275 0.99125 0.96690 1.21297 0.80415 0.95483 0.97951 0.91784 1.21181 0.82161 0.93644 0.98131 1.42678 1.02898 1.06790 1.86351 1.19408 0.90499 0.87827 1.39369 0.92487 1.25467 0.96766 1.00636 1.03599 1.69785 1.05604 1.28482 1.57742 0.85268 0.77289 0.79624 0.77940 1.20777 1.21159 1.20934 0.91911 0.89299 0.91934 0.86603 0.86544 0.73507 0.93822 0.93691 0.84145 0.84293 0.85625 0.89777 0.91380 0.87378 0.91054 0.91327 0.92236 0.95999 0.91629 0.96995 0.95996 0.79605 0.93909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.48 16 2 O -0.41 -8.06 10.24 -129.94 -1.33 -9.39 16 3 C 0.05 0.55 6.42 71.24 0.46 1.01 16 4 C 0.50 10.60 7.91 87.66 0.69 11.29 16 5 O -0.59 -21.02 16.50 16.01 0.26 -20.76 16 6 N -0.70 -9.56 5.56 -463.05 -2.57 -12.14 16 7 C 0.14 3.02 4.96 86.38 0.43 3.45 16 8 C -0.13 -1.72 4.21 29.85 0.13 -1.60 16 9 C 0.50 13.44 7.61 87.66 0.67 14.11 16 10 O -0.58 -23.49 11.39 -3.03 -0.03 -23.53 16 11 N -0.60 -14.49 2.40 -794.24 -1.91 -16.40 16 12 C 0.10 1.16 6.32 86.36 0.55 1.70 16 13 C -0.13 -1.60 5.74 30.67 0.18 -1.42 16 14 C -0.11 -2.21 5.43 30.62 0.17 -2.05 16 15 C -0.09 -2.97 2.58 -10.57 -0.03 -3.00 16 16 H 0.05 2.01 7.28 -2.39 -0.02 2.00 16 17 C -0.13 -4.21 8.21 71.98 0.59 -3.62 16 18 C 0.15 5.26 2.75 45.12 0.12 5.39 16 19 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 20 C 0.17 8.35 3.66 86.38 0.32 8.67 16 21 N -0.74 -42.00 5.29 -343.47 -1.82 -43.82 16 22 C -0.24 -14.97 9.99 84.03 0.84 -14.13 16 23 H 0.06 3.63 7.83 -2.91 -0.02 3.61 16 24 C -0.07 -4.49 5.50 84.86 0.47 -4.03 16 25 N -0.97 -61.80 13.06 21.65 0.28 -61.51 16 26 Si 0.97 50.20 29.55 68.60 2.03 52.22 16 27 H -0.28 -14.20 7.11 99.48 0.71 -13.49 16 28 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 29 H -0.28 -14.37 7.11 99.48 0.71 -13.66 16 30 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.43 0.96 8.47 -92.71 -0.79 0.17 16 36 H 0.04 1.27 8.10 -2.39 -0.02 1.25 16 37 H 0.04 1.29 8.10 -2.39 -0.02 1.27 16 38 H 0.14 0.73 7.48 -2.39 -0.02 0.71 16 39 H 0.14 0.81 8.11 -2.39 -0.02 0.79 16 40 H 0.13 0.38 5.96 -2.39 -0.01 0.37 16 41 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.07 0.92 6.34 -2.38 -0.02 0.90 16 43 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.02 0.89 6.36 -2.39 -0.02 0.88 16 48 H 0.06 1.81 5.98 -2.39 -0.01 1.80 16 49 H 0.01 0.66 6.37 -2.38 -0.02 0.64 16 50 H 0.02 1.15 5.25 -2.39 -0.01 1.14 16 51 H 0.37 21.48 6.88 -92.70 -0.64 20.85 16 52 H 0.25 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -98.78 403.97 1.24 -97.54 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -0.49 Total: 20.52 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: 6.82 Total: 17.25 kcal Atomic # 7 Polarization: -127.85 SS G_CDS: -6.01 Total: -133.86 kcal Atomic # 8 Polarization: -52.57 SS G_CDS: -1.10 Total: -53.67 kcal Atomic # 14 Polarization: 50.20 SS G_CDS: 2.03 Total: 52.22 kcal Total: -98.78 1.24 -97.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496461447.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.786 kcal (2) G-P(sol) polarization free energy of solvation -98.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds