Wall clock time and date at job start Wed Apr 1 2020 00:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47007 * 2 1 4 4 O 1.42900 * 109.47173 * 119.99869 * 2 1 3 5 5 C 1.42898 * 114.00224 * 149.99819 * 4 2 1 6 6 C 1.50697 * 109.46959 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00589 * 0.02562 * 6 5 4 8 8 N 1.34787 * 119.99510 * 180.02562 * 6 5 4 9 9 C 1.46497 * 119.99622 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.57685 * 300.15990 * 9 8 6 11 11 C 1.53118 * 109.52172 * 179.97438 * 9 8 6 12 12 C 1.53036 * 109.28068 * 297.74897 * 11 9 8 13 13 N 1.46843 * 109.52229 * 300.82162 * 12 11 9 14 14 C 1.46902 * 110.99818 * 185.83572 * 13 12 11 15 15 C 1.50702 * 109.47027 * 169.99758 * 14 13 12 16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72353 * 15 14 13 18 18 C 1.37101 * 120.00327 * 180.27606 * 17 15 14 19 19 H 1.08001 * 119.99426 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00412 * 180.02562 * 18 17 15 21 21 N 1.31414 * 120.00005 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00057 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47191 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46534 * 120.00189 * 22 20 18 25 25 H 1.48498 * 109.47283 * 240.00132 * 22 20 18 26 26 C 1.46843 * 111.20082 * 61.74351 * 13 12 11 27 27 C 1.53038 * 109.52070 * 298.25410 * 26 13 12 28 28 H 1.08995 * 109.47172 * 300.00325 * 1 2 3 29 29 H 1.08999 * 109.47033 * 60.00145 * 1 2 3 30 30 H 1.09000 * 109.46796 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47172 * 239.99675 * 2 1 3 32 32 H 1.09001 * 109.46748 * 59.99803 * 3 2 1 33 33 H 1.09004 * 109.46802 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47106 * 299.99810 * 3 2 1 35 35 H 1.09005 * 109.46981 * 60.00159 * 5 4 2 36 36 H 1.09002 * 109.47206 * 300.00474 * 5 4 2 37 37 H 0.97000 * 119.99783 * 359.97438 * 8 6 5 38 38 H 1.09004 * 109.46761 * 299.84173 * 10 9 8 39 39 H 1.08996 * 109.47405 * 59.83910 * 10 9 8 40 40 H 1.08998 * 109.47484 * 179.84685 * 10 9 8 41 41 H 1.08995 * 109.50555 * 177.80779 * 11 9 8 42 42 H 1.08997 * 109.53676 * 57.71198 * 11 9 8 43 43 H 1.08996 * 109.46465 * 180.80442 * 12 11 9 44 44 H 1.09001 * 109.45935 * 60.83442 * 12 11 9 45 45 H 1.09004 * 109.47131 * 50.00001 * 14 13 12 46 46 H 1.09000 * 109.47732 * 290.00112 * 14 13 12 47 47 H 0.97000 * 120.00317 * 0.28382 * 17 15 14 48 48 H 0.96996 * 120.00330 * 179.97438 * 21 20 18 49 49 H 1.08997 * 109.46379 * 58.26863 * 26 13 12 50 50 H 1.09000 * 109.46577 * 178.24622 * 26 13 12 51 51 H 1.09001 * 109.50668 * 299.24264 * 27 26 13 52 52 H 1.09001 * 109.53577 * 179.13941 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2660 -1.3245 0.9887 6 6 3.6698 -1.9977 2.2750 7 8 2.9497 -1.9275 3.2483 8 7 4.8315 -2.6779 2.3438 9 6 5.2238 -3.3329 3.5941 10 6 5.3394 -2.2881 4.7057 11 6 6.5735 -4.0306 3.4045 12 6 6.4354 -5.1159 2.3345 13 7 5.4159 -6.0877 2.7498 14 6 5.3538 -7.2181 1.8137 15 6 4.4836 -8.3033 2.3936 16 8 3.9657 -8.1499 3.4796 17 7 4.2760 -9.4417 1.7027 18 6 3.4798 -10.4267 2.2277 19 1 3.0186 -10.2901 3.1947 20 6 3.2661 -11.6006 1.5157 21 7 3.8276 -11.7670 0.3393 22 14 2.1818 -12.9428 2.2314 23 1 1.6734 -12.5132 3.5589 24 1 1.0362 -13.1921 1.3200 25 1 2.9735 -14.1899 2.3840 26 6 4.1010 -5.4497 2.8922 27 6 4.1693 -4.3744 3.9790 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 4.0200 -0.5874 0.7125 36 1 3.1809 -2.0707 0.1987 37 1 5.4072 -2.7344 1.5652 38 1 6.0940 -1.5500 4.4336 39 1 4.3780 -1.7923 4.8398 40 1 5.6287 -2.7775 5.6357 41 1 6.8837 -4.4848 4.3455 42 1 7.3197 -3.3014 3.0891 43 1 7.3912 -5.6243 2.2073 44 1 6.1386 -4.6593 1.3903 45 1 6.3581 -7.6077 1.6474 46 1 4.9329 -6.8824 0.8659 47 1 4.6899 -9.5644 0.8341 48 1 3.6788 -12.5866 -0.1576 49 1 3.8152 -4.9914 1.9454 50 1 3.3612 -6.2003 3.1702 51 1 4.4417 -4.8339 4.9291 52 1 3.1975 -3.8901 4.0743 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499972455.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:29 Heat of formation + Delta-G solvation = -141.333132 kcal Electronic energy + Delta-G solvation = -31012.915813 eV Core-core repulsion = 26818.398979 eV Total energy + Delta-G solvation = -4194.516834 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.71129 -40.36655 -39.49324 -38.56858 -36.36289 -35.71489 -33.84674 -33.32010 -33.02260 -31.84273 -30.31466 -28.61300 -27.98579 -27.67434 -25.79793 -24.27444 -23.05694 -22.25970 -21.90518 -21.03047 -20.13942 -19.86352 -18.42112 -17.91605 -17.71314 -17.07601 -16.80479 -16.56489 -16.41968 -16.04536 -15.77777 -15.70008 -15.42915 -15.26450 -15.08086 -14.75811 -14.54198 -14.05058 -14.00079 -13.79463 -13.57445 -13.50524 -13.33038 -13.20437 -13.08236 -12.95622 -12.89154 -12.85717 -12.56432 -12.41203 -12.37382 -12.33772 -12.14266 -12.10282 -11.67543 -11.65062 -11.48011 -11.35923 -10.64750 -10.48757 -10.31469 -10.03443 -9.95496 -9.12915 -8.46894 -5.94904 1.35194 1.40261 1.54324 1.62703 1.85205 2.06788 2.28182 2.79489 3.01184 3.19970 3.39335 3.61567 3.81098 3.82474 3.95091 4.01685 4.08822 4.18371 4.21717 4.26917 4.28428 4.32105 4.34640 4.49758 4.52693 4.55527 4.63218 4.74200 4.78666 4.80871 4.81699 4.86351 4.90522 4.92291 4.98030 5.01332 5.12813 5.20804 5.27190 5.30213 5.32165 5.34764 5.41202 5.62315 5.91608 6.10423 6.17630 6.31187 6.61806 6.63873 7.14127 7.31437 7.57778 8.14712 8.70803 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011812 B = 0.002467 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.893846 B =11349.097024 C =12793.215361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.071 3.929 3 C -0.171 4.171 4 O -0.394 6.394 5 C 0.044 3.956 6 C 0.508 3.492 7 O -0.561 6.561 8 N -0.706 5.706 9 C 0.182 3.818 10 C -0.155 4.155 11 C -0.107 4.107 12 C 0.051 3.949 13 N -0.532 5.532 14 C 0.060 3.940 15 C 0.439 3.561 16 O -0.616 6.616 17 N -0.576 5.576 18 C -0.330 4.330 19 H 0.075 0.925 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.990 3.010 23 H -0.276 1.276 24 H -0.271 1.271 25 H -0.269 1.269 26 C 0.070 3.930 27 C -0.115 4.115 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.414 0.586 38 H 0.075 0.925 39 H 0.049 0.951 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.111 0.889 43 H 0.096 0.904 44 H 0.050 0.950 45 H 0.116 0.884 46 H 0.065 0.935 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.025 0.975 50 H 0.048 0.952 51 H 0.062 0.938 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.896 25.453 -6.640 27.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.014 3.986 3 C -0.228 4.228 4 O -0.313 6.313 5 C -0.035 4.035 6 C 0.294 3.706 7 O -0.439 6.439 8 N -0.361 5.361 9 C 0.096 3.904 10 C -0.213 4.213 11 C -0.145 4.145 12 C -0.076 4.076 13 N -0.257 5.257 14 C -0.071 4.071 15 C 0.226 3.774 16 O -0.502 6.502 17 N -0.213 5.213 18 C -0.459 4.459 19 H 0.093 0.907 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.814 3.186 23 H -0.201 1.201 24 H -0.196 1.196 25 H -0.194 1.194 26 C -0.058 4.058 27 C -0.154 4.154 28 H 0.071 0.929 29 H 0.112 0.888 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.127 0.873 36 H 0.115 0.885 37 H 0.252 0.748 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.130 0.870 43 H 0.114 0.886 44 H 0.068 0.932 45 H 0.134 0.866 46 H 0.083 0.917 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.043 0.957 50 H 0.067 0.933 51 H 0.080 0.920 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.069 25.277 -4.730 26.422 hybrid contribution -0.636 -0.922 -1.194 1.637 sum 5.432 24.355 -5.924 25.646 Atomic orbital electron populations 1.21900 0.93519 1.02365 1.03099 1.22402 0.95389 0.93225 0.87552 1.22280 1.01854 0.95728 1.02979 1.88043 1.35766 1.70323 1.37177 1.22380 0.88379 0.98122 0.94659 1.20805 0.81075 0.78569 0.90108 1.90674 1.53033 1.61026 1.39206 1.45908 1.21783 1.53193 1.15179 1.20325 0.94484 0.91285 0.84290 1.22105 1.02442 0.98778 0.97949 1.21879 0.94676 0.97075 1.00873 1.22293 0.95546 0.92834 0.96927 1.61467 1.06916 1.08901 1.48452 1.21714 1.00727 0.90850 0.93852 1.20917 0.85508 0.84511 0.86443 1.90480 1.54915 1.80890 1.23877 1.41940 1.44555 1.14959 1.19890 1.19642 1.25946 0.96303 1.04044 0.90696 1.25989 0.99173 1.00128 0.95966 1.69667 1.44778 1.28621 1.13072 0.84915 0.77965 0.77660 0.78063 1.20112 1.19592 1.19421 1.21886 0.91176 0.95629 0.97083 1.21846 1.00036 0.95012 0.98512 0.92924 0.88772 0.93073 0.90161 0.93059 0.91783 0.89634 0.87291 0.88543 0.74823 0.90611 0.93157 0.91351 0.89885 0.87042 0.88571 0.93236 0.86608 0.91748 0.76993 0.91326 0.95697 0.93308 0.91969 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.56 71.98 0.69 -1.59 16 2 C 0.07 1.06 3.34 30.60 0.10 1.16 16 3 C -0.17 -1.95 9.53 71.98 0.69 -1.26 16 4 O -0.39 -8.94 9.52 -129.94 -1.24 -10.17 16 5 C 0.04 0.72 6.23 71.24 0.44 1.17 16 6 C 0.51 11.89 7.33 87.65 0.64 12.53 16 7 O -0.56 -19.04 12.71 16.01 0.20 -18.83 16 8 N -0.71 -12.55 4.16 -422.55 -1.76 -14.31 16 9 C 0.18 3.93 0.66 3.68 0.00 3.93 16 10 C -0.15 -3.28 8.41 71.98 0.61 -2.67 16 11 C -0.11 -1.78 4.93 30.65 0.15 -1.63 16 12 C 0.05 0.99 5.30 86.33 0.46 1.45 16 13 N -0.53 -16.69 4.40 -900.94 -3.96 -20.65 16 14 C 0.06 2.02 5.45 85.56 0.47 2.49 16 15 C 0.44 21.22 7.46 87.66 0.65 21.87 16 16 O -0.62 -35.01 13.90 -3.07 -0.04 -35.05 16 17 N -0.58 -29.89 5.29 -306.98 -1.62 -31.52 16 18 C -0.33 -19.06 9.68 84.04 0.81 -18.25 16 19 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 20 C -0.01 -0.70 5.50 84.92 0.47 -0.24 16 21 N -0.92 -49.92 13.05 21.66 0.28 -49.63 16 22 Si 0.99 43.78 29.55 68.60 2.03 45.81 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 26 C 0.07 2.45 4.96 86.33 0.43 2.88 16 27 C -0.12 -3.64 4.71 30.65 0.14 -3.49 16 28 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 0.86 7.79 -2.39 -0.02 0.85 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 0.62 7.87 -2.39 -0.02 0.60 16 34 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.11 1.03 7.87 -2.38 -0.02 1.01 16 36 H 0.10 1.20 8.09 -2.39 -0.02 1.18 16 37 H 0.41 4.32 7.47 -92.71 -0.69 3.63 16 38 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.05 1.38 6.16 -2.39 -0.01 1.36 16 40 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.10 1.57 8.01 -2.39 -0.02 1.55 16 44 H 0.05 0.76 7.01 -2.39 -0.02 0.74 16 45 H 0.12 3.31 7.99 -2.38 -0.02 3.29 16 46 H 0.06 1.95 8.12 -2.39 -0.02 1.94 16 47 H 0.40 19.36 7.90 -92.71 -0.73 18.62 16 48 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 49 H 0.02 0.81 7.69 -2.39 -0.02 0.79 16 50 H 0.05 2.23 5.78 -2.39 -0.01 2.22 16 51 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 52 H 0.06 2.17 6.14 -2.39 -0.01 2.15 16 Total: -1.00 -80.19 407.72 0.14 -80.05 By element: Atomic # 1 Polarization: 36.46 SS G_CDS: -0.50 Total: 35.96 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 6.75 Total: 18.35 kcal Atomic # 7 Polarization: -109.05 SS G_CDS: -7.06 Total: -116.11 kcal Atomic # 8 Polarization: -62.98 SS G_CDS: -1.08 Total: -64.06 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -80.19 0.14 -80.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499972455.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.282 kcal (2) G-P(sol) polarization free energy of solvation -80.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds