Wall clock time and date at job start Wed Apr 1 2020 00:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47007 * 2 1 4 4 O 1.42900 * 109.47173 * 119.99869 * 2 1 3 5 5 C 1.42898 * 114.00224 * 149.99819 * 4 2 1 6 6 C 1.50697 * 109.46959 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00589 * 0.02562 * 6 5 4 8 8 N 1.34787 * 119.99510 * 180.02562 * 6 5 4 9 9 C 1.46497 * 119.99622 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.57685 * 300.15990 * 9 8 6 11 11 C 1.53118 * 109.52172 * 179.97438 * 9 8 6 12 12 C 1.53036 * 109.28068 * 297.74897 * 11 9 8 13 13 N 1.46843 * 109.52229 * 300.82162 * 12 11 9 14 14 C 1.46902 * 110.99818 * 185.83572 * 13 12 11 15 15 C 1.50702 * 109.47027 * 169.99758 * 14 13 12 16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72353 * 15 14 13 18 18 C 1.37101 * 120.00327 * 180.27606 * 17 15 14 19 19 H 1.08001 * 119.99426 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00412 * 180.02562 * 18 17 15 21 21 N 1.31414 * 120.00005 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00057 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47191 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46534 * 120.00189 * 22 20 18 25 25 H 1.48498 * 109.47283 * 240.00132 * 22 20 18 26 26 C 1.46843 * 111.20082 * 61.74351 * 13 12 11 27 27 C 1.53038 * 109.52070 * 298.25410 * 26 13 12 28 28 H 1.08995 * 109.47172 * 300.00325 * 1 2 3 29 29 H 1.08999 * 109.47033 * 60.00145 * 1 2 3 30 30 H 1.09000 * 109.46796 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47172 * 239.99675 * 2 1 3 32 32 H 1.09001 * 109.46748 * 59.99803 * 3 2 1 33 33 H 1.09004 * 109.46802 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47106 * 299.99810 * 3 2 1 35 35 H 1.09005 * 109.46981 * 60.00159 * 5 4 2 36 36 H 1.09002 * 109.47206 * 300.00474 * 5 4 2 37 37 H 0.97000 * 119.99783 * 359.97438 * 8 6 5 38 38 H 1.09004 * 109.46761 * 299.84173 * 10 9 8 39 39 H 1.08996 * 109.47405 * 59.83910 * 10 9 8 40 40 H 1.08998 * 109.47484 * 179.84685 * 10 9 8 41 41 H 1.08995 * 109.50555 * 177.80779 * 11 9 8 42 42 H 1.08997 * 109.53676 * 57.71198 * 11 9 8 43 43 H 1.08996 * 109.46465 * 180.80442 * 12 11 9 44 44 H 1.09001 * 109.45935 * 60.83442 * 12 11 9 45 45 H 1.09004 * 109.47131 * 50.00001 * 14 13 12 46 46 H 1.09000 * 109.47732 * 290.00112 * 14 13 12 47 47 H 0.97000 * 120.00317 * 0.28382 * 17 15 14 48 48 H 0.96996 * 120.00330 * 179.97438 * 21 20 18 49 49 H 1.08997 * 109.46379 * 58.26863 * 26 13 12 50 50 H 1.09000 * 109.46577 * 178.24622 * 26 13 12 51 51 H 1.09001 * 109.50668 * 299.24264 * 27 26 13 52 52 H 1.09001 * 109.53577 * 179.13941 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2660 -1.3245 0.9887 6 6 3.6698 -1.9977 2.2750 7 8 2.9497 -1.9275 3.2483 8 7 4.8315 -2.6779 2.3438 9 6 5.2238 -3.3329 3.5941 10 6 5.3394 -2.2881 4.7057 11 6 6.5735 -4.0306 3.4045 12 6 6.4354 -5.1159 2.3345 13 7 5.4159 -6.0877 2.7498 14 6 5.3538 -7.2181 1.8137 15 6 4.4836 -8.3033 2.3936 16 8 3.9657 -8.1499 3.4796 17 7 4.2760 -9.4417 1.7027 18 6 3.4798 -10.4267 2.2277 19 1 3.0186 -10.2901 3.1947 20 6 3.2661 -11.6006 1.5157 21 7 3.8276 -11.7670 0.3393 22 14 2.1818 -12.9428 2.2314 23 1 1.6734 -12.5132 3.5589 24 1 1.0362 -13.1921 1.3200 25 1 2.9735 -14.1899 2.3840 26 6 4.1010 -5.4497 2.8922 27 6 4.1693 -4.3744 3.9790 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 4.0200 -0.5874 0.7125 36 1 3.1809 -2.0707 0.1987 37 1 5.4072 -2.7344 1.5652 38 1 6.0940 -1.5500 4.4336 39 1 4.3780 -1.7923 4.8398 40 1 5.6287 -2.7775 5.6357 41 1 6.8837 -4.4848 4.3455 42 1 7.3197 -3.3014 3.0891 43 1 7.3912 -5.6243 2.2073 44 1 6.1386 -4.6593 1.3903 45 1 6.3581 -7.6077 1.6474 46 1 4.9329 -6.8824 0.8659 47 1 4.6899 -9.5644 0.8341 48 1 3.6788 -12.5866 -0.1576 49 1 3.8152 -4.9914 1.9454 50 1 3.3612 -6.2003 3.1702 51 1 4.4417 -4.8339 4.9291 52 1 3.1975 -3.8901 4.0743 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499972455.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:30 Heat of formation + Delta-G solvation = -115.810504 kcal Electronic energy + Delta-G solvation = -31011.809069 eV Core-core repulsion = 26818.398979 eV Total energy + Delta-G solvation = -4193.410090 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.70764 -39.06220 -38.30638 -37.39482 -35.05689 -33.80621 -33.14799 -32.15128 -31.22059 -30.73875 -29.06182 -27.91987 -27.36965 -26.09988 -24.09666 -23.15060 -21.98990 -21.64509 -20.94409 -19.23081 -19.05882 -17.83772 -17.55434 -17.19518 -16.30558 -16.00072 -15.60827 -15.24067 -15.07784 -14.81541 -14.73312 -14.43372 -14.05489 -13.85998 -13.78036 -13.58883 -13.54247 -13.22839 -12.95040 -12.68671 -12.53223 -12.48293 -12.31527 -12.07379 -12.05687 -11.94420 -11.76006 -11.54058 -11.47078 -11.23036 -11.07807 -11.01013 -10.95537 -10.46377 -10.37166 -10.30801 -10.20402 -9.97951 -9.50670 -9.46309 -9.11269 -8.38147 -7.95243 -7.80034 -6.40158 -3.80601 2.52583 2.62651 3.17633 3.28125 3.35729 3.69492 3.92627 4.01630 4.26725 4.40738 4.56004 4.63377 4.73369 4.77756 4.81670 4.82811 4.92980 4.95091 5.06218 5.23546 5.25238 5.29640 5.35555 5.40383 5.43171 5.50623 5.53286 5.59255 5.67393 5.70657 5.80006 5.81481 5.88909 5.89308 5.90006 5.96195 6.04726 6.15763 6.24698 6.30945 6.45064 6.58564 6.63867 6.81763 7.33606 7.41537 7.48106 7.57406 8.08983 8.16079 8.64018 9.20470 9.56689 10.08764 10.77795 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011812 B = 0.002467 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.893846 B =11349.097024 C =12793.215361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.078 3.922 3 C -0.175 4.175 4 O -0.356 6.356 5 C 0.043 3.957 6 C 0.515 3.485 7 O -0.510 6.510 8 N -0.720 5.720 9 C 0.177 3.823 10 C -0.161 4.161 11 C -0.115 4.115 12 C 0.055 3.945 13 N -0.514 5.514 14 C 0.047 3.953 15 C 0.444 3.556 16 O -0.575 6.575 17 N -0.566 5.566 18 C -0.296 4.296 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.903 5.903 22 Si 0.928 3.072 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.059 3.941 27 C -0.122 4.122 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.396 0.604 38 H 0.051 0.949 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.090 0.910 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.025 0.975 45 H 0.087 0.913 46 H 0.044 0.956 47 H 0.391 0.609 48 H 0.270 0.730 49 H 0.017 0.983 50 H 0.102 0.898 51 H 0.080 0.920 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.536 24.205 -4.342 25.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.021 3.979 3 C -0.233 4.233 4 O -0.274 6.274 5 C -0.037 4.037 6 C 0.300 3.700 7 O -0.385 6.385 8 N -0.375 5.375 9 C 0.092 3.908 10 C -0.219 4.219 11 C -0.154 4.154 12 C -0.074 4.074 13 N -0.238 5.238 14 C -0.084 4.084 15 C 0.229 3.771 16 O -0.459 6.459 17 N -0.203 5.203 18 C -0.426 4.426 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.545 5.545 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.069 4.069 27 C -0.160 4.160 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.230 0.770 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.109 0.891 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.044 0.956 45 H 0.106 0.894 46 H 0.062 0.938 47 H 0.224 0.776 48 H 0.080 0.920 49 H 0.036 0.964 50 H 0.120 0.880 51 H 0.098 0.902 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.656 24.017 -2.373 24.409 hybrid contribution 0.119 -0.569 -1.929 2.015 sum 3.775 23.448 -4.303 24.136 Atomic orbital electron populations 1.21854 0.93192 1.03112 1.02573 1.22178 0.95471 0.92385 0.87899 1.22312 1.01378 0.96806 1.02790 1.88078 1.34552 1.69638 1.35122 1.22256 0.88213 0.97029 0.96248 1.20136 0.81277 0.78958 0.89607 1.90682 1.51440 1.59153 1.37188 1.46069 1.22031 1.54320 1.15034 1.20459 0.94930 0.92084 0.83366 1.22186 1.03238 0.98641 0.97831 1.21881 0.95175 0.96906 1.01390 1.22090 0.96465 0.93314 0.95516 1.61532 1.06639 1.07849 1.47809 1.21828 1.00827 0.92261 0.93529 1.19755 0.86083 0.84057 0.87163 1.90495 1.53436 1.80056 1.21874 1.41880 1.44299 1.14594 1.19515 1.19746 1.24055 0.94455 1.04297 0.87874 1.25251 0.98348 0.98725 0.95709 1.69619 1.44437 1.27842 1.12597 0.85812 0.79314 0.80185 0.79123 1.19206 1.20806 1.20769 1.22182 0.91487 0.96781 0.96422 1.21982 0.99724 0.94569 0.99775 0.91587 0.91163 0.91711 0.92070 0.91572 0.92601 0.91524 0.90692 0.90460 0.76995 0.93029 0.90399 0.91599 0.89145 0.91173 0.90565 0.95647 0.89439 0.93758 0.77565 0.91987 0.96438 0.87960 0.90186 0.89708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.56 37.16 0.36 -0.80 16 2 C 0.08 0.64 3.34 -26.73 -0.09 0.55 16 3 C -0.18 -1.17 9.53 37.16 0.35 -0.82 16 4 O -0.36 -4.14 9.52 -55.14 -0.52 -4.66 16 5 C 0.04 0.40 6.23 36.00 0.22 0.62 16 6 C 0.52 6.26 7.33 -10.98 -0.08 6.18 16 7 O -0.51 -8.33 12.71 -14.35 -0.18 -8.52 16 8 N -0.72 -7.26 4.16 -47.49 -0.20 -7.46 16 9 C 0.18 2.04 0.66 -131.70 -0.09 1.95 16 10 C -0.16 -1.79 8.41 37.16 0.31 -1.48 16 11 C -0.12 -1.17 4.93 -26.65 -0.13 -1.30 16 12 C 0.05 0.64 5.30 -3.84 -0.02 0.61 16 13 N -0.51 -8.38 4.40 -236.12 -1.04 -9.41 16 14 C 0.05 0.83 5.45 -4.97 -0.03 0.80 16 15 C 0.44 10.50 7.46 -10.98 -0.08 10.42 16 16 O -0.57 -15.55 13.90 5.55 0.08 -15.47 16 17 N -0.57 -14.38 5.29 -10.96 -0.06 -14.43 16 18 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 19 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 20 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 21 N -0.90 -24.66 13.05 55.50 0.72 -23.93 16 22 Si 0.93 21.24 29.55 -169.99 -5.02 16.22 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 C 0.06 1.00 4.96 -3.84 -0.02 0.98 16 27 C -0.12 -1.85 4.71 -26.65 -0.13 -1.97 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.41 7.79 -51.93 -0.40 0.01 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.34 7.87 -51.93 -0.41 -0.06 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.49 7.87 -51.93 -0.41 0.08 16 36 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 37 H 0.40 2.91 7.47 -40.82 -0.30 2.61 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 1.05 6.16 -51.93 -0.32 0.73 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.82 8.01 -51.93 -0.42 0.40 16 44 H 0.03 0.26 7.01 -51.93 -0.36 -0.10 16 45 H 0.09 1.38 7.99 -51.93 -0.41 0.97 16 46 H 0.04 0.72 8.12 -51.93 -0.42 0.30 16 47 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 48 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 49 H 0.02 0.29 7.69 -51.93 -0.40 -0.11 16 50 H 0.10 2.18 5.78 -51.93 -0.30 1.88 16 51 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 52 H 0.08 1.43 6.14 -51.93 -0.32 1.11 16 LS Contribution 407.72 15.07 6.14 6.14 Total: -1.00 -34.15 407.72 -8.70 -42.85 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -8.96 Total: 10.90 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: 0.34 Total: 7.79 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: -0.57 Total: -55.24 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.63 Total: -28.65 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.15 -8.70 -42.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499972455.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.965 kcal (2) G-P(sol) polarization free energy of solvation -34.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds